Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50695 * 119.99954 * 2 1 4 4 C 1.33117 * 119.99526 * 180.02562 * 2 1 3 5 5 F 1.35101 * 119.99792 * 185.44037 * 4 2 1 6 6 C 1.47299 * 119.99970 * 5.44297 * 4 2 1 7 7 O 1.21610 * 119.99811 * 265.24666 * 6 4 2 8 8 N 1.34776 * 119.99788 * 85.25666 * 6 4 2 9 9 C 1.47337 * 125.52703 * 0.02562 * 8 6 4 10 10 C 1.54949 * 104.90253 * 156.72050 * 9 8 6 11 11 C 1.54790 * 101.45361 * 37.26036 * 10 9 8 12 12 H 1.09003 * 112.84461 * 85.50692 * 11 10 9 13 13 C 1.53516 * 109.68637 * 212.19519 * 11 10 9 14 14 N 1.48406 * 106.16343 * 84.43139 * 13 11 10 15 15 C 1.36936 * 125.07136 * 197.28043 * 14 13 11 16 16 H 1.08001 * 120.00109 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99778 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00449 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99648 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47155 * 89.99868 * 19 17 15 21 21 H 1.48505 * 109.46989 * 209.99382 * 19 17 15 22 22 H 1.48496 * 109.47287 * 329.99916 * 19 17 15 23 23 C 1.46488 * 109.64048 * 17.28633 * 14 13 11 24 24 C 1.47257 * 125.51960 * 180.02562 * 8 6 4 25 25 H 1.09001 * 111.94957 * 56.65514 * 24 8 6 26 26 H 1.08996 * 109.47395 * 185.22521 * 1 2 3 27 27 H 1.09002 * 109.46503 * 305.22302 * 1 2 3 28 28 H 1.08998 * 109.46984 * 65.21749 * 1 2 3 29 29 H 1.09003 * 109.46897 * 269.99931 * 3 2 1 30 30 H 1.08994 * 109.47541 * 30.00211 * 3 2 1 31 31 H 1.09004 * 109.46957 * 150.00540 * 3 2 1 32 32 H 1.09006 * 110.35208 * 37.87048 * 9 8 6 33 33 H 1.08994 * 110.45273 * 275.62726 * 9 8 6 34 34 H 1.09005 * 111.03103 * 279.21693 * 10 9 8 35 35 H 1.09004 * 111.02917 * 155.30022 * 10 9 8 36 36 H 1.08999 * 109.91466 * 204.18132 * 13 11 10 37 37 H 1.08995 * 109.92233 * 325.47812 * 13 11 10 38 38 H 0.96996 * 120.00816 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.71512 * 238.32090 * 23 14 13 40 40 H 1.09003 * 109.72155 * 117.76905 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1529 -0.0005 5 9 3.5190 -1.1556 0.1104 6 6 1.4409 -2.4255 -0.1221 7 8 1.1281 -3.0448 0.8767 8 7 1.1184 -2.9037 -1.3402 9 6 1.4360 -2.2570 -2.6254 10 6 1.4193 -3.4062 -3.6646 11 6 0.2484 -4.2745 -3.1439 12 1 -0.7223 -3.9391 -3.5093 13 6 0.5229 -5.7527 -3.4542 14 7 1.3757 -6.2555 -2.3487 15 6 2.1212 -7.4034 -2.3896 16 1 2.1156 -8.0196 -3.2766 17 6 2.8840 -7.7751 -1.2911 18 7 2.8912 -7.0240 -0.2104 19 14 3.9015 -9.3407 -1.3473 20 1 5.2564 -9.0320 -1.8710 21 1 4.0168 -9.9055 0.0213 22 1 3.2404 -10.3291 -2.2368 23 6 1.2974 -5.3375 -1.2098 24 6 0.3914 -4.1572 -1.6023 25 1 -0.5750 -4.1806 -1.0987 26 1 -0.3634 -1.0233 0.0936 27 1 -0.3632 0.5927 0.8396 28 1 -0.3633 0.4308 -0.9330 29 1 2.4422 1.6197 -1.0277 30 1 1.6716 2.0647 0.5138 31 1 3.2130 1.1747 0.5138 32 1 2.4236 -1.7972 -2.5846 33 1 0.6812 -1.5108 -2.8731 34 1 2.3565 -3.9626 -3.6478 35 1 1.2098 -3.0263 -4.6646 36 1 -0.4166 -6.3037 -3.4971 37 1 1.0518 -5.8409 -4.4032 38 1 3.4240 -7.2839 0.5574 39 1 2.2939 -4.9703 -0.9643 40 1 0.8746 -5.8549 -0.3486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075681075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = -28.913507 kcal Electronic energy + Delta-G solvation = -23410.699203 eV Core-core repulsion = 19948.317905 eV Total energy + Delta-G solvation = -3462.381298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.77420 -40.15692 -37.96516 -35.47349 -34.80899 -32.24882 -30.67886 -29.05788 -28.08697 -27.51395 -26.40201 -24.46697 -22.90910 -21.18099 -20.20514 -19.30529 -18.50476 -17.36505 -16.71967 -16.13743 -16.05450 -15.44790 -15.07723 -14.49568 -13.97562 -13.87744 -13.78481 -13.44011 -13.33097 -13.04049 -12.71955 -12.57177 -12.54605 -12.17466 -12.03197 -11.77634 -11.70109 -11.47913 -11.18442 -10.97235 -10.76122 -10.57927 -10.20892 -10.07198 -9.87109 -9.69473 -9.63631 -8.75955 -8.56434 -8.29057 -6.79712 -5.63776 -3.00643 1.48945 2.65192 3.16072 3.43533 3.47748 3.51103 4.26245 4.52772 4.55512 4.72755 4.81247 4.91734 5.17270 5.28445 5.31248 5.42728 5.47859 5.51896 5.54432 5.56017 5.70148 5.75480 5.76231 5.79880 5.89527 6.02646 6.10560 6.13245 6.34693 6.45247 6.51682 6.56438 6.60308 6.82832 7.53321 7.63216 7.81965 7.92365 8.29921 8.33875 9.26502 9.86179 10.49434 11.45751 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.005467 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.429340 B = 5120.003704 C = 5762.941015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.136 4.136 3 C -0.115 4.115 4 C 0.023 3.977 5 F -0.126 7.126 6 C 0.560 3.440 7 O -0.507 6.507 8 N -0.593 5.593 9 C 0.101 3.899 10 C -0.121 4.121 11 C -0.110 4.110 12 H 0.088 0.912 13 C 0.142 3.858 14 N -0.604 5.604 15 C -0.235 4.235 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.915 5.915 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.180 3.820 24 C 0.114 3.886 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.042 0.958 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 16.877 -5.361 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C -0.172 4.172 4 C 0.001 3.999 5 F -0.104 7.104 6 C 0.345 3.655 7 O -0.381 6.381 8 N -0.327 5.327 9 C -0.022 4.022 10 C -0.159 4.159 11 C -0.130 4.130 12 H 0.107 0.893 13 C 0.016 3.984 14 N -0.331 5.331 15 C -0.363 4.363 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.055 3.945 24 C 0.011 3.989 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.243 16.435 -4.573 17.847 hybrid contribution 0.924 -0.770 0.092 1.207 sum -4.319 15.665 -4.480 16.856 Atomic orbital electron populations 1.20759 0.89895 1.03535 1.02741 1.22321 0.97156 0.93673 1.00641 1.20737 1.00072 0.93574 1.02772 1.19415 0.77852 0.94304 1.08329 1.91503 1.28579 1.97040 1.93318 1.17779 0.80501 0.84137 0.83058 1.90897 1.53769 1.57735 1.35740 1.48544 1.55998 1.23512 1.04667 1.22330 1.00440 0.95987 0.83424 1.22766 1.00289 0.95655 0.97145 1.22958 0.98066 0.97740 0.94231 0.89330 1.21403 0.94361 0.89843 0.92805 1.44538 1.52508 1.25027 1.11063 1.19012 1.19717 0.97838 0.99715 0.90344 1.24848 1.00332 0.98905 0.96209 1.69988 1.43710 1.38059 1.04424 0.86141 0.80198 0.82714 0.76809 1.21648 1.21673 1.20679 1.21244 0.96815 0.86556 0.89902 1.22970 0.95784 0.84920 0.95204 0.89858 0.91355 0.90399 0.90646 0.90542 0.91038 0.91107 0.91139 0.91534 0.89393 0.90315 0.96045 0.94019 0.93614 0.92552 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.92 36.01 0.36 -0.82 16 2 C -0.14 -1.65 6.11 -101.13 -0.62 -2.27 16 3 C -0.11 -1.05 9.88 36.00 0.36 -0.70 16 4 C 0.02 0.38 6.03 -37.68 -0.23 0.15 16 5 F -0.13 -2.17 16.31 2.25 0.04 -2.13 16 6 C 0.56 10.87 5.25 -12.58 -0.07 10.80 16 7 O -0.51 -11.96 17.19 5.27 0.09 -11.87 16 8 N -0.59 -10.55 2.83 -163.10 -0.46 -11.01 16 9 C 0.10 1.38 6.65 -2.56 -0.02 1.36 16 10 C -0.12 -1.72 6.31 -24.76 -0.16 -1.88 16 11 C -0.11 -1.77 3.92 -88.21 -0.35 -2.12 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.14 2.80 6.65 -2.72 -0.02 2.78 16 14 N -0.60 -15.50 3.42 -170.84 -0.58 -16.08 16 15 C -0.23 -6.62 10.25 -15.06 -0.15 -6.77 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 18 N -0.92 -28.36 10.23 55.49 0.57 -27.79 16 19 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.18 4.62 4.63 -3.59 -0.02 4.60 16 24 C 0.11 2.23 3.82 -65.86 -0.25 1.97 16 25 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.07 0.88 6.35 -51.93 -0.33 0.55 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 32 H 0.07 0.94 7.71 -51.93 -0.40 0.54 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.54 7.94 -51.93 -0.41 1.13 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.04 0.79 7.94 -51.93 -0.41 0.37 16 38 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.06 1.66 6.88 -51.93 -0.36 1.30 16 40 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -34.19 326.96 -7.74 -41.93 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.04 Total: -2.49 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.25 Total: 6.85 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.48 Total: -54.88 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.19 -7.74 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075681075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.020 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds