Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50702 * 119.99943 * 2 1 4 4 C 1.33109 * 120.00074 * 180.02562 * 2 1 3 5 5 F 1.35100 * 120.00229 * 173.68810 * 4 2 1 6 6 C 1.47301 * 120.00086 * 353.68843 * 4 2 1 7 7 O 1.21609 * 120.00073 * 355.78611 * 6 4 2 8 8 N 1.34769 * 120.00203 * 175.78815 * 6 4 2 9 9 C 1.46507 * 120.00289 * 180.02562 * 8 6 4 10 10 H 1.08998 * 110.68069 * 32.01190 * 9 8 6 11 11 C 1.56684 * 110.74487 * 269.28521 * 9 8 6 12 12 C 1.55847 * 102.59649 * 241.69516 * 11 9 8 13 13 H 1.09007 * 115.55881 * 159.09379 * 12 11 9 14 14 C 1.55846 * 105.06257 * 287.70017 * 12 11 9 15 15 C 1.54849 * 103.44323 * 72.58021 * 14 12 11 16 16 C 1.55840 * 110.62761 * 154.99958 * 9 8 6 17 17 H 1.08996 * 115.56222 * 318.92095 * 16 9 8 18 18 N 1.50231 * 101.75377 * 32.69673 * 12 11 9 19 19 C 1.36937 * 130.83868 * 126.54619 * 18 12 11 20 20 H 1.08004 * 119.99840 * 161.77239 * 19 18 12 21 21 C 1.38811 * 120.00286 * 341.78327 * 19 18 12 22 22 N 1.31615 * 120.00099 * 177.69083 * 21 19 18 23 23 Si 1.86805 * 119.99758 * 357.69063 * 21 19 18 24 24 H 1.48503 * 109.47008 * 84.76234 * 23 21 19 25 25 H 1.48501 * 109.46907 * 204.76123 * 23 21 19 26 26 H 1.48498 * 109.46916 * 324.76292 * 23 21 19 27 27 H 1.08999 * 109.47152 * 264.18716 * 1 2 3 28 28 H 1.08999 * 109.47263 * 24.18896 * 1 2 3 29 29 H 1.09003 * 109.46870 * 144.18674 * 1 2 3 30 30 H 1.08999 * 109.47181 * 270.00001 * 3 2 1 31 31 H 1.08999 * 109.46772 * 30.00042 * 3 2 1 32 32 H 1.08994 * 109.47256 * 150.00008 * 3 2 1 33 33 H 0.97003 * 120.00379 * 0.02562 * 8 6 4 34 34 H 1.09004 * 110.78915 * 123.60433 * 11 9 8 35 35 H 1.08997 * 111.27401 * 0.02562 * 11 9 8 36 36 H 1.09005 * 110.62048 * 191.06450 * 14 12 11 37 37 H 1.08995 * 110.63193 * 314.08619 * 14 12 11 38 38 H 1.09002 * 110.62812 * 118.49128 * 15 14 12 39 39 H 1.09005 * 110.62452 * 241.34512 * 15 14 12 40 40 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1527 -0.0005 5 9 3.5175 -1.1563 -0.1291 6 6 1.4428 -2.4246 0.1392 7 8 0.2421 -2.4187 0.3317 8 7 2.1058 -3.5949 0.0536 9 6 1.3799 -4.8599 0.1920 10 1 0.3652 -4.7658 -0.1948 11 6 1.3520 -5.3230 1.6886 12 6 2.1097 -6.6838 1.6375 13 1 2.5252 -7.0267 2.5851 14 6 1.1252 -7.6696 0.9391 15 6 1.1455 -7.2113 -0.5399 16 6 2.1395 -6.0110 -0.5337 17 1 2.5714 -5.7531 -1.5007 18 7 3.1025 -6.4402 0.5366 19 6 4.4643 -6.5815 0.5114 20 1 4.9833 -6.6446 -0.4337 21 6 5.1778 -6.6439 1.7005 22 7 6.4812 -6.8253 1.6772 23 14 4.2880 -6.4703 3.3338 24 1 3.7498 -7.7912 3.7471 25 1 5.2369 -5.9778 4.3645 26 1 3.1700 -5.5038 3.1881 27 1 -0.3633 -0.1041 1.0224 28 1 -0.3634 0.9374 -0.4211 29 1 -0.3633 -0.8334 -0.6014 30 1 2.4422 1.6198 -1.0276 31 1 1.6714 2.0647 0.5138 32 1 3.2129 1.1748 0.5138 33 1 3.0636 -3.5997 -0.0996 34 1 0.3268 -5.4669 2.0300 35 1 1.8758 -4.6155 2.3313 36 1 1.4819 -8.6958 1.0280 37 1 0.1234 -7.5726 1.3574 38 1 1.5122 -8.0102 -1.1845 39 1 0.1531 -6.8896 -0.8559 40 1 6.9797 -6.8693 2.5082 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110447698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = -10.103428 kcal Electronic energy + Delta-G solvation = -23238.294824 eV Core-core repulsion = 19776.729192 eV Total energy + Delta-G solvation = -3461.565632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.76760 -40.10268 -38.87563 -35.39703 -33.83384 -32.56574 -29.74325 -29.41127 -28.92816 -27.91812 -26.96568 -24.00966 -22.49688 -20.66511 -20.29705 -19.52134 -18.73105 -17.73064 -17.17123 -16.24529 -15.91459 -15.71032 -15.25657 -14.76607 -14.13890 -13.86999 -13.67714 -13.46102 -13.42196 -13.05389 -12.89475 -12.56947 -12.44038 -12.36094 -12.28022 -11.76455 -11.57768 -11.29101 -11.18722 -10.96142 -10.84623 -10.55010 -10.38012 -9.85708 -9.63042 -9.41763 -9.17838 -8.98379 -8.89049 -8.55262 -7.23518 -5.93662 -3.30698 1.14994 3.16954 3.28365 3.30108 3.38453 3.45844 4.37449 4.48921 4.58970 4.66927 4.80072 5.14716 5.15765 5.26444 5.31690 5.32453 5.54682 5.58691 5.63250 5.69934 5.74873 5.77549 5.84358 5.88637 5.95023 6.00053 6.12610 6.16404 6.21002 6.37866 6.44679 6.50424 6.58927 6.70005 6.81619 6.96527 7.36521 7.79171 8.29115 8.32851 8.66968 9.60697 10.19677 11.23083 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.006046 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.723770 B = 4630.257261 C = 5389.258713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.018 4.018 5 F -0.135 7.135 6 C 0.542 3.458 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.129 3.871 10 H 0.089 0.911 11 C -0.141 4.141 12 C 0.118 3.882 13 H 0.088 0.912 14 C -0.134 4.134 15 C -0.127 4.127 16 C 0.137 3.863 17 H 0.100 0.900 18 N -0.607 5.607 19 C -0.229 4.229 20 H 0.097 0.903 21 C 0.019 3.981 22 N -0.922 5.922 23 Si 0.883 3.117 24 H -0.290 1.290 25 H -0.307 1.307 26 H -0.253 1.253 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 10.773 -3.903 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.180 4.180 4 C -0.041 4.041 5 F -0.114 7.114 6 C 0.328 3.672 7 O -0.413 6.413 8 N -0.345 5.345 9 C 0.023 3.977 10 H 0.107 0.893 11 C -0.181 4.181 12 C 0.011 3.989 13 H 0.105 0.895 14 C -0.173 4.173 15 C -0.167 4.167 16 C 0.028 3.972 17 H 0.118 0.882 18 N -0.330 5.330 19 C -0.356 4.356 20 H 0.114 0.886 21 C -0.179 4.179 22 N -0.567 5.567 23 Si 0.717 3.283 24 H -0.218 1.218 25 H -0.236 1.236 26 H -0.179 1.179 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.649 10.698 -3.685 16.971 hybrid contribution 0.561 -0.078 1.060 1.201 sum -12.088 10.619 -2.625 16.303 Atomic orbital electron populations 1.21014 0.89020 1.02844 1.03875 1.22659 0.97955 0.93556 0.94599 1.20884 1.00252 0.93768 1.03068 1.19553 0.77518 0.94763 1.12220 1.91490 1.29256 1.97088 1.93587 1.18227 0.87192 0.83669 0.78071 1.90751 1.13451 1.86835 1.50280 1.45938 1.12904 1.05165 1.70488 1.22976 0.95583 0.82556 0.96623 0.89304 1.23830 0.99556 0.98819 0.95943 1.23278 0.89341 0.93191 0.93046 0.89475 1.22979 0.98450 0.99835 0.96040 1.22888 0.98287 0.98642 0.96842 1.23135 0.89574 0.91389 0.93062 0.88213 1.46781 1.01708 1.76561 1.07919 1.18654 0.77702 1.44425 0.94811 0.88565 1.24837 0.95009 1.00477 0.97536 1.69687 1.05513 1.54554 1.26974 0.87071 0.78574 0.78413 0.84215 1.21818 1.23625 1.17868 0.90205 0.92271 0.88749 0.90269 0.90587 0.90871 0.75266 0.91641 0.91065 0.92056 0.92388 0.91630 0.92211 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.50 36.01 0.31 -0.94 16 2 C -0.08 -1.03 6.11 -101.13 -0.62 -1.64 16 3 C -0.12 -1.15 9.77 36.01 0.35 -0.79 16 4 C -0.02 -0.27 7.35 -37.68 -0.28 -0.55 16 5 F -0.14 -2.11 15.90 2.25 0.04 -2.07 16 6 C 0.54 8.97 7.65 -12.58 -0.10 8.87 16 7 O -0.53 -9.32 12.87 5.27 0.07 -9.25 16 8 N -0.70 -12.01 5.12 -51.54 -0.26 -12.27 16 9 C 0.13 2.23 2.83 -64.42 -0.18 2.04 16 10 H 0.09 1.46 7.23 -51.93 -0.38 1.08 16 11 C -0.14 -2.64 5.98 -23.22 -0.14 -2.78 16 12 C 0.12 2.42 3.39 -62.80 -0.21 2.21 16 13 H 0.09 1.96 3.12 -51.93 -0.16 1.80 16 14 C -0.13 -2.29 6.44 -24.24 -0.16 -2.45 16 15 C -0.13 -2.01 6.44 -24.24 -0.16 -2.17 16 16 C 0.14 2.46 5.06 -62.80 -0.32 2.15 16 17 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 18 N -0.61 -13.63 2.85 -145.82 -0.41 -14.05 16 19 C -0.23 -6.20 11.06 -15.06 -0.17 -6.37 16 20 H 0.10 2.78 8.06 -52.48 -0.42 2.35 16 21 C 0.02 0.55 5.50 -17.43 -0.10 0.45 16 22 N -0.92 -28.24 13.97 55.49 0.78 -27.46 16 23 Si 0.88 22.11 24.56 -169.99 -4.17 17.94 16 24 H -0.29 -7.19 6.96 56.52 0.39 -6.80 16 25 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.25 -5.91 3.99 56.52 0.23 -5.69 16 27 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.09 1.22 6.03 -51.93 -0.31 0.90 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.07 0.72 7.65 -51.93 -0.40 0.33 16 33 H 0.41 7.39 8.21 -40.82 -0.34 7.06 16 34 H 0.06 1.09 7.79 -51.93 -0.40 0.68 16 35 H 0.07 1.47 6.49 -51.93 -0.34 1.13 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.86 7.79 -51.93 -0.40 0.45 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.80 7.82 -51.93 -0.41 0.40 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -30.55 314.75 -6.82 -37.37 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.83 Total: 7.02 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.76 Total: -1.97 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.10 Total: -53.78 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.17 Total: 17.94 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.55 -6.82 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110447698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.269 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds