Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50703 * 119.99518 * 2 1 4 4 C 1.33111 * 120.00141 * 180.02562 * 2 1 3 5 5 F 1.35101 * 119.99636 * 185.05667 * 4 2 1 6 6 C 1.47291 * 119.99985 * 5.06062 * 4 2 1 7 7 O 1.21601 * 120.00104 * 5.40742 * 6 4 2 8 8 N 1.34782 * 119.99691 * 185.41162 * 6 4 2 9 9 C 1.46505 * 119.99803 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.55776 * 38.74237 * 9 8 6 11 11 C 1.54847 * 110.62409 * 161.81412 * 9 8 6 12 12 C 1.55845 * 103.44472 * 118.48922 * 11 9 8 13 13 H 1.09005 * 115.56578 * 158.80697 * 12 11 9 14 14 C 1.55846 * 105.74240 * 287.98865 * 12 11 9 15 15 C 1.55868 * 102.97034 * 71.13158 * 14 12 11 16 16 C 1.55842 * 103.53227 * 0.88248 * 15 14 12 17 17 H 1.09004 * 116.13094 * 158.54654 * 16 15 14 18 18 N 1.50236 * 101.05181 * 32.33191 * 16 15 14 19 19 C 1.36937 * 130.83786 * 126.00865 * 18 16 15 20 20 H 1.08007 * 119.99792 * 169.73414 * 19 18 16 21 21 C 1.38805 * 120.00264 * 349.73464 * 19 18 16 22 22 N 1.31618 * 120.00144 * 163.47783 * 21 19 18 23 23 Si 1.86807 * 120.00003 * 343.48033 * 21 19 18 24 24 H 1.48497 * 109.46930 * 87.78539 * 23 21 19 25 25 H 1.48497 * 109.46980 * 207.78910 * 23 21 19 26 26 H 1.48501 * 109.46680 * 327.78839 * 23 21 19 27 27 H 1.08999 * 109.46601 * 238.54782 * 1 2 3 28 28 H 1.08997 * 109.47153 * 358.55350 * 1 2 3 29 29 H 1.09001 * 109.46636 * 118.55088 * 1 2 3 30 30 H 1.09003 * 109.46951 * 269.99755 * 3 2 1 31 31 H 1.08997 * 109.47366 * 29.99942 * 3 2 1 32 32 H 1.09004 * 109.47065 * 150.00183 * 3 2 1 33 33 H 0.96998 * 120.00225 * 359.97438 * 8 6 4 34 34 H 1.09001 * 110.63043 * 359.97438 * 11 9 8 35 35 H 1.08999 * 110.62519 * 236.97509 * 11 9 8 36 36 H 1.09000 * 110.62789 * 190.50020 * 14 12 11 37 37 H 1.08995 * 110.62207 * 313.52223 * 14 12 11 38 38 H 1.09001 * 111.10207 * 242.11499 * 15 14 12 39 39 H 1.09005 * 110.20590 * 119.21866 * 15 14 12 40 40 H 0.97002 * 119.99971 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5197 -1.1550 0.1026 6 6 1.4405 -2.4258 -0.1136 7 8 0.2397 -2.4217 -0.3051 8 7 2.1016 -3.5953 -0.0047 9 6 1.3733 -4.8616 -0.1166 10 1 0.6042 -4.7941 -0.8860 11 6 2.3482 -6.0269 -0.4158 12 6 2.1769 -6.9677 0.8148 13 1 2.4829 -8.0026 0.6619 14 6 2.8611 -6.2332 2.0070 15 6 1.8863 -5.0518 2.2960 16 6 0.7457 -5.2569 1.2540 17 1 -0.2087 -4.7850 1.4878 18 7 0.7256 -6.7548 1.1401 19 6 -0.2997 -7.6504 1.2880 20 1 -0.1593 -8.6834 1.0056 21 6 -1.5194 -7.2307 1.8006 22 7 -2.5907 -7.9797 1.6470 23 14 -1.6405 -5.6026 2.7086 24 1 -1.9023 -4.5116 1.7358 25 1 -2.7511 -5.6659 3.6923 26 1 -0.3641 -5.3363 3.4194 27 1 -0.3632 -0.5362 0.8767 28 1 -0.3633 1.0273 0.0259 29 1 -0.3632 -0.4912 -0.9027 30 1 2.4421 1.6198 -1.0277 31 1 1.6714 2.0648 0.5138 32 1 3.2129 1.1749 0.5138 33 1 3.0595 -3.5986 0.1478 34 1 3.3735 -5.6627 -0.4813 35 1 2.0628 -6.5401 -1.3341 36 1 2.9520 -6.8978 2.8662 37 1 3.8376 -5.8495 1.7120 38 1 2.3779 -4.0910 2.1430 39 1 1.4966 -5.1250 3.3113 40 1 -3.4431 -7.6862 2.0050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109143449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -8.556546 kcal Electronic energy + Delta-G solvation = -23418.046507 eV Core-core repulsion = 19956.547953 eV Total energy + Delta-G solvation = -3461.498554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.96015 -40.30674 -38.80532 -35.45973 -33.96938 -32.41342 -29.77314 -29.53443 -28.84730 -27.95386 -27.04191 -24.04496 -22.36016 -21.31436 -19.94200 -19.40242 -18.79076 -17.96126 -16.99858 -16.22666 -16.10847 -15.81025 -15.43538 -14.62888 -14.43954 -14.02155 -13.71851 -13.54783 -13.16453 -13.06405 -12.86231 -12.54061 -12.37812 -12.34617 -12.22625 -11.97334 -11.74901 -11.37302 -11.25332 -10.96630 -10.86569 -10.49232 -10.23341 -9.79594 -9.69484 -9.52962 -9.20409 -9.08680 -8.92334 -8.53062 -7.21811 -5.89247 -3.19084 1.06569 3.10496 3.15797 3.41073 3.48058 3.52534 4.21307 4.51183 4.57668 4.67841 4.75122 5.05073 5.15537 5.17357 5.23778 5.39649 5.52352 5.57816 5.61611 5.62506 5.75889 5.76615 5.82393 5.86088 5.92314 5.93909 6.12047 6.20233 6.29006 6.35112 6.38703 6.44490 6.59060 6.70482 6.84735 6.89565 7.36599 7.62008 8.24368 8.33715 8.72690 9.66966 10.24090 11.27437 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.006156 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.546030 B = 4547.168103 C = 5337.366956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.025 4.025 5 F -0.141 7.141 6 C 0.539 3.461 7 O -0.516 6.516 8 N -0.706 5.706 9 C 0.129 3.871 10 H 0.091 0.909 11 C -0.133 4.133 12 C 0.141 3.859 13 H 0.098 0.902 14 C -0.131 4.131 15 C -0.138 4.138 16 C 0.115 3.885 17 H 0.097 0.903 18 N -0.605 5.605 19 C -0.228 4.228 20 H 0.099 0.901 21 C 0.018 3.982 22 N -0.917 5.917 23 Si 0.876 3.124 24 H -0.282 1.282 25 H -0.306 1.306 26 H -0.263 1.263 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.401 15.215 -3.307 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.180 4.180 4 C -0.048 4.048 5 F -0.120 7.120 6 C 0.325 3.675 7 O -0.393 6.393 8 N -0.357 5.357 9 C 0.023 3.977 10 H 0.109 0.891 11 C -0.173 4.173 12 C 0.033 3.967 13 H 0.116 0.884 14 C -0.170 4.170 15 C -0.177 4.177 16 C 0.007 3.993 17 H 0.114 0.886 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.117 0.883 21 C -0.179 4.179 22 N -0.562 5.562 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.234 1.234 26 H -0.189 1.189 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.242 14.969 -3.379 19.630 hybrid contribution 0.561 0.941 0.694 1.296 sum 12.802 15.910 -2.685 20.596 Atomic orbital electron populations 1.20952 0.88806 1.01777 1.05022 1.22713 0.98095 0.93576 0.93584 1.20922 1.00231 0.93732 1.03139 1.19527 0.77114 0.94796 1.13316 1.91435 1.29270 1.97147 1.94118 1.18218 0.87395 0.83520 0.78342 1.90863 1.13221 1.86578 1.48684 1.46125 1.11784 1.05794 1.71971 1.22608 0.94293 0.80589 1.00187 0.89104 1.23161 0.97305 0.96517 1.00331 1.22950 0.85150 0.96680 0.91878 0.88446 1.23134 0.96677 0.97467 0.99724 1.23266 0.97272 0.97077 1.00087 1.23493 0.96523 0.86432 0.92857 0.88570 1.46810 1.04142 0.99893 1.81890 1.18661 0.88593 0.91651 1.36566 0.88297 1.24731 0.95221 0.97589 1.00383 1.69760 0.98959 1.38991 1.48489 0.87076 0.77033 0.84472 0.80523 1.21072 1.23435 1.18887 0.89975 0.92189 0.88893 0.90028 0.90557 0.90902 0.76571 0.91689 0.90789 0.91905 0.92753 0.92433 0.91909 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.35 36.01 0.30 -1.01 16 2 C -0.08 -0.88 6.11 -101.13 -0.62 -1.50 16 3 C -0.12 -1.02 9.82 36.01 0.35 -0.66 16 4 C -0.03 -0.34 7.36 -37.69 -0.28 -0.61 16 5 F -0.14 -1.73 15.80 2.25 0.04 -1.69 16 6 C 0.54 8.72 7.70 -12.58 -0.10 8.62 16 7 O -0.52 -9.97 12.95 5.28 0.07 -9.90 16 8 N -0.71 -10.76 3.60 -52.51 -0.19 -10.95 16 9 C 0.13 2.36 3.05 -65.44 -0.20 2.16 16 10 H 0.09 1.87 7.75 -51.93 -0.40 1.47 16 11 C -0.13 -2.10 6.22 -24.24 -0.15 -2.25 16 12 C 0.14 2.56 5.43 -62.80 -0.34 2.22 16 13 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.13 -2.14 6.53 -23.68 -0.15 -2.30 16 15 C -0.14 -2.57 6.11 -23.68 -0.14 -2.72 16 16 C 0.11 2.51 3.39 -62.80 -0.21 2.29 16 17 H 0.10 2.42 3.16 -51.93 -0.16 2.25 16 18 N -0.60 -14.32 2.84 -145.81 -0.41 -14.74 16 19 C -0.23 -6.46 10.99 -15.06 -0.17 -6.63 16 20 H 0.10 2.93 8.06 -52.48 -0.42 2.51 16 21 C 0.02 0.55 5.50 -17.43 -0.10 0.45 16 22 N -0.92 -28.90 13.97 55.49 0.78 -28.12 16 23 Si 0.88 23.27 24.56 -169.99 -4.17 19.09 16 24 H -0.28 -7.64 6.67 56.52 0.38 -7.26 16 25 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 26 H -0.26 -6.61 4.80 56.52 0.27 -6.34 16 27 H 0.08 1.13 7.60 -51.93 -0.39 0.74 16 28 H 0.06 0.55 7.93 -51.93 -0.41 0.13 16 29 H 0.09 1.25 6.87 -51.93 -0.36 0.90 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 32 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 33 H 0.40 5.02 7.61 -40.82 -0.31 4.71 16 34 H 0.06 0.82 7.36 -51.93 -0.38 0.44 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 38 H 0.06 0.94 6.52 -51.93 -0.34 0.60 16 39 H 0.06 1.28 6.59 -51.93 -0.34 0.94 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -32.62 312.56 -6.71 -39.34 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.72 Total: 4.18 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.80 Total: -1.93 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.17 Total: -53.81 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.17 Total: 19.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.62 -6.71 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109143449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.782 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds