Wall clock time and date at job start Tue Mar 31 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99516 * 2 1 4 4 H 1.48499 * 109.46881 * 264.91555 * 3 2 1 5 5 H 1.48497 * 109.47617 * 24.92390 * 3 2 1 6 6 H 1.48499 * 109.46958 * 144.92439 * 3 2 1 7 7 C 1.37868 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00256 * 0.39901 * 7 2 1 9 9 C 1.50707 * 119.99967 * 180.38413 * 7 2 1 10 10 C 1.52997 * 115.54454 * 87.00143 * 9 7 2 11 11 O 1.45204 * 109.47358 * 64.82103 * 10 9 7 12 12 C 1.34227 * 117.00120 * 180.36567 * 11 10 9 13 13 O 1.20826 * 119.99897 * 4.55483 * 12 11 10 14 14 C 1.50700 * 119.99949 * 184.55142 * 12 11 10 15 15 C 1.52995 * 109.47424 * 173.64684 * 14 12 11 16 16 H 1.08997 * 109.47119 * 54.99477 * 15 14 12 17 17 C 1.53002 * 109.46836 * 295.00527 * 15 14 12 18 18 C 1.53002 * 109.47099 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47250 * 59.99307 * 18 17 15 20 20 C 1.52998 * 109.47134 * 300.00263 * 19 18 17 21 21 C 1.52994 * 109.47485 * 175.00366 * 15 14 12 22 22 H 1.08997 * 109.47667 * 59.99447 * 21 15 14 23 23 O 1.42907 * 109.46793 * 299.99376 * 21 15 14 24 24 C 1.52992 * 117.50133 * 232.67278 * 9 7 2 25 25 C 1.52997 * 117.49850 * 301.33423 * 9 7 2 26 26 H 0.97002 * 120.00115 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47523 * 304.81441 * 10 9 7 28 28 H 1.09000 * 109.46893 * 184.81491 * 10 9 7 29 29 H 1.08998 * 109.46836 * 53.64470 * 14 12 11 30 30 H 1.09007 * 109.47338 * 293.64948 * 14 12 11 31 31 H 1.09008 * 109.46731 * 299.99070 * 17 15 14 32 32 H 1.08995 * 109.47812 * 59.99767 * 17 15 14 33 33 H 1.09001 * 109.47239 * 179.97438 * 18 17 15 34 34 H 1.09001 * 109.46831 * 299.99749 * 18 17 15 35 35 H 1.09001 * 109.46843 * 60.00449 * 19 18 17 36 36 H 1.09001 * 109.46902 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.46902 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46943 * 299.99602 * 20 19 18 39 39 H 0.96701 * 113.99788 * 179.97438 * 23 21 15 40 40 H 1.08997 * 117.49816 * 215.00458 * 24 9 7 41 41 H 1.09002 * 117.49890 * 0.02562 * 24 9 7 42 42 H 1.09000 * 117.49876 * 359.97312 * 25 9 7 43 43 H 1.09004 * 117.49822 * 144.96938 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6039 1.9844 -1.3946 5 1 1.3970 2.6813 0.5900 6 1 3.4888 1.4737 0.8046 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0056 9 6 3.5116 -1.1940 0.0093 10 6 4.1633 -1.1258 1.3918 11 8 3.8422 -2.3292 2.1382 12 6 4.3350 -2.4238 3.3832 13 8 4.9426 -1.4969 3.8645 14 6 4.1305 -3.6861 4.1806 15 6 4.9177 -3.5958 5.4894 16 1 4.6292 -2.6916 6.0252 17 6 6.4157 -3.5498 5.1813 18 6 7.2030 -3.4601 6.4901 19 6 6.8973 -4.6852 7.3542 20 6 5.3994 -4.7312 7.6622 21 6 4.6122 -4.8206 6.3539 22 1 4.9008 -5.7248 5.8180 23 8 3.2131 -4.8634 6.6416 24 6 4.2243 -2.0137 -1.0681 25 6 4.2247 -0.4849 -1.1437 26 1 -0.4850 0.8400 -0.0004 27 1 3.7875 -0.2544 1.9281 28 1 5.2446 -1.0453 1.2802 29 1 4.4820 -4.5414 3.6034 30 1 3.0702 -3.8083 4.4020 31 1 6.7043 -4.4541 4.6454 32 1 6.6334 -2.6772 4.5654 33 1 8.2702 -3.4278 6.2707 34 1 6.9144 -2.5561 7.0265 35 1 7.1859 -5.5892 6.8178 36 1 7.4579 -4.6211 8.2868 37 1 5.1817 -5.6038 8.2781 38 1 5.1109 -3.8272 8.1985 39 1 2.9467 -5.6162 7.1871 40 1 5.1575 -2.5045 -0.7920 41 1 3.6032 -2.5527 -1.7835 42 1 3.6039 -0.0188 -1.9088 43 1 5.1581 0.0306 -0.9173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118459403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:03 Heat of formation + Delta-G solvation = -157.573279 kcal Electronic energy + Delta-G solvation = -22811.029429 eV Core-core repulsion = 19434.236578 eV Total energy + Delta-G solvation = -3376.792851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64140 -40.03917 -38.78112 -37.07647 -36.40333 -34.27942 -33.79728 -30.64215 -29.45502 -28.08754 -27.05685 -23.76035 -23.40039 -22.92023 -21.35288 -21.04381 -20.79565 -18.74223 -18.41482 -18.15350 -17.56487 -17.18407 -16.69502 -16.18569 -15.66163 -15.47089 -15.07555 -14.80472 -14.74373 -14.51814 -14.24161 -13.95699 -13.72644 -13.58723 -13.13666 -13.07903 -12.81213 -12.58072 -12.33203 -12.25886 -12.06156 -11.97793 -11.76251 -11.69099 -11.60683 -11.46899 -11.34416 -10.98753 -10.94314 -10.70084 -10.63412 -10.38919 -8.32879 -6.40085 1.23464 1.30461 1.34397 1.43786 1.77792 2.32134 3.00096 3.14768 3.28682 3.55580 3.68578 3.90042 3.96838 4.02609 4.15818 4.20795 4.25419 4.28246 4.33332 4.39035 4.41945 4.44284 4.53597 4.60341 4.65992 4.77587 4.80301 4.97015 5.00246 5.03027 5.18385 5.19547 5.21941 5.22546 5.28646 5.37412 5.43805 5.52777 5.63905 5.67058 6.27498 6.67497 6.82512 6.98327 7.28755 8.83031 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.003940 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.210028 B = 7104.676377 C = 7432.064873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.252 1.252 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.482 4.482 8 H 0.034 0.966 9 C -0.041 4.041 10 C 0.113 3.887 11 O -0.351 6.351 12 C 0.451 3.549 13 O -0.543 6.543 14 C -0.102 4.102 15 C -0.066 4.066 16 H 0.057 0.943 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.147 4.147 21 C 0.114 3.886 22 H 0.078 0.922 23 O -0.587 6.587 24 C -0.151 4.151 25 C -0.181 4.181 26 H 0.266 0.734 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.395 0.605 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.985 -11.727 13.470 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.177 1.177 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.520 4.520 8 H 0.052 0.948 9 C -0.042 4.042 10 C 0.040 3.960 11 O -0.267 6.267 12 C 0.296 3.704 13 O -0.434 6.434 14 C -0.139 4.139 15 C -0.085 4.085 16 H 0.076 0.924 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.184 4.184 21 C 0.056 3.944 22 H 0.096 0.904 23 O -0.396 6.396 24 C -0.188 4.188 25 C -0.218 4.218 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.991 -10.786 13.211 23.379 hybrid contribution -0.517 0.853 0.229 1.024 sum 15.474 -9.932 13.439 22.775 Atomic orbital electron populations 1.70032 1.08196 1.28100 1.52315 1.25829 0.95311 1.02763 0.93800 0.85964 0.79313 0.78670 0.80073 1.17660 1.22457 1.17181 1.20368 0.88829 0.92791 1.50021 0.94814 1.19228 0.93045 1.05307 0.86637 1.22761 0.97883 0.83980 0.91425 1.86570 1.69176 1.43719 1.27203 1.24567 0.74504 0.90669 0.80659 1.90566 1.40547 1.41313 1.70992 1.21519 1.04618 0.92567 0.95192 1.20966 0.95623 0.98732 0.93134 0.92446 1.21652 0.92600 1.02566 0.98656 1.21538 1.00091 0.98674 0.95366 1.21496 0.95049 0.98224 1.00272 1.22220 0.96057 1.03018 0.97136 1.21777 0.80939 0.96825 0.94904 0.90446 1.86527 1.24078 1.53710 1.75245 1.22875 1.01546 0.92589 1.01809 1.23092 1.01746 0.96128 1.00865 0.92466 0.94043 0.91118 0.85619 0.87316 0.90155 0.92778 0.90775 0.93240 0.90379 0.90578 0.89331 0.92640 0.75453 0.87537 0.89650 0.89624 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.44 0.30 -59.95 16 2 C 0.02 1.21 5.47 84.65 0.46 1.68 16 3 Si 0.94 45.28 24.78 68.60 1.70 46.98 16 4 H -0.25 -11.24 7.01 99.48 0.70 -10.54 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.25 -11.31 5.95 99.48 0.59 -10.72 16 7 C -0.48 -28.11 9.36 25.60 0.24 -27.87 16 8 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 9 C -0.04 -1.93 1.09 -52.93 -0.06 -1.99 16 10 C 0.11 5.03 5.01 71.98 0.36 5.39 16 11 O -0.35 -15.22 10.15 -51.38 -0.52 -15.74 16 12 C 0.45 16.92 7.55 71.24 0.54 17.46 16 13 O -0.54 -22.36 13.96 21.96 0.31 -22.05 16 14 C -0.10 -2.81 5.21 29.85 0.16 -2.66 16 15 C -0.07 -1.58 1.58 -10.80 -0.02 -1.60 16 16 H 0.06 1.72 7.86 -2.39 -0.02 1.70 16 17 C -0.12 -2.51 4.95 30.60 0.15 -2.36 16 18 C -0.12 -2.06 5.92 30.60 0.18 -1.88 16 19 C -0.11 -1.41 5.92 30.59 0.18 -1.23 16 20 C -0.15 -2.01 5.54 30.58 0.17 -1.85 16 21 C 0.11 1.96 2.90 30.57 0.09 2.05 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 O -0.59 -11.30 12.56 -148.98 -1.87 -13.17 16 24 C -0.15 -5.81 9.96 30.62 0.30 -5.50 16 25 C -0.18 -7.16 7.60 30.62 0.23 -6.93 16 26 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.04 2.02 6.68 -2.39 -0.02 2.00 16 28 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 29 H 0.13 2.76 8.14 -2.39 -0.02 2.75 16 30 H 0.11 3.17 7.54 -2.38 -0.02 3.15 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.48 6.19 -2.39 -0.01 1.47 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.40 3.80 9.08 -74.06 -0.67 3.13 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.09 3.55 7.09 -2.39 -0.02 3.53 16 43 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -73.68 340.16 3.10 -70.59 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.19 Total: 20.62 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 2.99 Total: -27.27 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.30 Total: -59.95 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.09 Total: -50.97 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.70 Total: 46.98 kcal Total: -73.68 3.10 -70.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118459403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.987 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds