Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50702 * 120.00206 * 2 1 4 4 C 1.33114 * 119.99678 * 179.97438 * 2 1 3 5 5 F 1.35102 * 120.00011 * 185.09830 * 4 2 1 6 6 C 1.47297 * 120.00431 * 5.09601 * 4 2 1 7 7 O 1.21599 * 120.00294 * 266.10291 * 6 4 2 8 8 N 1.34781 * 119.99744 * 86.09711 * 6 4 2 9 9 C 1.47285 * 136.54118 * 359.97438 * 8 6 4 10 10 C 1.54084 * 87.60342 * 151.38826 * 9 8 6 11 11 H 1.08998 * 115.04601 * 141.62980 * 10 9 8 12 12 C 1.53058 * 111.39619 * 273.97438 * 10 9 8 13 13 C 1.53148 * 109.21155 * 142.40577 * 12 10 9 14 14 N 1.46538 * 108.25102 * 301.58178 * 13 12 10 15 15 C 1.36931 * 119.74012 * 236.44422 * 14 13 12 16 16 H 1.07993 * 120.00292 * 25.68129 * 15 14 13 17 17 C 1.38814 * 119.99946 * 205.68832 * 15 14 13 18 18 N 1.31621 * 120.00380 * 15.88318 * 17 15 14 19 19 Si 1.86799 * 120.00205 * 195.89252 * 17 15 14 20 20 H 1.48496 * 109.47179 * 59.99296 * 19 17 15 21 21 H 1.48492 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46817 * 299.99757 * 19 17 15 23 23 C 1.45703 * 120.52096 * 56.42113 * 14 13 12 24 24 C 1.46466 * 136.54268 * 180.02562 * 8 6 4 25 25 H 1.09005 * 111.43630 * 97.09860 * 24 8 6 26 26 H 1.08991 * 109.47077 * 177.70555 * 1 2 3 27 27 H 1.09000 * 109.47484 * 297.71096 * 1 2 3 28 28 H 1.08996 * 109.46468 * 57.70819 * 1 2 3 29 29 H 1.08997 * 109.46636 * 269.99680 * 3 2 1 30 30 H 1.09000 * 109.46727 * 29.99375 * 3 2 1 31 31 H 1.08998 * 109.47173 * 149.99400 * 3 2 1 32 32 H 1.08996 * 113.53497 * 266.06837 * 9 8 6 33 33 H 1.09005 * 113.52957 * 36.64545 * 9 8 6 34 34 H 1.09005 * 109.51724 * 262.32387 * 12 10 9 35 35 H 1.09000 * 109.52018 * 22.48600 * 12 10 9 36 36 H 1.08995 * 109.71141 * 61.27613 * 13 12 10 37 37 H 1.09005 * 109.70729 * 181.89507 * 13 12 10 38 38 H 0.96997 * 120.00523 * 180.02562 * 18 17 15 39 39 H 1.08998 * 108.78881 * 199.11527 * 23 14 13 40 40 H 1.09008 * 108.78806 * 80.90655 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1725 -1.1528 0.0005 5 9 3.5195 -1.1552 0.1045 6 6 1.4404 -2.4260 -0.1122 7 8 1.1193 -3.0336 0.8909 8 7 1.1264 -2.9175 -1.3273 9 6 1.3221 -2.5092 -2.7289 10 6 1.3060 -4.0048 -3.0991 11 1 0.7963 -4.2437 -4.0324 12 6 2.6962 -4.6298 -2.9588 13 6 2.5560 -6.0527 -2.4100 14 7 1.8665 -5.9808 -1.1190 15 6 2.4578 -6.5093 -0.0027 16 1 3.5331 -6.5945 0.0497 17 6 1.6751 -6.9356 1.0615 18 7 0.3840 -7.1284 0.8932 19 14 2.4541 -7.2355 2.7326 20 1 3.0726 -5.9778 3.2233 21 1 1.4118 -7.6811 3.6918 22 1 3.4972 -8.2856 2.6112 23 6 0.5569 -5.3509 -1.0136 24 6 0.4357 -4.0983 -1.8505 25 1 -0.6056 -3.8787 -2.0867 26 1 -0.3633 -1.0268 -0.0411 27 1 -0.3634 0.4779 0.9098 28 1 -0.3632 0.5490 -0.8687 29 1 2.4423 1.6196 -1.0277 30 1 1.6714 2.0647 0.5137 31 1 3.2129 1.1748 0.5139 32 1 0.4820 -1.9500 -3.1406 33 1 2.2816 -2.0251 -2.9112 34 1 3.1811 -4.6620 -3.9345 35 1 3.2965 -4.0324 -2.2725 36 1 1.9740 -6.6588 -3.1043 37 1 3.5437 -6.4936 -2.2751 38 1 -0.1630 -7.4259 1.6369 39 1 0.3734 -5.0948 0.0299 40 1 -0.2024 -6.0634 -1.3365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084274868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = -20.179227 kcal Electronic energy + Delta-G solvation = -23778.219105 eV Core-core repulsion = 20316.216554 eV Total energy + Delta-G solvation = -3462.002552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.97075 -42.01225 -39.46307 -37.10399 -36.47386 -34.02194 -31.99108 -31.09390 -29.00196 -28.63177 -28.01179 -25.71121 -24.60176 -22.82957 -22.22831 -20.35060 -19.53239 -18.87109 -17.87297 -17.48730 -17.40887 -16.91581 -16.43734 -16.09018 -15.66763 -15.39754 -15.01294 -14.70639 -14.64909 -14.34738 -14.26396 -13.98373 -13.80125 -13.57052 -13.28273 -13.20175 -13.00269 -12.80954 -12.69810 -12.60097 -12.42448 -12.26429 -12.02355 -11.78439 -11.54334 -11.20009 -10.77244 -10.45777 -9.84137 -9.66273 -8.69453 -7.89118 -5.31837 0.42290 1.31125 1.36491 1.39470 1.43221 1.80726 2.45425 3.11439 3.25409 3.38981 3.53277 3.70245 3.83425 3.91563 4.13324 4.25666 4.41927 4.46475 4.53939 4.58799 4.61077 4.65850 4.71806 4.77265 4.79676 4.87900 4.90094 4.98880 5.04767 5.08139 5.22461 5.28424 5.37700 5.46934 5.53427 5.66884 5.77137 6.36829 6.75540 7.02707 7.16546 7.93803 8.31524 9.15165 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.007202 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.554616 B = 3886.803026 C = 4696.140167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.116 4.116 4 C -0.029 4.029 5 F -0.142 7.142 6 C 0.567 3.433 7 O -0.571 6.571 8 N -0.625 5.625 9 C 0.108 3.892 10 C -0.099 4.099 11 H 0.142 0.858 12 C -0.107 4.107 13 C 0.139 3.861 14 N -0.603 5.603 15 C -0.260 4.260 16 H 0.055 0.945 17 C -0.042 4.042 18 N -0.929 5.929 19 Si 0.951 3.049 20 H -0.298 1.298 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.178 3.822 24 C 0.105 3.895 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.246 0.754 39 H 0.047 0.953 40 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 18.300 -12.392 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.172 4.172 4 C -0.051 4.051 5 F -0.121 7.121 6 C 0.354 3.646 7 O -0.450 6.450 8 N -0.359 5.359 9 C -0.013 4.013 10 C -0.118 4.118 11 H 0.159 0.841 12 C -0.146 4.146 13 C 0.014 3.986 14 N -0.326 5.326 15 C -0.391 4.391 16 H 0.073 0.927 17 C -0.237 4.237 18 N -0.576 5.576 19 Si 0.780 3.220 20 H -0.226 1.226 21 H -0.215 1.215 22 H -0.190 1.190 23 C 0.051 3.949 24 C 0.002 3.998 25 H 0.122 0.878 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -0.162 17.985 -11.551 21.375 hybrid contribution 0.534 -0.843 1.798 2.057 sum 0.372 17.142 -9.753 19.726 Atomic orbital electron populations 1.20893 0.88658 1.02341 1.05291 1.22871 0.98035 0.93703 0.94621 1.20897 0.99537 0.92093 1.04634 1.19286 0.77437 0.94011 1.14397 1.91436 1.29396 1.97043 1.94208 1.18146 0.80106 0.84193 0.82105 1.90887 1.56572 1.60159 1.37400 1.49663 1.55962 1.25077 1.05193 1.23639 1.03973 0.96904 0.76758 1.22826 0.96352 0.95173 0.97457 0.84056 1.21732 0.95300 0.96363 1.01165 1.20977 0.95711 0.95534 0.86353 1.43685 1.19278 1.65311 1.04314 1.19313 0.90576 1.33894 0.95308 0.92681 1.25570 0.96401 0.99791 1.01986 1.70145 1.05828 1.50926 1.30655 0.85584 0.77817 0.77414 0.81176 1.22556 1.21473 1.19000 1.19823 0.86244 0.90012 0.98805 1.22842 0.97879 0.86174 0.92954 0.87850 0.94496 0.88734 0.86779 0.87838 0.88307 0.92092 0.85599 0.89443 0.87914 0.94756 0.94934 0.93341 0.94519 0.93464 0.97995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.95 71.24 0.71 -1.66 16 2 C -0.09 -2.18 6.11 -17.60 -0.11 -2.29 16 3 C -0.12 -1.85 9.88 71.24 0.70 -1.15 16 4 C -0.03 -1.01 6.98 23.50 0.16 -0.85 16 5 F -0.14 -5.21 16.31 44.97 0.73 -4.48 16 6 C 0.57 24.29 5.67 86.63 0.49 24.78 16 7 O -0.57 -31.91 16.35 -4.03 -0.07 -31.98 16 8 N -0.62 -22.37 3.33 -870.06 -2.90 -25.27 16 9 C 0.11 2.40 7.75 81.10 0.63 3.02 16 10 C -0.10 -2.58 4.57 -10.58 -0.05 -2.63 16 11 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.11 -3.30 5.70 30.66 0.17 -3.12 16 13 C 0.14 5.75 6.46 86.42 0.56 6.31 16 14 N -0.60 -32.30 3.02 -707.17 -2.14 -34.44 16 15 C -0.26 -15.94 9.51 84.03 0.80 -15.14 16 16 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 17 C -0.04 -2.62 4.90 84.86 0.42 -2.21 16 18 N -0.93 -60.35 11.06 21.65 0.24 -60.11 16 19 Si 0.95 51.48 29.58 68.60 2.03 53.51 16 20 H -0.30 -16.71 7.11 99.48 0.71 -16.00 16 21 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 22 H -0.26 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.18 9.23 4.59 85.92 0.39 9.62 16 24 C 0.11 3.86 4.04 38.72 0.16 4.02 16 25 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 26 H 0.04 1.02 6.29 -2.39 -0.02 1.01 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 31 H 0.06 1.15 7.48 -2.39 -0.02 1.13 16 32 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.76 8.05 -2.38 -0.02 1.74 16 34 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.03 1.25 7.68 -2.39 -0.02 1.23 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 2.03 7.87 -2.38 -0.02 2.01 16 38 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.05 2.97 5.03 -2.39 -0.01 2.96 16 40 H 0.00 0.13 7.99 -2.38 -0.02 0.11 16 Total: -1.00 -86.61 326.90 3.97 -82.64 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.03 Total: 1.42 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.04 Total: 18.70 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -4.80 Total: -119.81 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.07 Total: -31.98 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.73 Total: -4.48 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.03 Total: 53.51 kcal Total: -86.61 3.97 -82.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084274868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.460 kcal (2) G-P(sol) polarization free energy of solvation -86.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds