Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50702 * 120.00206 * 2 1 4 4 C 1.33114 * 119.99678 * 179.97438 * 2 1 3 5 5 F 1.35102 * 120.00011 * 185.09830 * 4 2 1 6 6 C 1.47297 * 120.00431 * 5.09601 * 4 2 1 7 7 O 1.21599 * 120.00294 * 266.10291 * 6 4 2 8 8 N 1.34781 * 119.99744 * 86.09711 * 6 4 2 9 9 C 1.47285 * 136.54118 * 359.97438 * 8 6 4 10 10 C 1.54084 * 87.60342 * 151.38826 * 9 8 6 11 11 H 1.08998 * 115.04601 * 141.62980 * 10 9 8 12 12 C 1.53058 * 111.39619 * 273.97438 * 10 9 8 13 13 C 1.53148 * 109.21155 * 142.40577 * 12 10 9 14 14 N 1.46538 * 108.25102 * 301.58178 * 13 12 10 15 15 C 1.36931 * 119.74012 * 236.44422 * 14 13 12 16 16 H 1.07993 * 120.00292 * 25.68129 * 15 14 13 17 17 C 1.38814 * 119.99946 * 205.68832 * 15 14 13 18 18 N 1.31621 * 120.00380 * 15.88318 * 17 15 14 19 19 Si 1.86799 * 120.00205 * 195.89252 * 17 15 14 20 20 H 1.48496 * 109.47179 * 59.99296 * 19 17 15 21 21 H 1.48492 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46817 * 299.99757 * 19 17 15 23 23 C 1.45703 * 120.52096 * 56.42113 * 14 13 12 24 24 C 1.46466 * 136.54268 * 180.02562 * 8 6 4 25 25 H 1.09005 * 111.43630 * 97.09860 * 24 8 6 26 26 H 1.08991 * 109.47077 * 177.70555 * 1 2 3 27 27 H 1.09000 * 109.47484 * 297.71096 * 1 2 3 28 28 H 1.08996 * 109.46468 * 57.70819 * 1 2 3 29 29 H 1.08997 * 109.46636 * 269.99680 * 3 2 1 30 30 H 1.09000 * 109.46727 * 29.99375 * 3 2 1 31 31 H 1.08998 * 109.47173 * 149.99400 * 3 2 1 32 32 H 1.08996 * 113.53497 * 266.06837 * 9 8 6 33 33 H 1.09005 * 113.52957 * 36.64545 * 9 8 6 34 34 H 1.09005 * 109.51724 * 262.32387 * 12 10 9 35 35 H 1.09000 * 109.52018 * 22.48600 * 12 10 9 36 36 H 1.08995 * 109.71141 * 61.27613 * 13 12 10 37 37 H 1.09005 * 109.70729 * 181.89507 * 13 12 10 38 38 H 0.96997 * 120.00523 * 180.02562 * 18 17 15 39 39 H 1.08998 * 108.78881 * 199.11527 * 23 14 13 40 40 H 1.09008 * 108.78806 * 80.90655 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1725 -1.1528 0.0005 5 9 3.5195 -1.1552 0.1045 6 6 1.4404 -2.4260 -0.1122 7 8 1.1193 -3.0336 0.8909 8 7 1.1264 -2.9175 -1.3273 9 6 1.3221 -2.5092 -2.7289 10 6 1.3060 -4.0048 -3.0991 11 1 0.7963 -4.2437 -4.0324 12 6 2.6962 -4.6298 -2.9588 13 6 2.5560 -6.0527 -2.4100 14 7 1.8665 -5.9808 -1.1190 15 6 2.4578 -6.5093 -0.0027 16 1 3.5331 -6.5945 0.0497 17 6 1.6751 -6.9356 1.0615 18 7 0.3840 -7.1284 0.8932 19 14 2.4541 -7.2355 2.7326 20 1 3.0726 -5.9778 3.2233 21 1 1.4118 -7.6811 3.6918 22 1 3.4972 -8.2856 2.6112 23 6 0.5569 -5.3509 -1.0136 24 6 0.4357 -4.0983 -1.8505 25 1 -0.6056 -3.8787 -2.0867 26 1 -0.3633 -1.0268 -0.0411 27 1 -0.3634 0.4779 0.9098 28 1 -0.3632 0.5490 -0.8687 29 1 2.4423 1.6196 -1.0277 30 1 1.6714 2.0647 0.5137 31 1 3.2129 1.1748 0.5139 32 1 0.4820 -1.9500 -3.1406 33 1 2.2816 -2.0251 -2.9112 34 1 3.1811 -4.6620 -3.9345 35 1 3.2965 -4.0324 -2.2725 36 1 1.9740 -6.6588 -3.1043 37 1 3.5437 -6.4936 -2.2751 38 1 -0.1630 -7.4259 1.6369 39 1 0.3734 -5.0948 0.0299 40 1 -0.2024 -6.0634 -1.3365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084274868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = 3.840075 kcal Electronic energy + Delta-G solvation = -23777.177550 eV Core-core repulsion = 20316.216554 eV Total energy + Delta-G solvation = -3460.960997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.71455 -40.60079 -37.93177 -35.36836 -35.18839 -32.14141 -30.18131 -29.58832 -27.91034 -27.19958 -26.70318 -23.84346 -23.06613 -21.38746 -20.71371 -19.04604 -17.90691 -17.31142 -16.27727 -16.11094 -15.82680 -15.48652 -15.01931 -14.18010 -14.08645 -13.76710 -13.67349 -13.37643 -13.24641 -13.00098 -12.75017 -12.65448 -12.52959 -12.37839 -12.00156 -11.86307 -11.65456 -11.48334 -11.12773 -10.66627 -10.60238 -10.48320 -10.18335 -9.89698 -9.76735 -9.67545 -9.07801 -8.69250 -8.29142 -8.22968 -6.57535 -5.64233 -3.05727 1.55948 2.84638 3.14388 3.50352 3.56122 3.61738 4.31720 4.60324 4.61778 4.66164 4.78699 5.14369 5.27568 5.34825 5.39706 5.45468 5.50910 5.52442 5.57309 5.62192 5.67615 5.77690 5.81614 5.88064 6.02134 6.10799 6.19319 6.28271 6.39522 6.47023 6.51342 6.59907 6.79823 7.01163 7.45998 7.74883 7.94779 8.14860 8.50933 8.59225 9.37345 10.01580 10.49111 11.44266 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.007202 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.554616 B = 3886.803026 C = 4696.140167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C -0.114 4.114 4 C 0.026 3.974 5 F -0.128 7.128 6 C 0.574 3.426 7 O -0.493 6.493 8 N -0.621 5.621 9 C 0.095 3.905 10 C -0.112 4.112 11 H 0.095 0.905 12 C -0.117 4.117 13 C 0.148 3.852 14 N -0.584 5.584 15 C -0.254 4.254 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.904 5.904 19 Si 0.900 3.100 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.166 3.834 24 C 0.120 3.880 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.100 0.900 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 15.165 -9.364 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.170 4.170 4 C 0.004 3.996 5 F -0.107 7.107 6 C 0.359 3.641 7 O -0.367 6.367 8 N -0.357 5.357 9 C -0.029 4.029 10 C -0.131 4.131 11 H 0.113 0.887 12 C -0.156 4.156 13 C 0.022 3.978 14 N -0.306 5.306 15 C -0.384 4.384 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.040 3.960 24 C 0.016 3.984 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.118 0.882 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.267 14.833 -8.430 17.063 hybrid contribution 0.589 0.076 0.931 1.104 sum 0.322 14.909 -7.499 16.692 Atomic orbital electron populations 1.20739 0.89914 1.03484 1.02672 1.22303 0.97165 0.93645 1.01091 1.20717 1.00024 0.93656 1.02621 1.19558 0.77681 0.94488 1.07862 1.91485 1.28748 1.97078 1.93368 1.17513 0.80629 0.83546 0.82378 1.90944 1.53412 1.57529 1.34783 1.49453 1.57213 1.25362 1.03715 1.23382 1.01207 0.97690 0.80586 1.22769 0.98412 0.94032 0.97909 0.88691 1.21852 0.93789 1.00070 0.99898 1.20731 0.96599 0.92264 0.88240 1.43436 1.18908 1.65054 1.03247 1.19043 0.90631 1.34964 0.93727 0.92045 1.24911 0.95818 0.98776 0.99138 1.70000 1.04925 1.49421 1.30496 0.86405 0.78169 0.77897 0.84511 1.20963 1.21659 1.21106 1.20188 0.87430 0.87863 1.00539 1.22776 0.95058 0.88588 0.91963 0.90587 0.91355 0.90415 0.90810 0.90686 0.91077 0.91196 0.90177 0.90987 0.92524 0.92084 0.96175 0.92533 0.93753 0.88167 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.95 36.01 0.36 -0.95 16 2 C -0.14 -1.87 6.11 -101.13 -0.62 -2.49 16 3 C -0.11 -1.14 9.88 36.01 0.36 -0.79 16 4 C 0.03 0.46 6.98 -37.68 -0.26 0.19 16 5 F -0.13 -2.32 16.31 2.25 0.04 -2.28 16 6 C 0.57 11.91 5.67 -12.58 -0.07 11.83 16 7 O -0.49 -12.79 16.35 5.28 0.09 -12.70 16 8 N -0.62 -11.36 3.33 -188.98 -0.63 -11.99 16 9 C 0.09 1.26 7.75 -11.53 -0.09 1.17 16 10 C -0.11 -1.68 4.57 -90.29 -0.41 -2.09 16 11 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.12 -1.96 5.70 -26.62 -0.15 -2.11 16 13 C 0.15 3.09 6.46 -3.94 -0.03 3.07 16 14 N -0.58 -15.10 3.02 -174.87 -0.53 -15.63 16 15 C -0.25 -7.42 9.51 -15.06 -0.14 -7.56 16 16 H 0.06 1.78 7.84 -52.49 -0.41 1.37 16 17 C 0.01 0.37 4.90 -17.43 -0.09 0.28 16 18 N -0.90 -27.69 11.06 55.49 0.61 -27.08 16 19 Si 0.90 23.86 29.58 -169.99 -5.03 18.83 16 20 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 23 C 0.17 4.12 4.59 -5.41 -0.02 4.10 16 24 C 0.12 2.24 4.04 -77.64 -0.31 1.93 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.07 0.98 6.29 -51.93 -0.33 0.66 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.10 2.94 5.03 -51.93 -0.26 2.67 16 40 H 0.03 0.87 7.99 -51.92 -0.41 0.45 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -34.74 326.90 -7.98 -42.71 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.97 Total: -3.37 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.49 Total: 6.58 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.54 Total: -54.69 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.03 Total: 18.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.74 -7.98 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084274868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.552 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds