Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48500 * 109.46716 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46931 * 300.00195 * 3 2 1 6 6 H 1.48493 * 109.47144 * 60.00432 * 3 2 1 7 7 C 1.37873 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00465 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47658 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00116 * 270.00501 * 10 9 7 12 12 C 1.53008 * 109.46802 * 269.99448 * 11 10 9 13 13 C 1.52994 * 117.49842 * 243.62009 * 12 11 10 14 14 C 1.52997 * 117.49565 * 174.99596 * 12 11 10 15 15 C 1.34777 * 120.00004 * 89.99748 * 10 9 7 16 16 S 1.71198 * 120.00059 * 0.02562 * 15 10 9 17 17 N 1.34786 * 119.99934 * 180.27556 * 15 10 9 18 18 C 1.46497 * 119.99732 * 179.72747 * 17 15 10 19 19 C 1.53005 * 109.46704 * 180.02562 * 18 17 15 20 20 C 1.53777 * 113.61389 * 274.13671 * 19 18 17 21 21 C 1.53961 * 87.02027 * 220.05051 * 20 19 18 22 22 C 1.53781 * 87.10987 * 25.36383 * 21 20 19 23 23 H 0.96996 * 119.99853 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46990 * 60.00085 * 9 7 2 25 25 H 1.08996 * 109.47192 * 300.00461 * 9 7 2 26 26 H 1.08997 * 109.47351 * 29.99452 * 11 10 9 27 27 H 1.08996 * 109.47200 * 150.00044 * 11 10 9 28 28 H 1.09001 * 115.54827 * 29.33361 * 12 11 10 29 29 H 1.09001 * 117.50051 * 359.97438 * 13 12 11 30 30 H 1.09004 * 117.49539 * 145.02349 * 13 12 11 31 31 H 1.09004 * 117.49843 * 214.97984 * 14 12 11 32 32 H 1.09000 * 117.49930 * 0.02562 * 14 12 11 33 33 H 0.97000 * 119.99685 * 359.73172 * 17 15 10 34 34 H 1.09003 * 109.47268 * 299.99680 * 18 17 15 35 35 H 1.09001 * 109.47150 * 60.00346 * 18 17 15 36 36 H 1.09002 * 112.85107 * 45.33734 * 19 18 17 37 37 H 1.09000 * 113.61226 * 334.56660 * 20 19 18 38 38 H 1.08992 * 113.61849 * 105.47260 * 20 19 18 39 39 H 1.09005 * 113.53749 * 270.81443 * 21 20 19 40 40 H 1.08997 * 113.74687 * 139.94056 * 21 20 19 41 41 H 1.08998 * 113.61562 * 220.09402 * 22 21 20 42 42 H 1.08998 * 113.69380 * 89.19839 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7483 -5.3007 -1.7110 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6409 -4.1248 1.1667 16 16 2.0842 -3.4746 2.6493 17 7 3.5210 -5.1457 1.1667 18 6 4.0016 -5.6984 2.4354 19 6 4.9838 -6.8378 2.1557 20 6 4.3029 -8.2006 1.9463 21 6 5.4561 -8.8120 2.7628 22 6 5.6140 -7.4334 3.4258 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.6868 -3.3878 -2.0289 27 1 3.6885 -4.5594 -1.1389 28 1 0.7114 -5.2096 -1.3876 29 1 3.3930 -6.8291 -1.5432 30 1 1.6928 -7.5444 -1.5338 31 1 1.1431 -6.2644 -3.6537 32 1 2.8433 -5.5493 -3.6624 33 1 3.8362 -5.5143 0.3266 34 1 4.5048 -4.9170 3.0048 35 1 3.1566 -6.0793 3.0091 36 1 5.7110 -6.5896 1.3826 37 1 3.3314 -8.2828 2.4337 38 1 4.2842 -8.5240 0.9056 39 1 6.3123 -9.1048 2.1551 40 1 5.1391 -9.5943 3.4524 41 1 6.6522 -7.1383 3.5777 42 1 5.0022 -7.3042 4.3186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115987219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = 58.698207 kcal Electronic energy + Delta-G solvation = -20387.339285 eV Core-core repulsion = 17494.970291 eV Total energy + Delta-G solvation = -2892.368993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60430 -38.71207 -36.72931 -34.80593 -32.48785 -28.86148 -28.24472 -26.34553 -25.78623 -23.42557 -22.70108 -22.37637 -21.76997 -20.18886 -19.49993 -17.70990 -16.81263 -16.41504 -15.70686 -15.40860 -14.87534 -14.71118 -14.44894 -14.17234 -13.92741 -13.69298 -12.91585 -12.63539 -12.43410 -12.21252 -12.10422 -11.77608 -11.64529 -11.30873 -11.06947 -10.83621 -10.78049 -10.69064 -10.58861 -10.50667 -10.34960 -10.19288 -10.03847 -9.97256 -9.55015 -8.40273 -8.11881 -6.87292 -6.33687 -6.00353 -4.03379 2.29394 2.79854 3.33879 3.42100 3.43460 3.48437 3.61789 3.95882 4.40654 4.46510 4.49130 4.52976 4.66180 4.67526 4.79032 4.93135 5.10842 5.14959 5.32991 5.35952 5.48508 5.50724 5.54981 5.57510 5.69229 5.70488 5.76017 5.77449 5.81811 5.98016 5.99450 6.07941 6.20182 6.28373 6.54406 6.79126 7.25674 7.56930 7.65147 7.95945 8.07689 8.21569 8.95351 9.59052 11.08364 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.005114 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.697423 B = 5473.383131 C = 6594.653768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.239 3.761 10 N -0.540 5.540 11 C 0.127 3.873 12 C -0.168 4.168 13 C -0.182 4.182 14 C -0.171 4.171 15 C 0.565 3.435 16 S -0.662 6.662 17 N -0.702 5.702 18 C 0.141 3.859 19 C -0.127 4.127 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.128 4.128 23 H 0.262 0.738 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.388 0.612 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.758 -18.214 -3.183 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.120 3.880 10 N -0.246 5.246 11 C 0.000 4.000 12 C -0.187 4.187 13 C -0.219 4.219 14 C -0.208 4.208 15 C 0.205 3.795 16 S -0.534 6.534 17 N -0.336 5.336 18 C 0.016 3.984 19 C -0.146 4.146 20 C -0.174 4.174 21 C -0.180 4.180 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.225 0.775 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.217 -17.631 -2.237 20.020 hybrid contribution 0.905 0.480 -1.282 1.641 sum 10.122 -17.151 -3.519 20.224 Atomic orbital electron populations 1.69931 1.05909 1.26871 1.50277 1.24816 0.94814 0.98954 0.94958 0.86439 0.79925 0.83510 0.77501 1.19951 1.21183 1.20749 1.21176 0.93047 0.90024 1.51261 0.92642 1.19913 0.87081 0.80728 1.00273 1.47735 1.42707 1.32773 1.01343 1.21294 0.95089 0.95873 0.87780 1.22860 1.01509 0.93471 1.00896 1.23030 1.01170 0.95206 1.02516 1.22921 1.03546 1.03824 0.90551 1.22123 0.82564 0.82565 0.92212 1.93127 1.72760 1.72997 1.14475 1.44988 1.44586 1.34116 1.09950 1.21541 0.97142 0.95025 0.84645 1.22858 0.98115 0.94169 0.99493 1.23035 0.98363 0.95539 1.00435 1.22836 0.98828 0.96907 0.99438 1.22841 1.01126 0.95634 0.96981 0.92782 0.94620 0.90420 0.88085 0.91782 0.86915 0.89247 0.88813 0.88604 0.88604 0.77508 0.90173 0.90060 0.89131 0.89667 0.91684 0.90400 0.91382 0.91266 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.52 -14.36 9.39 -34.44 -0.32 -14.69 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 6.04 4.92 -5.20 -0.03 6.01 16 10 N -0.54 -10.90 2.46 -177.08 -0.43 -11.34 16 11 C 0.13 1.92 5.46 -4.03 -0.02 1.90 16 12 C -0.17 -2.16 6.01 -90.62 -0.54 -2.71 16 13 C -0.18 -1.81 10.01 -26.73 -0.27 -2.08 16 14 C -0.17 -1.72 10.25 -26.73 -0.27 -2.00 16 15 C 0.56 11.41 7.70 -86.91 -0.67 10.74 16 16 S -0.66 -16.62 27.17 -107.50 -2.92 -19.54 16 17 N -0.70 -10.48 5.42 -62.03 -0.34 -10.82 16 18 C 0.14 1.86 4.95 -4.04 -0.02 1.84 16 19 C -0.13 -1.19 3.75 -89.80 -0.34 -1.53 16 20 C -0.14 -1.14 7.65 -25.83 -0.20 -1.34 16 21 C -0.14 -1.05 8.09 -25.82 -0.21 -1.26 16 22 C -0.13 -1.06 7.65 -25.92 -0.20 -1.26 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 24 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.08 2.25 6.58 -51.93 -0.34 1.91 16 26 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 27 H 0.06 0.82 6.09 -51.93 -0.32 0.50 16 28 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.09 0.78 7.77 -51.93 -0.40 0.37 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.39 4.78 5.77 -40.82 -0.24 4.54 16 34 H 0.08 1.21 7.99 -51.93 -0.42 0.79 16 35 H 0.08 1.18 7.73 -51.93 -0.40 0.78 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -33.00 353.95 -12.96 -45.96 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.13 Total: 3.49 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.18 Total: -4.56 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.03 Total: -47.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -16.62 SS G_CDS: -2.92 Total: -19.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.00 -12.96 -45.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115987219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.660 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds