Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50695 * 119.99954 * 2 1 4 4 C 1.33117 * 119.99526 * 180.02562 * 2 1 3 5 5 F 1.35101 * 119.99792 * 185.44037 * 4 2 1 6 6 C 1.47299 * 119.99970 * 5.44297 * 4 2 1 7 7 O 1.21610 * 119.99811 * 265.24666 * 6 4 2 8 8 N 1.34776 * 119.99788 * 85.25666 * 6 4 2 9 9 C 1.47337 * 125.52703 * 0.02562 * 8 6 4 10 10 C 1.54949 * 104.90253 * 156.72050 * 9 8 6 11 11 C 1.54790 * 101.45361 * 37.26036 * 10 9 8 12 12 H 1.09003 * 112.84461 * 85.50692 * 11 10 9 13 13 C 1.53516 * 109.68637 * 212.19519 * 11 10 9 14 14 N 1.48406 * 106.16343 * 84.43139 * 13 11 10 15 15 C 1.36936 * 125.07136 * 197.28043 * 14 13 11 16 16 H 1.08001 * 120.00109 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99778 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00449 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99648 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47155 * 89.99868 * 19 17 15 21 21 H 1.48505 * 109.46989 * 209.99382 * 19 17 15 22 22 H 1.48496 * 109.47287 * 329.99916 * 19 17 15 23 23 C 1.46488 * 109.64048 * 17.28633 * 14 13 11 24 24 C 1.47257 * 125.51960 * 180.02562 * 8 6 4 25 25 H 1.09001 * 111.94957 * 56.65514 * 24 8 6 26 26 H 1.08996 * 109.47395 * 185.22521 * 1 2 3 27 27 H 1.09002 * 109.46503 * 305.22302 * 1 2 3 28 28 H 1.08998 * 109.46984 * 65.21749 * 1 2 3 29 29 H 1.09003 * 109.46897 * 269.99931 * 3 2 1 30 30 H 1.08994 * 109.47541 * 30.00211 * 3 2 1 31 31 H 1.09004 * 109.46957 * 150.00540 * 3 2 1 32 32 H 1.09006 * 110.35208 * 37.87048 * 9 8 6 33 33 H 1.08994 * 110.45273 * 275.62726 * 9 8 6 34 34 H 1.09005 * 111.03103 * 279.21693 * 10 9 8 35 35 H 1.09004 * 111.02917 * 155.30022 * 10 9 8 36 36 H 1.08999 * 109.91466 * 204.18132 * 13 11 10 37 37 H 1.08995 * 109.92233 * 325.47812 * 13 11 10 38 38 H 0.96996 * 120.00816 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.71512 * 238.32090 * 23 14 13 40 40 H 1.09003 * 109.72155 * 117.76905 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1529 -0.0005 5 9 3.5190 -1.1556 0.1104 6 6 1.4409 -2.4255 -0.1221 7 8 1.1281 -3.0448 0.8767 8 7 1.1184 -2.9037 -1.3402 9 6 1.4360 -2.2570 -2.6254 10 6 1.4193 -3.4062 -3.6646 11 6 0.2484 -4.2745 -3.1439 12 1 -0.7223 -3.9391 -3.5093 13 6 0.5229 -5.7527 -3.4542 14 7 1.3757 -6.2555 -2.3487 15 6 2.1212 -7.4034 -2.3896 16 1 2.1156 -8.0196 -3.2766 17 6 2.8840 -7.7751 -1.2911 18 7 2.8912 -7.0240 -0.2104 19 14 3.9015 -9.3407 -1.3473 20 1 5.2564 -9.0320 -1.8710 21 1 4.0168 -9.9055 0.0213 22 1 3.2404 -10.3291 -2.2368 23 6 1.2974 -5.3375 -1.2098 24 6 0.3914 -4.1572 -1.6023 25 1 -0.5750 -4.1806 -1.0987 26 1 -0.3634 -1.0233 0.0936 27 1 -0.3632 0.5927 0.8396 28 1 -0.3633 0.4308 -0.9330 29 1 2.4422 1.6197 -1.0277 30 1 1.6716 2.0647 0.5138 31 1 3.2130 1.1747 0.5138 32 1 2.4236 -1.7972 -2.5846 33 1 0.6812 -1.5108 -2.8731 34 1 2.3565 -3.9626 -3.6478 35 1 1.2098 -3.0263 -4.6646 36 1 -0.4166 -6.3037 -3.4971 37 1 1.0518 -5.8409 -4.4032 38 1 3.4240 -7.2839 0.5574 39 1 2.2939 -4.9703 -0.9643 40 1 0.8746 -5.8549 -0.3486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075681075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = -52.401892 kcal Electronic energy + Delta-G solvation = -23411.717736 eV Core-core repulsion = 19948.317905 eV Total energy + Delta-G solvation = -3463.399831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.97285 -41.61332 -39.50005 -36.70661 -36.39659 -34.08969 -32.29433 -30.68667 -29.26607 -28.55828 -27.86557 -26.42673 -24.21853 -22.65713 -21.80926 -20.73159 -19.80384 -18.95975 -18.49708 -17.53891 -17.32603 -16.93942 -16.44648 -16.24372 -15.51918 -15.42810 -15.05306 -14.71917 -14.61220 -14.33554 -14.01806 -13.80280 -13.72932 -13.39566 -13.28588 -13.22858 -13.01909 -12.90913 -12.74307 -12.65009 -12.55670 -12.18306 -11.89283 -11.88177 -11.53075 -11.47372 -11.13441 -10.75403 -9.82953 -9.77702 -8.93853 -7.86088 -5.25167 0.42552 1.19740 1.40219 1.43648 1.52727 1.83994 2.46182 3.06626 3.31024 3.49658 3.58339 3.59387 3.71755 3.86783 3.98401 4.26977 4.30416 4.35087 4.45420 4.52775 4.64319 4.64680 4.67493 4.83079 4.83329 4.90811 4.94170 5.02262 5.07255 5.14448 5.16898 5.26226 5.41405 5.46468 5.49387 5.52615 5.75063 6.15065 6.36311 6.88080 7.05101 7.75081 8.36081 9.22092 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.005467 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.429340 B = 5120.003704 C = 5762.941015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.118 4.118 4 C -0.036 4.036 5 F -0.143 7.143 6 C 0.555 3.445 7 O -0.572 6.572 8 N -0.592 5.592 9 C 0.099 3.901 10 C -0.114 4.114 11 C -0.089 4.089 12 H 0.143 0.857 13 C 0.132 3.868 14 N -0.625 5.625 15 C -0.239 4.239 16 H 0.093 0.907 17 C -0.075 4.075 18 N -0.957 5.957 19 Si 0.981 3.019 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.260 1.260 23 C 0.201 3.799 24 C 0.116 3.884 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.045 0.955 35 H 0.131 0.869 36 H 0.033 0.967 37 H 0.058 0.942 38 H 0.241 0.759 39 H 0.004 0.996 40 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 19.789 -8.676 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.174 4.174 4 C -0.058 4.058 5 F -0.122 7.122 6 C 0.342 3.658 7 O -0.451 6.451 8 N -0.324 5.324 9 C -0.022 4.022 10 C -0.152 4.152 11 C -0.108 4.108 12 H 0.160 0.840 13 C 0.008 3.992 14 N -0.353 5.353 15 C -0.368 4.368 16 H 0.111 0.889 17 C -0.267 4.267 18 N -0.606 5.606 19 Si 0.809 3.191 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.184 1.184 23 C 0.075 3.925 24 C 0.012 3.988 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.149 0.851 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.022 0.978 40 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -6.859 19.372 -7.986 22.048 hybrid contribution 1.339 -1.608 1.080 2.355 sum -5.521 17.764 -6.906 19.842 Atomic orbital electron populations 1.20946 0.88276 1.02526 1.05664 1.22906 0.98213 0.93475 0.93697 1.20930 0.99627 0.92187 1.04697 1.19148 0.77501 0.93828 1.15310 1.91449 1.29473 1.97002 1.94226 1.18444 0.79814 0.84926 0.82627 1.90838 1.56289 1.60055 1.37922 1.48649 1.55046 1.22732 1.05983 1.22682 1.02311 0.96450 0.80777 1.22780 0.97457 0.95001 0.99930 1.23036 1.01463 0.95561 0.90767 0.83958 1.21725 0.93719 0.92368 0.91370 1.44866 1.52960 1.24600 1.12850 1.19544 1.18890 0.98621 0.99727 0.88944 1.25801 1.02367 1.02502 0.96050 1.70316 1.45013 1.40173 1.05080 0.85040 0.78590 0.79084 0.76420 1.21201 1.22765 1.18392 1.20734 0.94966 0.88267 0.88575 1.22735 0.94355 0.83423 0.98312 0.89766 0.94261 0.88060 0.86815 0.87843 0.88087 0.92134 0.90910 0.86615 0.93568 0.85094 0.94883 0.92413 0.95000 0.97756 0.99872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.92 71.24 0.71 -1.34 16 2 C -0.08 -1.77 6.11 -17.60 -0.11 -1.87 16 3 C -0.12 -1.70 9.88 71.23 0.70 -1.00 16 4 C -0.04 -1.18 6.03 23.50 0.14 -1.03 16 5 F -0.14 -5.15 16.31 44.97 0.73 -4.41 16 6 C 0.55 22.66 5.25 86.63 0.45 23.12 16 7 O -0.57 -29.52 17.19 -4.06 -0.07 -29.59 16 8 N -0.59 -21.22 2.83 -788.18 -2.23 -23.45 16 9 C 0.10 2.40 6.65 86.89 0.58 2.98 16 10 C -0.11 -2.86 6.31 31.87 0.20 -2.66 16 11 C -0.09 -2.59 3.92 -9.23 -0.04 -2.63 16 12 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 13 C 0.13 5.01 6.65 86.19 0.57 5.58 16 14 N -0.63 -33.19 3.42 -694.40 -2.37 -35.56 16 15 C -0.24 -13.86 10.25 84.03 0.86 -12.99 16 16 H 0.09 4.97 7.83 -2.91 -0.02 4.95 16 17 C -0.07 -4.56 5.48 84.86 0.47 -4.09 16 18 N -0.96 -64.03 10.23 21.65 0.22 -63.81 16 19 Si 0.98 48.49 29.55 68.60 2.03 50.52 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.20 11.08 4.63 86.68 0.40 11.48 16 24 C 0.12 4.59 3.82 45.92 0.18 4.77 16 25 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 26 H 0.04 0.95 6.35 -2.39 -0.02 0.94 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.06 1.06 7.48 -2.38 -0.02 1.04 16 32 H 0.07 1.78 7.71 -2.38 -0.02 1.76 16 33 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.56 7.94 -2.38 -0.02 1.55 16 35 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.02 7.94 -2.39 -0.02 2.00 16 38 H 0.24 15.93 8.31 -92.71 -0.77 15.15 16 39 H 0.00 0.28 6.88 -2.39 -0.02 0.26 16 40 H -0.02 -1.12 7.51 -2.39 -0.02 -1.13 16 Total: -1.00 -87.17 326.96 4.46 -82.71 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.03 Total: 3.29 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.12 Total: 20.31 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -4.38 Total: -122.83 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.07 Total: -29.59 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.73 Total: -4.41 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -87.17 4.46 -82.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075681075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.309 kcal (2) G-P(sol) polarization free energy of solvation -87.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds