Wall clock time and date at job start Tue Mar 31 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47067 * 2 1 4 4 C 1.50701 * 109.46915 * 240.00334 * 2 1 3 5 5 O 1.21285 * 119.99387 * 253.92604 * 4 2 1 6 6 N 1.34774 * 120.00226 * 73.92325 * 4 2 1 7 7 C 1.46493 * 119.99914 * 3.70135 * 6 4 2 8 8 C 1.46498 * 119.99875 * 183.70123 * 6 4 2 9 9 C 1.50700 * 109.47418 * 90.00418 * 8 6 4 10 10 H 1.08000 * 119.99813 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99923 * 180.02562 * 9 8 6 12 12 N 1.31507 * 120.00463 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99588 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47273 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47258 * 119.99675 * 13 11 9 16 16 H 1.48500 * 109.46781 * 239.99565 * 13 11 9 17 17 N 1.46502 * 109.47001 * 120.00453 * 2 1 3 18 18 C 1.35311 * 125.86646 * 35.32343 * 17 2 1 19 19 C 1.35358 * 106.17294 * 180.12056 * 18 17 2 20 20 C 1.50692 * 126.75028 * 179.85145 * 19 18 17 21 21 H 1.09000 * 109.47153 * 244.70657 * 20 19 18 22 22 C 1.53001 * 109.47021 * 124.71181 * 20 19 18 23 23 O 1.42902 * 109.47600 * 4.70922 * 20 19 18 24 24 N 1.33771 * 106.49185 * 359.58922 * 19 18 17 25 25 N 1.28633 * 108.89209 * 0.26197 * 24 19 18 26 26 H 1.09002 * 109.47394 * 175.78130 * 1 2 3 27 27 H 1.09004 * 109.47285 * 295.78498 * 1 2 3 28 28 H 1.09005 * 109.46644 * 55.78072 * 1 2 3 29 29 H 1.09003 * 109.47497 * 84.69592 * 7 6 4 30 30 H 1.09005 * 109.47627 * 204.69344 * 7 6 4 31 31 H 1.08998 * 109.47461 * 324.69373 * 7 6 4 32 32 H 1.09006 * 109.47215 * 210.00306 * 8 6 4 33 33 H 1.09003 * 109.47022 * 329.99788 * 8 6 4 34 34 H 0.96997 * 120.00513 * 180.02562 * 12 11 9 35 35 H 1.07994 * 126.91557 * 359.96689 * 18 17 2 36 36 H 1.09007 * 109.47218 * 179.97438 * 22 20 19 37 37 H 1.08996 * 109.47159 * 299.99955 * 22 20 19 38 38 H 1.09001 * 109.47206 * 60.00269 * 22 20 19 39 39 H 0.96693 * 114.00155 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5086 -1.8218 -1.1370 6 7 1.9522 -0.1106 -2.4348 7 6 1.4521 1.2625 -2.5374 8 6 2.3652 -0.8318 -3.6412 9 6 1.1838 -1.5727 -4.2128 10 1 0.2217 -1.5126 -3.7258 11 6 1.3316 -2.3279 -5.3568 12 7 2.5032 -2.4015 -5.9495 13 14 -0.1326 -3.2468 -6.0648 14 1 -1.3272 -3.0028 -5.2171 15 1 -0.3980 -2.7669 -7.4449 16 1 0.1636 -4.7016 -6.0951 17 7 2.0183 -0.6907 1.1961 18 6 1.4391 -1.7627 1.7846 19 6 2.2132 -2.0714 2.8511 20 6 1.9887 -3.1912 3.8342 21 1 1.7904 -2.7738 4.8214 22 6 3.2368 -4.0741 3.8953 23 8 0.8702 -3.9758 3.4154 24 7 3.2199 -1.1905 2.8574 25 7 3.0756 -0.3860 1.8641 26 1 -0.3634 -1.0249 -0.0756 27 1 -0.3634 0.4470 0.9254 28 1 -0.3633 0.5780 -0.8498 29 1 2.2687 1.9612 -2.3550 30 1 1.0482 1.4286 -3.5361 31 1 0.6674 1.4197 -1.7974 32 1 2.7402 -0.1219 -4.3785 33 1 3.1520 -1.5425 -3.3882 34 1 2.6071 -2.9325 -6.7545 35 1 0.5387 -2.2684 1.4686 36 1 3.0746 -4.8839 4.6067 37 1 3.4352 -4.4915 2.9081 38 1 4.0899 -3.4757 4.2149 39 1 0.6675 -4.7168 4.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119278032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:47 Heat of formation + Delta-G solvation = 21.597953 kcal Electronic energy + Delta-G solvation = -22614.682137 eV Core-core repulsion = 19174.411141 eV Total energy + Delta-G solvation = -3440.270996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.15209 -39.44470 -37.53022 -35.22932 -35.04203 -32.75791 -32.07889 -30.61189 -29.63268 -27.89472 -26.31577 -24.96769 -24.03113 -23.27503 -21.42016 -20.80226 -19.00780 -17.37771 -17.06331 -17.00247 -16.62314 -15.67910 -15.30013 -15.13042 -14.67699 -14.61747 -14.37552 -14.07592 -13.72441 -13.13259 -12.72511 -12.61654 -12.27367 -12.24668 -12.18254 -11.90831 -11.82133 -11.59866 -11.30289 -11.25731 -10.96510 -10.70109 -10.67401 -10.56636 -10.26846 -10.06664 -9.74103 -9.16438 -8.86975 -8.53506 -7.87368 -6.14138 -4.20176 1.76459 2.35747 2.64616 3.00010 3.23465 3.31662 3.34291 3.67043 3.81100 4.33679 4.40814 4.61883 4.66112 4.76970 4.92760 4.99064 5.14170 5.19351 5.20714 5.35660 5.47945 5.51481 5.61846 5.70949 5.73503 5.81724 5.98375 6.08629 6.14472 6.22308 6.66570 6.87908 7.27809 7.34594 7.49012 7.80492 8.09160 8.12159 8.64672 8.67567 8.85641 9.45373 10.94137 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.004528 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.788894 B = 6182.662635 C = 6837.792031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.130 0.870 4 C 0.498 3.502 5 O -0.522 6.522 6 N -0.591 5.591 7 C 0.069 3.931 8 C 0.245 3.755 9 C -0.531 4.531 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.271 5.271 18 C 0.007 3.993 19 C -0.037 4.037 20 C 0.198 3.802 21 H 0.071 0.929 22 C -0.179 4.179 23 O -0.564 6.564 24 N -0.261 5.261 25 N -0.083 5.083 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.189 0.811 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 4.241 16.232 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.148 0.852 4 C 0.281 3.719 5 O -0.397 6.397 6 N -0.323 5.323 7 C -0.075 4.075 8 C 0.126 3.874 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.063 5.063 18 C -0.145 4.145 19 C -0.175 4.175 20 C 0.137 3.863 21 H 0.089 0.911 22 C -0.236 4.236 23 O -0.370 6.370 24 N -0.129 5.129 25 N -0.062 5.062 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.206 0.794 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.206 4.982 15.682 16.983 hybrid contribution -1.649 -1.533 -0.453 2.296 sum -5.854 3.450 15.229 16.676 Atomic orbital electron populations 1.22220 0.89903 1.05280 1.04602 1.21692 0.97342 0.97793 0.81686 0.85206 1.19997 0.80872 0.86842 0.84205 1.90765 1.44584 1.19134 1.85242 1.48089 1.62488 1.14182 1.07519 1.21932 0.98477 0.83214 1.03841 1.19406 0.96563 0.92124 0.79280 1.21417 0.95892 1.29882 1.09801 0.92291 1.24942 0.96146 0.96252 0.96674 1.69934 1.22732 1.40545 1.19835 0.86423 0.82386 0.79760 0.78734 1.19762 1.20856 1.20803 1.46912 1.17521 1.21680 1.20212 1.23175 1.03230 0.92188 0.95878 1.21376 0.95595 1.00658 0.99832 1.19439 0.86224 0.87503 0.93097 0.91139 1.22430 0.98406 0.99814 1.02996 1.86456 1.49530 1.45845 1.55156 1.74891 1.20367 1.03767 1.13922 1.78243 1.03820 1.21651 1.02515 0.90250 0.90374 0.88198 0.93114 0.89808 0.92095 0.94497 0.93666 0.92602 0.79377 0.92023 0.91513 0.90714 0.76758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.48 37.16 0.32 -1.50 16 2 C 0.12 1.80 2.82 -69.08 -0.19 1.60 16 3 H 0.13 1.59 7.48 -51.93 -0.39 1.20 16 4 C 0.50 10.08 6.97 -10.99 -0.08 10.01 16 5 O -0.52 -13.27 15.87 5.55 0.09 -13.18 16 6 N -0.59 -11.82 2.86 -182.96 -0.52 -12.34 16 7 C 0.07 0.96 9.86 59.84 0.59 1.55 16 8 C 0.24 6.22 5.16 -5.19 -0.03 6.19 16 9 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 13 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.27 -4.56 2.85 -55.89 -0.16 -4.72 16 18 C 0.01 0.10 9.83 -17.04 -0.17 -0.06 16 19 C -0.04 -0.58 6.47 -82.78 -0.54 -1.12 16 20 C 0.20 2.32 4.13 -27.89 -0.12 2.20 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.18 -1.94 9.51 37.16 0.35 -1.59 16 23 O -0.56 -6.07 12.71 -35.23 -0.45 -6.52 16 24 N -0.26 -4.65 12.40 33.29 0.41 -4.24 16 25 N -0.08 -1.54 13.17 60.35 0.79 -0.75 16 26 H 0.08 0.98 7.40 -51.93 -0.38 0.59 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.97 5.80 -51.93 -0.30 0.67 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.06 0.64 4.56 -51.93 -0.24 0.40 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.19 2.73 7.31 -52.49 -0.38 2.35 16 36 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.38 2.15 9.08 45.56 0.41 2.56 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -36.31 332.16 -3.97 -40.29 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.58 Total: 1.44 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.28 Total: 4.11 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 1.26 Total: -47.39 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.36 Total: -19.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.31 -3.97 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119278032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.885 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds