Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 O 1.42905 * 109.47264 * 239.99911 * 2 1 3 5 5 C 1.50699 * 109.47078 * 120.00035 * 2 1 3 6 6 C 1.35353 * 126.75405 * 125.00012 * 5 2 1 7 7 N 1.35311 * 106.17754 * 179.97438 * 6 5 2 8 8 C 1.46493 * 125.86780 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47166 * 205.00345 * 8 7 6 10 10 C 1.52998 * 109.47510 * 325.00113 * 8 7 6 11 11 C 1.50698 * 109.47073 * 85.00017 * 8 7 6 12 12 O 1.21280 * 120.00102 * 0.02562 * 11 8 7 13 13 N 1.34783 * 119.99977 * 179.97438 * 11 8 7 14 14 C 1.46494 * 120.00176 * 0.02562 * 13 11 8 15 15 C 1.46501 * 119.99676 * 180.02562 * 13 11 8 16 16 C 1.50702 * 109.47417 * 90.00170 * 15 13 11 17 17 H 1.08006 * 119.99689 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00334 * 179.97438 * 16 15 13 19 19 N 1.31525 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47474 * 60.00000 * 20 18 16 22 22 H 1.48501 * 109.47311 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47192 * 299.99956 * 20 18 16 24 24 N 1.28716 * 108.26087 * 0.02562 * 7 6 5 25 25 N 1.28630 * 110.18126 * 359.71855 * 24 7 6 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.46832 * 59.99981 * 1 2 3 29 29 H 0.96702 * 113.99404 * 300.00214 * 4 2 1 30 30 H 1.07997 * 126.90668 * 359.96674 * 6 5 2 31 31 H 1.09008 * 109.47070 * 60.00060 * 10 8 7 32 32 H 1.09001 * 109.47808 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.47372 * 300.00134 * 10 8 7 34 34 H 1.08994 * 109.47537 * 89.99524 * 14 13 11 35 35 H 1.09000 * 109.46968 * 210.00265 * 14 13 11 36 36 H 1.09000 * 109.46861 * 329.99680 * 14 13 11 37 37 H 1.09007 * 109.46820 * 210.00049 * 15 13 11 38 38 H 1.09000 * 109.47334 * 329.99960 * 15 13 11 39 39 H 0.96995 * 119.99566 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2304 6 6 2.8887 -1.7579 1.2680 7 7 3.0542 -2.0628 2.5759 8 6 3.8988 -3.1355 3.1069 9 1 3.5251 -3.4423 4.0838 10 6 3.8679 -4.3297 2.1510 11 6 5.3149 -2.6386 3.2442 12 8 5.5913 -1.5003 2.9299 13 7 6.2740 -3.4589 3.7173 14 6 5.9401 -4.8337 4.0975 15 6 7.6505 -2.9756 3.8513 16 6 7.8413 -2.3756 5.2205 17 1 7.0195 -2.3566 5.9210 18 6 9.0652 -1.8519 5.5793 19 7 10.0661 -1.8755 4.7264 20 14 9.3019 -1.1089 7.2767 21 1 9.0366 -2.1414 8.3104 22 1 10.6971 -0.6189 7.4124 23 1 8.3599 0.0250 7.4564 24 7 2.3412 -1.2490 3.2731 25 7 1.7238 -0.4263 2.5008 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -1.5953 -1.2328 30 1 3.3475 -2.2511 0.4239 31 1 4.2416 -4.0229 1.1741 32 1 4.4966 -5.1277 2.5459 33 1 2.8436 -4.6891 2.0516 34 1 6.0606 -5.4888 3.2348 35 1 6.6040 -5.1607 4.8977 36 1 4.9071 -4.8743 4.4431 37 1 8.3422 -3.8078 3.7196 38 1 7.8451 -2.2179 3.0923 39 1 10.9270 -1.5067 4.9787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119278034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = 22.462762 kcal Electronic energy + Delta-G solvation = -22562.485412 eV Core-core repulsion = 19122.251917 eV Total energy + Delta-G solvation = -3440.233495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.23300 -39.53834 -37.67258 -35.22945 -35.20313 -32.78673 -31.97925 -30.66096 -29.79827 -27.83037 -26.50568 -24.99951 -24.00532 -23.30073 -21.44071 -21.14051 -19.21420 -17.76175 -17.10436 -16.61985 -16.43591 -15.84029 -15.37270 -15.20801 -14.96661 -14.65577 -14.33198 -13.87907 -13.78249 -13.28367 -12.87438 -12.67957 -12.42198 -12.25487 -12.23157 -12.05634 -11.76293 -11.66228 -11.29175 -11.26540 -11.00733 -10.84294 -10.67135 -10.52569 -10.27162 -10.19688 -9.77657 -9.22661 -8.98972 -8.52002 -7.92390 -6.13857 -4.19519 1.66586 2.29023 2.59236 2.95700 3.27623 3.32583 3.36391 3.60250 4.07393 4.19401 4.36907 4.45430 4.54213 4.64740 4.79519 4.92718 5.07183 5.15911 5.20637 5.24726 5.32008 5.36565 5.53730 5.58199 5.64005 5.76203 5.92143 5.97692 6.03286 6.15403 6.57904 6.82819 7.22914 7.31076 7.37302 7.80881 8.06520 8.10048 8.61412 8.62863 8.85174 9.46189 10.94349 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.004084 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.411808 B = 6855.015438 C = 7241.035945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.195 3.805 3 H 0.116 0.884 4 O -0.554 6.554 5 C -0.067 4.067 6 C -0.020 4.020 7 N -0.264 5.264 8 C 0.120 3.880 9 H 0.134 0.866 10 C -0.171 4.171 11 C 0.496 3.504 12 O -0.519 6.519 13 N -0.591 5.591 14 C 0.073 3.927 15 C 0.247 3.753 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.074 5.074 25 N -0.261 5.261 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.374 0.626 30 H 0.187 0.813 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -7.889 -8.894 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.134 3.866 3 H 0.133 0.867 4 O -0.358 6.358 5 C -0.206 4.206 6 C -0.171 4.171 7 N -0.057 5.057 8 C 0.014 3.986 9 H 0.152 0.848 10 C -0.229 4.229 11 C 0.279 3.721 12 O -0.394 6.394 13 N -0.323 5.323 14 C -0.070 4.070 15 C 0.129 3.871 16 C -0.572 4.572 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 N -0.053 5.053 25 N -0.129 5.129 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.204 0.796 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.759 -6.248 -7.761 18.645 hybrid contribution 0.534 -0.597 0.296 0.854 sum -15.225 -6.845 -7.465 18.286 Atomic orbital electron populations 1.22402 0.94933 1.02663 1.03240 1.19913 0.92901 0.95257 0.78512 0.86664 1.86642 1.77461 1.29219 1.42446 1.22676 1.02917 0.99262 0.95711 1.23066 1.03671 1.02001 0.88385 1.46888 1.30085 1.23454 1.05249 1.21680 0.90369 0.85267 1.01324 0.84838 1.22418 1.04608 0.96230 0.99662 1.20012 0.85679 0.86493 0.79958 1.90783 1.81381 1.17809 1.49424 1.48107 1.11271 1.11438 1.61525 1.21926 1.00970 0.83588 1.00562 1.19383 0.74056 0.95668 0.98036 1.21357 0.96892 1.39856 0.99083 0.92414 1.24927 0.95700 0.95554 0.97753 1.69916 1.02467 1.45612 1.35196 0.86528 0.77260 0.79726 0.83785 1.20125 1.21048 1.20085 1.78291 1.06168 1.00143 1.20714 1.74947 1.19639 1.18103 1.00211 0.92471 0.90606 0.91409 0.77840 0.79644 0.90638 0.87659 0.90449 0.92774 0.89990 0.92261 0.94454 0.93718 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.51 37.16 0.35 -1.22 16 2 C 0.20 2.19 4.14 -27.88 -0.12 2.08 16 3 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 4 O -0.55 -5.63 12.81 -35.23 -0.45 -6.08 16 5 C -0.07 -0.97 6.45 -82.78 -0.53 -1.51 16 6 C -0.02 -0.28 9.89 -17.05 -0.17 -0.45 16 7 N -0.26 -4.21 2.75 -55.90 -0.15 -4.37 16 8 C 0.12 1.67 2.85 -69.09 -0.20 1.48 16 9 H 0.13 1.65 7.40 -51.93 -0.38 1.26 16 10 C -0.17 -1.53 8.47 37.16 0.31 -1.22 16 11 C 0.50 9.76 7.14 -10.98 -0.08 9.68 16 12 O -0.52 -13.11 16.00 5.56 0.09 -13.02 16 13 N -0.59 -11.46 2.86 -182.96 -0.52 -11.98 16 14 C 0.07 0.96 8.80 59.84 0.53 1.49 16 15 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 16 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 17 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 N -0.07 -1.36 13.16 60.35 0.79 -0.57 16 25 N -0.26 -4.57 12.40 33.29 0.41 -4.15 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.37 2.31 8.86 45.56 0.40 2.71 16 30 H 0.19 2.00 7.19 -52.49 -0.38 1.62 16 31 H 0.07 0.67 7.17 -51.92 -0.37 0.30 16 32 H 0.11 0.79 4.53 -51.93 -0.24 0.56 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.55 6.95 -51.93 -0.36 0.19 16 35 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 329.89 15.07 4.97 4.97 Total: -1.00 -36.87 329.89 -4.01 -40.88 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.52 Total: -0.05 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.35 Total: 3.01 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 1.27 Total: -46.50 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.36 Total: -19.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.87 -4.01 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119278034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.342 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds