Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99516 * 2 1 4 4 H 1.48499 * 109.46881 * 264.91555 * 3 2 1 5 5 H 1.48497 * 109.47617 * 24.92390 * 3 2 1 6 6 H 1.48499 * 109.46958 * 144.92439 * 3 2 1 7 7 C 1.37868 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00256 * 0.39901 * 7 2 1 9 9 C 1.50707 * 119.99967 * 180.38413 * 7 2 1 10 10 C 1.52997 * 115.54454 * 87.00143 * 9 7 2 11 11 O 1.45204 * 109.47358 * 64.82103 * 10 9 7 12 12 C 1.34227 * 117.00120 * 180.36567 * 11 10 9 13 13 O 1.20826 * 119.99897 * 4.55483 * 12 11 10 14 14 C 1.50700 * 119.99949 * 184.55142 * 12 11 10 15 15 C 1.52995 * 109.47424 * 173.64684 * 14 12 11 16 16 H 1.08997 * 109.47119 * 54.99477 * 15 14 12 17 17 C 1.53002 * 109.46836 * 295.00527 * 15 14 12 18 18 C 1.53002 * 109.47099 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47250 * 59.99307 * 18 17 15 20 20 C 1.52998 * 109.47134 * 300.00263 * 19 18 17 21 21 C 1.52994 * 109.47485 * 175.00366 * 15 14 12 22 22 H 1.08997 * 109.47667 * 59.99447 * 21 15 14 23 23 O 1.42907 * 109.46793 * 299.99376 * 21 15 14 24 24 C 1.52992 * 117.50133 * 232.67278 * 9 7 2 25 25 C 1.52997 * 117.49850 * 301.33423 * 9 7 2 26 26 H 0.97002 * 120.00115 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47523 * 304.81441 * 10 9 7 28 28 H 1.09000 * 109.46893 * 184.81491 * 10 9 7 29 29 H 1.08998 * 109.46836 * 53.64470 * 14 12 11 30 30 H 1.09007 * 109.47338 * 293.64948 * 14 12 11 31 31 H 1.09008 * 109.46731 * 299.99070 * 17 15 14 32 32 H 1.08995 * 109.47812 * 59.99767 * 17 15 14 33 33 H 1.09001 * 109.47239 * 179.97438 * 18 17 15 34 34 H 1.09001 * 109.46831 * 299.99749 * 18 17 15 35 35 H 1.09001 * 109.46843 * 60.00449 * 19 18 17 36 36 H 1.09001 * 109.46902 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.46902 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46943 * 299.99602 * 20 19 18 39 39 H 0.96701 * 113.99788 * 179.97438 * 23 21 15 40 40 H 1.08997 * 117.49816 * 215.00458 * 24 9 7 41 41 H 1.09002 * 117.49890 * 0.02562 * 24 9 7 42 42 H 1.09000 * 117.49876 * 359.97312 * 25 9 7 43 43 H 1.09004 * 117.49822 * 144.96938 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6039 1.9844 -1.3946 5 1 1.3970 2.6813 0.5900 6 1 3.4888 1.4737 0.8046 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0056 9 6 3.5116 -1.1940 0.0093 10 6 4.1633 -1.1258 1.3918 11 8 3.8422 -2.3292 2.1382 12 6 4.3350 -2.4238 3.3832 13 8 4.9426 -1.4969 3.8645 14 6 4.1305 -3.6861 4.1806 15 6 4.9177 -3.5958 5.4894 16 1 4.6292 -2.6916 6.0252 17 6 6.4157 -3.5498 5.1813 18 6 7.2030 -3.4601 6.4901 19 6 6.8973 -4.6852 7.3542 20 6 5.3994 -4.7312 7.6622 21 6 4.6122 -4.8206 6.3539 22 1 4.9008 -5.7248 5.8180 23 8 3.2131 -4.8634 6.6416 24 6 4.2243 -2.0137 -1.0681 25 6 4.2247 -0.4849 -1.1437 26 1 -0.4850 0.8400 -0.0004 27 1 3.7875 -0.2544 1.9281 28 1 5.2446 -1.0453 1.2802 29 1 4.4820 -4.5414 3.6034 30 1 3.0702 -3.8083 4.4020 31 1 6.7043 -4.4541 4.6454 32 1 6.6334 -2.6772 4.5654 33 1 8.2702 -3.4278 6.2707 34 1 6.9144 -2.5561 7.0265 35 1 7.1859 -5.5892 6.8178 36 1 7.4579 -4.6211 8.2868 37 1 5.1817 -5.6038 8.2781 38 1 5.1109 -3.8272 8.1985 39 1 2.9467 -5.6162 7.1871 40 1 5.1575 -2.5045 -0.7920 41 1 3.6032 -2.5527 -1.7835 42 1 3.6039 -0.0188 -1.9088 43 1 5.1581 0.0306 -0.9173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118459403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = -136.025522 kcal Electronic energy + Delta-G solvation = -22810.095049 eV Core-core repulsion = 19434.236578 eV Total energy + Delta-G solvation = -3375.858470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25037 -39.01558 -37.10086 -35.75504 -35.31605 -32.80961 -32.08403 -29.87574 -28.04833 -26.55343 -25.15106 -22.91276 -22.04573 -21.66666 -20.21711 -19.82577 -19.12029 -17.41835 -17.11804 -16.58572 -15.98321 -15.54891 -15.39175 -14.84963 -14.67419 -14.17159 -14.05474 -13.60028 -13.34646 -13.11498 -12.78528 -12.55736 -12.46795 -12.21228 -12.02612 -11.67634 -11.52022 -11.15122 -11.11368 -10.88476 -10.85242 -10.59281 -10.51100 -10.38798 -10.21975 -10.00726 -9.92168 -9.84221 -9.56582 -9.02421 -8.57863 -8.56094 -6.10022 -4.12904 2.73178 3.23593 3.28814 3.38604 3.41732 3.99379 4.41507 4.42675 4.51219 4.73915 4.87533 4.90387 5.02815 5.11785 5.15792 5.16164 5.24614 5.29230 5.45907 5.52865 5.58039 5.68571 5.76188 5.79455 5.89160 5.94933 5.98269 6.00364 6.03494 6.07538 6.14957 6.23451 6.34045 6.34729 6.41819 6.67309 6.93891 7.07668 7.22752 7.50080 7.70746 8.35527 8.52266 8.94844 9.52088 11.01965 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.003940 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.210028 B = 7104.676377 C = 7432.064873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.481 4.481 8 H 0.081 0.919 9 C -0.005 4.005 10 C 0.108 3.892 11 O -0.332 6.332 12 C 0.456 3.544 13 O -0.524 6.524 14 C -0.109 4.109 15 C -0.067 4.067 16 H 0.088 0.912 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.150 4.150 21 C 0.110 3.890 22 H 0.057 0.943 23 O -0.564 6.564 24 C -0.173 4.173 25 C -0.193 4.193 26 H 0.265 0.735 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.376 0.624 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -10.633 12.978 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.099 0.901 9 C -0.006 4.006 10 C 0.034 3.966 11 O -0.247 6.247 12 C 0.299 3.701 13 O -0.415 6.415 14 C -0.146 4.146 15 C -0.085 4.085 16 H 0.106 0.894 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.188 4.188 21 C 0.052 3.948 22 H 0.075 0.925 23 O -0.369 6.369 24 C -0.210 4.210 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.223 0.777 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.090 -9.664 12.712 20.647 hybrid contribution 0.439 0.615 0.352 0.833 sum 13.529 -9.049 13.064 20.870 Atomic orbital electron populations 1.69883 1.06261 1.27130 1.50044 1.24988 0.94650 0.98930 0.94022 0.86909 0.80227 0.83522 0.78769 1.20025 1.21923 1.18814 1.20224 0.85933 0.94666 1.51024 0.90063 1.19336 0.95521 1.00908 0.84858 1.22991 0.96778 0.84384 0.92400 1.86553 1.68307 1.44088 1.25765 1.23664 0.75437 0.89467 0.81494 1.90579 1.39722 1.40238 1.70942 1.21365 1.04475 0.94107 0.94679 1.20950 0.95131 0.98392 0.94043 0.89350 1.21705 0.93128 1.03075 0.97851 1.21540 0.99831 0.98189 0.96158 1.21504 0.95318 0.98766 0.99913 1.22247 0.96008 1.02666 0.97904 1.21800 0.80873 0.97768 0.94404 0.92543 1.86575 1.23602 1.52185 1.74527 1.22814 1.01128 0.92607 1.04420 1.23020 1.01316 0.95372 1.03324 0.92491 0.91458 0.93754 0.88370 0.86763 0.92096 0.89780 0.91843 0.91678 0.91905 0.91872 0.91791 0.91010 0.77727 0.90841 0.89135 0.88704 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.95 24.78 -169.99 -4.21 17.74 16 4 H -0.27 -6.59 7.01 56.52 0.40 -6.19 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.35 5.95 56.52 0.34 -6.01 16 7 C -0.48 -13.62 9.36 -34.44 -0.32 -13.94 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 9 C -0.01 -0.12 1.09 -155.66 -0.17 -0.29 16 10 C 0.11 2.45 5.01 37.16 0.19 2.63 16 11 O -0.33 -7.19 10.15 -39.25 -0.40 -7.59 16 12 C 0.46 8.53 7.55 36.01 0.27 8.80 16 13 O -0.52 -10.66 13.96 -18.75 -0.26 -10.92 16 14 C -0.11 -1.54 5.21 -27.89 -0.15 -1.68 16 15 C -0.07 -0.82 1.58 -90.62 -0.14 -0.97 16 16 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 17 C -0.12 -1.36 4.95 -26.73 -0.13 -1.50 16 18 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 19 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 20 C -0.15 -1.22 5.54 -26.76 -0.15 -1.37 16 21 C 0.11 1.07 2.90 -26.76 -0.08 0.99 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 O -0.56 -5.85 12.56 -35.23 -0.44 -6.29 16 24 C -0.17 -3.52 9.96 -26.70 -0.27 -3.79 16 25 C -0.19 -4.10 7.60 -26.70 -0.20 -4.30 16 26 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.07 1.64 6.68 -51.93 -0.35 1.29 16 28 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.66 7.54 -51.92 -0.39 1.27 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.08 1.16 6.19 -51.93 -0.32 0.84 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.38 2.20 9.08 45.56 0.41 2.62 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.09 2.08 7.09 -51.93 -0.37 1.72 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -32.49 340.16 -7.52 -40.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.54 Total: 4.25 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.56 Total: -15.65 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.10 Total: -24.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.21 Total: 17.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.49 -7.52 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118459403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.011 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds