Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47358 * 2 1 4 4 O 1.42903 * 109.47207 * 120.00102 * 2 1 3 5 5 C 1.50700 * 109.47002 * 239.99902 * 2 1 3 6 6 C 1.35354 * 126.75622 * 125.25086 * 5 2 1 7 7 N 1.35307 * 106.17746 * 180.12507 * 6 5 2 8 8 C 1.46506 * 125.86476 * 179.90188 * 7 6 5 9 9 H 1.08998 * 109.46566 * 204.71149 * 8 7 6 10 10 C 1.52997 * 109.47289 * 324.71415 * 8 7 6 11 11 C 1.50697 * 109.47015 * 84.71873 * 8 7 6 12 12 O 1.21283 * 120.00261 * 359.97438 * 11 8 7 13 13 N 1.34777 * 120.00075 * 180.02562 * 11 8 7 14 14 C 1.46498 * 119.99953 * 359.97438 * 13 11 8 15 15 C 1.46500 * 120.00084 * 180.02562 * 13 11 8 16 16 C 1.50698 * 109.47587 * 89.99577 * 15 13 11 17 17 H 1.08008 * 119.99838 * 359.97438 * 16 15 13 18 18 C 1.37872 * 120.00427 * 179.97438 * 16 15 13 19 19 N 1.31519 * 119.99735 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00193 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47165 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46942 * 120.00269 * 20 18 16 23 23 H 1.48502 * 109.47660 * 240.00124 * 20 18 16 24 24 N 1.28710 * 108.26584 * 359.63803 * 7 6 5 25 25 N 1.28638 * 110.17794 * 0.22735 * 24 7 6 26 26 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46548 * 300.00537 * 1 2 3 28 28 H 1.09000 * 109.46858 * 59.99899 * 1 2 3 29 29 H 0.96701 * 113.99597 * 59.99723 * 4 2 1 30 30 H 1.08004 * 126.90748 * 0.02562 * 6 5 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 33 33 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 34 34 H 1.09001 * 109.47076 * 90.00302 * 14 13 11 35 35 H 1.08996 * 109.47427 * 210.00785 * 14 13 11 36 36 H 1.08999 * 109.47290 * 330.00489 * 14 13 11 37 37 H 1.08995 * 109.46789 * 209.99681 * 15 13 11 38 38 H 1.08999 * 109.46866 * 329.99207 * 15 13 11 39 39 H 0.97001 * 119.99848 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0323 -0.7104 -1.2305 6 6 2.8924 -0.2210 -2.1539 7 7 3.0536 -1.1993 -3.0747 8 6 3.8988 -1.1231 -4.2690 9 1 3.5251 -1.8155 -5.0232 10 6 3.8687 0.3020 -4.8251 11 6 5.3145 -1.4912 -3.9067 12 8 5.5905 -1.7875 -2.7635 13 7 6.2743 -1.4901 -4.8529 14 6 5.9411 -1.1316 -6.2338 15 6 7.6505 -1.8485 -4.5009 16 6 7.8409 -3.3341 -4.6671 17 1 7.0189 -3.9499 -5.0011 18 6 9.0645 -3.9073 -4.3927 19 7 10.0653 -3.1575 -3.9854 20 14 9.3003 -5.7489 -4.5980 21 1 8.0303 -6.3617 -5.0636 22 1 10.3679 -6.0026 -5.5986 23 1 9.6905 -6.3463 -3.2957 24 7 2.3412 -2.2102 -2.7183 25 7 1.7199 -1.9508 -1.6222 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2329 30 1 3.3554 0.7547 -2.1562 31 1 4.4979 0.3587 -5.7133 32 1 4.2424 0.9943 -4.0707 33 1 2.8447 0.5682 -5.0871 34 1 6.0615 -0.0568 -6.3693 35 1 6.6055 -1.6606 -6.9169 36 1 4.9084 -1.4107 -6.4425 37 1 8.3426 -1.3181 -5.1548 38 1 7.8444 -1.5709 -3.4648 39 1 10.9261 -3.5608 -3.7921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119278033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = 21.590438 kcal Electronic energy + Delta-G solvation = -22518.860925 eV Core-core repulsion = 19078.589603 eV Total energy + Delta-G solvation = -3440.271321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.23315 -39.54202 -37.47881 -35.21946 -35.14621 -32.77001 -32.09283 -30.74292 -29.64593 -27.83577 -26.50862 -24.97302 -24.05630 -23.31275 -21.60235 -20.96787 -19.15104 -17.65244 -17.10257 -16.61751 -16.44144 -15.71033 -15.34032 -15.25788 -14.99043 -14.66760 -14.29995 -13.87908 -13.79961 -13.28959 -12.83140 -12.67777 -12.41715 -12.26861 -12.14480 -12.10365 -11.74377 -11.68982 -11.29834 -11.16240 -10.97507 -10.84088 -10.70500 -10.34802 -10.27512 -10.22459 -9.74183 -9.24883 -9.03963 -8.53049 -7.92467 -6.14406 -4.19843 1.65649 2.28594 2.55937 2.95389 3.25227 3.33793 3.37494 3.60066 4.18712 4.36687 4.39451 4.48368 4.54551 4.60902 4.70175 4.90206 5.06484 5.15857 5.20436 5.25240 5.33314 5.36470 5.53559 5.56805 5.63660 5.71529 5.88488 6.00070 6.04937 6.19504 6.56906 6.82393 7.22606 7.31058 7.55792 7.80759 8.06173 8.09701 8.60111 8.62237 8.85398 9.46019 10.93872 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.004182 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.321440 B = 6693.180463 C = 7306.987427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.197 3.803 3 H 0.111 0.889 4 O -0.556 6.556 5 C -0.068 4.068 6 C -0.016 4.016 7 N -0.264 5.264 8 C 0.120 3.880 9 H 0.134 0.866 10 C -0.171 4.171 11 C 0.496 3.504 12 O -0.518 6.518 13 N -0.591 5.591 14 C 0.073 3.927 15 C 0.246 3.754 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.282 1.282 24 N -0.074 5.074 25 N -0.263 5.263 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.382 0.618 30 H 0.186 0.814 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 11.068 -2.083 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.136 3.864 3 H 0.129 0.871 4 O -0.361 6.361 5 C -0.206 4.206 6 C -0.168 4.168 7 N -0.057 5.057 8 C 0.013 3.987 9 H 0.152 0.848 10 C -0.229 4.229 11 C 0.278 3.722 12 O -0.394 6.394 13 N -0.323 5.323 14 C -0.070 4.070 15 C 0.128 3.872 16 C -0.570 4.570 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 N -0.053 5.053 25 N -0.131 5.131 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.203 0.797 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.737 10.027 -1.677 18.735 hybrid contribution 0.545 -0.558 -0.320 0.843 sum -15.192 9.468 -1.997 18.012 Atomic orbital electron populations 1.22429 0.95274 1.03403 1.02410 1.19991 0.92862 0.94579 0.78995 0.87105 1.86559 1.77519 1.29804 1.42207 1.22683 1.02707 0.94319 1.00892 1.23205 1.03270 0.97934 0.92368 1.46905 1.30117 1.10093 1.18546 1.21688 0.90355 1.02067 0.84546 0.84825 1.22419 1.04648 0.92223 1.03636 1.20013 0.85675 0.79933 0.86544 1.90787 1.81388 1.47525 1.19673 1.48106 1.11260 1.65617 1.07346 1.21927 1.00984 0.99707 0.84431 1.19392 0.74068 0.95934 0.97821 1.21431 0.96913 0.92686 1.46009 0.92309 1.24933 0.95718 0.98592 0.94750 1.69935 1.02454 1.35562 1.45215 0.86415 0.78112 0.84854 0.77917 1.19721 1.20839 1.20752 1.78280 1.06168 1.10665 1.10150 1.74916 1.19437 1.13478 1.05257 0.91462 0.91454 0.91697 0.76979 0.79719 0.87648 0.90659 0.90415 0.92773 0.89989 0.92256 0.94446 0.93706 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.51 37.16 0.35 -1.26 16 2 C 0.20 2.22 4.09 -27.88 -0.11 2.11 16 3 H 0.11 1.03 8.12 -51.93 -0.42 0.60 16 4 O -0.56 -7.25 13.33 -35.23 -0.47 -7.72 16 5 C -0.07 -0.98 6.10 -82.77 -0.50 -1.48 16 6 C -0.02 -0.23 10.59 -17.05 -0.18 -0.41 16 7 N -0.26 -4.20 2.75 -55.89 -0.15 -4.36 16 8 C 0.12 1.67 2.85 -69.08 -0.20 1.47 16 9 H 0.13 1.65 7.40 -51.93 -0.38 1.26 16 10 C -0.17 -1.54 8.47 37.16 0.31 -1.22 16 11 C 0.50 9.72 7.14 -10.99 -0.08 9.64 16 12 O -0.52 -13.06 15.99 5.55 0.09 -12.97 16 13 N -0.59 -11.43 2.86 -182.96 -0.52 -11.95 16 14 C 0.07 0.96 8.80 59.85 0.53 1.48 16 15 C 0.25 6.15 5.16 -5.19 -0.03 6.12 16 16 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 17 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 20 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 N -0.07 -1.34 13.17 60.35 0.79 -0.55 16 25 N -0.26 -4.51 12.40 33.29 0.41 -4.10 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.38 4.26 9.04 45.56 0.41 4.67 16 30 H 0.19 1.94 7.31 -52.48 -0.38 1.55 16 31 H 0.11 0.79 4.53 -51.93 -0.24 0.56 16 32 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.55 6.95 -51.93 -0.36 0.19 16 35 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -36.79 330.98 -3.99 -40.78 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.52 Total: 1.46 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.33 Total: 3.03 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.27 Total: -46.34 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.38 Total: -20.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.79 -3.99 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119278033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.367 kcal (2) G-P(sol) polarization free energy of solvation -36.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds