Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50702 * 119.99943 * 2 1 4 4 C 1.33109 * 120.00074 * 180.02562 * 2 1 3 5 5 F 1.35100 * 120.00229 * 173.68810 * 4 2 1 6 6 C 1.47301 * 120.00086 * 353.68843 * 4 2 1 7 7 O 1.21609 * 120.00073 * 355.78611 * 6 4 2 8 8 N 1.34769 * 120.00203 * 175.78815 * 6 4 2 9 9 C 1.46507 * 120.00289 * 180.02562 * 8 6 4 10 10 H 1.08998 * 110.68069 * 32.01190 * 9 8 6 11 11 C 1.56684 * 110.74487 * 269.28521 * 9 8 6 12 12 C 1.55847 * 102.59649 * 241.69516 * 11 9 8 13 13 H 1.09007 * 115.55881 * 159.09379 * 12 11 9 14 14 C 1.55846 * 105.06257 * 287.70017 * 12 11 9 15 15 C 1.54849 * 103.44323 * 72.58021 * 14 12 11 16 16 C 1.55840 * 110.62761 * 154.99958 * 9 8 6 17 17 H 1.08996 * 115.56222 * 318.92095 * 16 9 8 18 18 N 1.50231 * 101.75377 * 32.69673 * 12 11 9 19 19 C 1.36937 * 130.83868 * 126.54619 * 18 12 11 20 20 H 1.08004 * 119.99840 * 161.77239 * 19 18 12 21 21 C 1.38811 * 120.00286 * 341.78327 * 19 18 12 22 22 N 1.31615 * 120.00099 * 177.69083 * 21 19 18 23 23 Si 1.86805 * 119.99758 * 357.69063 * 21 19 18 24 24 H 1.48503 * 109.47008 * 84.76234 * 23 21 19 25 25 H 1.48501 * 109.46907 * 204.76123 * 23 21 19 26 26 H 1.48498 * 109.46916 * 324.76292 * 23 21 19 27 27 H 1.08999 * 109.47152 * 264.18716 * 1 2 3 28 28 H 1.08999 * 109.47263 * 24.18896 * 1 2 3 29 29 H 1.09003 * 109.46870 * 144.18674 * 1 2 3 30 30 H 1.08999 * 109.47181 * 270.00001 * 3 2 1 31 31 H 1.08999 * 109.46772 * 30.00042 * 3 2 1 32 32 H 1.08994 * 109.47256 * 150.00008 * 3 2 1 33 33 H 0.97003 * 120.00379 * 0.02562 * 8 6 4 34 34 H 1.09004 * 110.78915 * 123.60433 * 11 9 8 35 35 H 1.08997 * 111.27401 * 0.02562 * 11 9 8 36 36 H 1.09005 * 110.62048 * 191.06450 * 14 12 11 37 37 H 1.08995 * 110.63193 * 314.08619 * 14 12 11 38 38 H 1.09002 * 110.62812 * 118.49128 * 15 14 12 39 39 H 1.09005 * 110.62452 * 241.34512 * 15 14 12 40 40 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1527 -0.0005 5 9 3.5175 -1.1563 -0.1291 6 6 1.4428 -2.4246 0.1392 7 8 0.2421 -2.4187 0.3317 8 7 2.1058 -3.5949 0.0536 9 6 1.3799 -4.8599 0.1920 10 1 0.3652 -4.7658 -0.1948 11 6 1.3520 -5.3230 1.6886 12 6 2.1097 -6.6838 1.6375 13 1 2.5252 -7.0267 2.5851 14 6 1.1252 -7.6696 0.9391 15 6 1.1455 -7.2113 -0.5399 16 6 2.1395 -6.0110 -0.5337 17 1 2.5714 -5.7531 -1.5007 18 7 3.1025 -6.4402 0.5366 19 6 4.4643 -6.5815 0.5114 20 1 4.9833 -6.6446 -0.4337 21 6 5.1778 -6.6439 1.7005 22 7 6.4812 -6.8253 1.6772 23 14 4.2880 -6.4703 3.3338 24 1 3.7498 -7.7912 3.7471 25 1 5.2369 -5.9778 4.3645 26 1 3.1700 -5.5038 3.1881 27 1 -0.3633 -0.1041 1.0224 28 1 -0.3634 0.9374 -0.4211 29 1 -0.3633 -0.8334 -0.6014 30 1 2.4422 1.6198 -1.0276 31 1 1.6714 2.0647 0.5138 32 1 3.2129 1.1748 0.5138 33 1 3.0636 -3.5997 -0.0996 34 1 0.3268 -5.4669 2.0300 35 1 1.8758 -4.6155 2.3313 36 1 1.4819 -8.6958 1.0280 37 1 0.1234 -7.5726 1.3574 38 1 1.5122 -8.0102 -1.1845 39 1 0.1531 -6.8896 -0.8559 40 1 6.9797 -6.8693 2.5082 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110447698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -30.324404 kcal Electronic energy + Delta-G solvation = -23239.171672 eV Core-core repulsion = 19776.729192 eV Total energy + Delta-G solvation = -3462.442480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87719 -41.50620 -40.22854 -36.43987 -35.18682 -34.55552 -31.56866 -30.84955 -30.25301 -28.80307 -28.07068 -25.89679 -23.73867 -22.04106 -21.91638 -20.88890 -19.96231 -19.06069 -18.89078 -17.78822 -17.21252 -17.02875 -16.52490 -16.10394 -15.50155 -15.31794 -15.24198 -14.92874 -14.74307 -14.48388 -13.96326 -13.83315 -13.56671 -13.38849 -13.28125 -13.17861 -12.95996 -12.95864 -12.62791 -12.53903 -12.35137 -12.16865 -11.93538 -11.45017 -11.17963 -11.02503 -10.92500 -10.66933 -10.19474 -9.75423 -9.15447 -8.12915 -5.43314 0.08909 1.24931 1.36063 1.43222 1.94660 2.09164 2.40702 2.97487 3.15528 3.23572 3.66573 3.76955 3.79783 3.90255 4.04786 4.20267 4.25152 4.34137 4.40556 4.52929 4.55566 4.62536 4.72324 4.76183 4.79692 4.87592 4.92618 5.04594 5.06692 5.10001 5.17206 5.27162 5.33172 5.37967 5.54696 5.59568 5.63621 6.13211 6.45879 6.60839 7.02362 7.47748 8.21263 9.07885 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.006046 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.723770 B = 4630.257261 C = 5389.258713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.126 4.126 4 C -0.062 4.062 5 F -0.147 7.147 6 C 0.543 3.457 7 O -0.545 6.545 8 N -0.706 5.706 9 C 0.139 3.861 10 H 0.109 0.891 11 C -0.136 4.136 12 C 0.101 3.899 13 H 0.067 0.933 14 C -0.127 4.127 15 C -0.117 4.117 16 C 0.132 3.868 17 H 0.102 0.898 18 N -0.629 5.629 19 C -0.201 4.201 20 H 0.066 0.934 21 C -0.046 4.046 22 N -0.974 5.974 23 Si 0.941 3.059 24 H -0.288 1.288 25 H -0.326 1.326 26 H -0.230 1.230 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 12.360 -4.317 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.055 4.055 3 C -0.182 4.182 4 C -0.084 4.084 5 F -0.126 7.126 6 C 0.331 3.669 7 O -0.426 6.426 8 N -0.354 5.354 9 C 0.033 3.967 10 H 0.127 0.873 11 C -0.176 4.176 12 C -0.004 4.004 13 H 0.084 0.916 14 C -0.166 4.166 15 C -0.156 4.156 16 C 0.026 3.974 17 H 0.120 0.880 18 N -0.353 5.353 19 C -0.329 4.329 20 H 0.084 0.916 21 C -0.239 4.239 22 N -0.623 5.623 23 Si 0.774 3.226 24 H -0.216 1.216 25 H -0.257 1.257 26 H -0.154 1.154 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.263 12.298 -4.125 20.802 hybrid contribution 1.562 -0.477 1.060 1.947 sum -14.701 11.821 -3.065 19.111 Atomic orbital electron populations 1.21056 0.88047 1.04005 1.03673 1.23161 0.98694 0.93892 0.89793 1.21036 0.99976 0.92734 1.04469 1.19521 0.77353 0.94899 1.16585 1.91458 1.29913 1.97102 1.94165 1.18466 0.87147 0.83963 0.77354 1.90735 1.13763 1.87129 1.50971 1.46011 1.12569 1.05654 1.71119 1.22906 0.96209 0.82153 0.95475 0.87312 1.23800 1.00429 0.96878 0.96518 1.23453 0.89604 0.95440 0.91899 0.91585 1.22955 0.99020 0.98206 0.96387 1.22851 0.99343 0.97294 0.96110 1.23401 0.89025 0.92825 0.92145 0.87976 1.46866 1.00764 1.77332 1.10318 1.18551 0.80133 1.40919 0.93322 0.91608 1.25469 0.95552 1.02060 1.00785 1.69840 1.07248 1.58007 1.27232 0.86166 0.77632 0.78830 0.79949 1.21627 1.25659 1.15385 0.90256 0.88918 0.90359 0.88402 0.87903 0.91614 0.76096 0.88760 0.93433 0.92900 0.88952 0.91645 0.88514 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 8.50 71.24 0.61 -1.54 16 2 C -0.05 -1.14 6.11 -17.60 -0.11 -1.25 16 3 C -0.13 -1.94 9.77 71.24 0.70 -1.25 16 4 C -0.06 -1.76 7.35 23.50 0.17 -1.58 16 5 F -0.15 -4.59 15.90 44.97 0.71 -3.88 16 6 C 0.54 17.31 7.65 86.63 0.66 17.97 16 7 O -0.54 -17.95 12.87 -4.06 -0.05 -18.00 16 8 N -0.71 -23.71 5.12 -435.24 -2.23 -25.94 16 9 C 0.14 4.45 2.83 47.26 0.13 4.58 16 10 H 0.11 3.12 7.23 -2.39 -0.02 3.10 16 11 C -0.14 -4.73 5.98 32.87 0.20 -4.53 16 12 C 0.10 3.97 3.39 46.23 0.16 4.13 16 13 H 0.07 2.89 3.12 -2.38 -0.01 2.88 16 14 C -0.13 -3.91 6.44 32.21 0.21 -3.70 16 15 C -0.12 -3.28 6.44 32.21 0.21 -3.07 16 16 C 0.13 4.53 5.06 46.23 0.23 4.76 16 17 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 18 N -0.63 -27.97 2.85 -615.26 -1.75 -29.72 16 19 C -0.20 -11.16 11.06 84.03 0.93 -10.23 16 20 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 21 C -0.05 -2.71 5.50 84.86 0.47 -2.24 16 22 N -0.97 -62.49 13.97 21.65 0.30 -62.19 16 23 Si 0.94 47.23 24.56 68.60 1.68 48.92 16 24 H -0.29 -14.11 6.96 99.48 0.69 -13.42 16 25 H -0.33 -17.17 7.11 99.48 0.71 -16.46 16 26 H -0.23 -10.49 3.99 99.48 0.40 -10.09 16 27 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.08 1.83 6.03 -2.39 -0.01 1.81 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.08 8.12 -2.39 -0.02 1.06 16 32 H 0.06 1.16 7.65 -2.39 -0.02 1.14 16 33 H 0.40 14.69 8.21 -92.71 -0.76 13.92 16 34 H 0.09 2.73 7.79 -2.38 -0.02 2.71 16 35 H 0.05 1.88 6.49 -2.39 -0.02 1.86 16 36 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.09 2.25 7.79 -2.39 -0.02 2.23 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.07 7.82 -2.38 -0.02 2.05 16 40 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -69.14 314.75 3.21 -65.94 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.02 Total: 22.82 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 4.56 Total: 2.05 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -3.68 Total: -117.85 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.71 Total: -3.88 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.68 Total: 48.92 kcal Total: -69.14 3.21 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110447698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.611 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds