Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47148 * 2 1 4 4 O 1.42901 * 109.46976 * 120.00356 * 2 1 3 5 5 C 1.50704 * 109.47041 * 240.00099 * 2 1 3 6 6 C 1.35350 * 126.74769 * 125.00257 * 5 2 1 7 7 N 1.35310 * 106.17199 * 179.97438 * 6 5 2 8 8 C 1.46505 * 125.86770 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47007 * 154.99650 * 8 7 6 10 10 C 1.53000 * 109.47211 * 34.99324 * 8 7 6 11 11 C 1.50702 * 109.46828 * 274.99717 * 8 7 6 12 12 O 1.21278 * 120.00211 * 13.91760 * 11 8 7 13 13 N 1.34782 * 119.99873 * 193.92229 * 11 8 7 14 14 C 1.46497 * 119.99771 * 3.69856 * 13 11 8 15 15 C 1.46492 * 120.00016 * 183.69412 * 13 11 8 16 16 C 1.50703 * 109.46810 * 90.00145 * 15 13 11 17 17 H 1.08000 * 120.00028 * 359.97438 * 16 15 13 18 18 C 1.37881 * 119.99819 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00126 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99567 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46820 * 90.00496 * 20 18 16 22 22 H 1.48505 * 109.46631 * 210.00093 * 20 18 16 23 23 H 1.48493 * 109.47192 * 330.00255 * 20 18 16 24 24 N 1.28716 * 108.26725 * 0.25771 * 7 6 5 25 25 N 1.28631 * 110.17322 * 359.56282 * 24 7 6 26 26 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47197 * 299.99728 * 1 2 3 28 28 H 1.08999 * 109.47400 * 60.00134 * 1 2 3 29 29 H 0.96702 * 113.99953 * 60.00300 * 4 2 1 30 30 H 1.08004 * 126.91544 * 359.94997 * 6 5 2 31 31 H 1.08998 * 109.47079 * 295.78575 * 10 8 7 32 32 H 1.08997 * 109.46855 * 55.78123 * 10 8 7 33 33 H 1.08994 * 109.47425 * 175.78409 * 10 8 7 34 34 H 1.09007 * 109.47085 * 84.69408 * 14 13 11 35 35 H 1.09001 * 109.47229 * 204.69159 * 14 13 11 36 36 H 1.08997 * 109.47713 * 324.69478 * 14 13 11 37 37 H 1.08999 * 109.47345 * 209.99972 * 15 13 11 38 38 H 1.09001 * 109.47351 * 330.00305 * 15 13 11 39 39 H 0.97005 * 119.99806 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.8888 -0.2191 -2.1563 7 7 3.0543 -1.1993 -3.0743 8 6 3.8998 -1.1232 -4.2684 9 1 4.1968 -2.1282 -4.5679 10 6 5.1475 -0.2939 -3.9578 11 6 3.1298 -0.4720 -5.3883 12 8 2.0959 0.1160 -5.1516 13 7 3.5903 -0.5433 -6.6531 14 6 4.7951 -1.3216 -6.9512 15 6 2.8859 0.1575 -7.7295 16 6 3.4446 1.5498 -7.8722 17 1 4.2441 1.8798 -7.2254 18 6 2.9351 2.4024 -8.8286 19 7 1.9612 2.0008 -9.6159 20 14 3.6281 4.1281 -9.0059 21 1 4.7526 4.1126 -9.9758 22 1 2.5642 5.0408 -9.4961 23 1 4.1184 4.6025 -7.6870 24 7 2.3375 -2.2083 -2.7209 25 7 1.7201 -1.9507 -1.6223 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7210 -1.5953 1.2328 30 1 3.3475 0.7587 -2.1615 31 1 4.8551 0.7314 -3.7310 32 1 5.6643 -0.7227 -3.0993 33 1 5.8119 -0.2995 -4.8218 34 1 4.5252 -2.3677 -7.0964 35 1 5.2607 -0.9372 -7.8587 36 1 5.4958 -1.2392 -6.1204 37 1 3.0199 -0.3855 -8.6651 38 1 1.8237 0.2148 -7.4917 39 1 1.6030 2.6005 -10.2889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119278035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = 17.640962 kcal Electronic energy + Delta-G solvation = -22537.554898 eV Core-core repulsion = 19097.112314 eV Total energy + Delta-G solvation = -3440.442584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.24175 -39.51361 -37.50638 -35.24195 -35.07690 -32.77677 -32.10115 -30.74480 -29.61447 -27.94085 -26.37053 -25.00693 -24.04673 -23.33241 -21.61447 -20.96088 -19.10403 -17.67593 -17.08504 -16.69573 -16.38174 -15.74137 -15.51021 -15.05160 -14.87937 -14.68665 -14.39749 -13.98487 -13.75011 -13.22733 -12.76896 -12.68615 -12.30869 -12.28125 -12.13138 -12.04598 -11.84173 -11.71423 -11.33231 -11.15453 -11.03205 -10.86425 -10.71532 -10.38939 -10.31097 -10.24215 -9.80288 -9.27472 -9.03386 -8.56925 -7.92756 -6.17760 -4.24151 1.66126 2.26587 2.54167 2.93424 3.20624 3.28295 3.30871 3.61582 4.19929 4.30933 4.38857 4.48668 4.56633 4.61860 4.71694 4.95054 5.12940 5.14521 5.16955 5.29625 5.37435 5.41336 5.62382 5.65472 5.68955 5.80263 5.98644 6.02767 6.06248 6.22100 6.56686 6.82332 7.22732 7.29808 7.49234 7.76358 8.04708 8.07029 8.57370 8.60116 8.80965 9.41460 10.90434 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.004213 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.475469 B = 6645.014178 C = 7183.236670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.197 3.803 3 H 0.113 0.887 4 O -0.559 6.559 5 C -0.069 4.069 6 C -0.007 4.007 7 N -0.267 5.267 8 C 0.120 3.880 9 H 0.131 0.869 10 C -0.162 4.162 11 C 0.498 3.502 12 O -0.523 6.523 13 N -0.590 5.590 14 C 0.069 3.931 15 C 0.245 3.755 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.274 1.274 24 N -0.081 5.081 25 N -0.262 5.262 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.380 0.620 30 H 0.187 0.813 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -5.634 13.668 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.136 3.864 3 H 0.131 0.869 4 O -0.364 6.364 5 C -0.207 4.207 6 C -0.159 4.159 7 N -0.059 5.059 8 C 0.014 3.986 9 H 0.148 0.852 10 C -0.220 4.220 11 C 0.281 3.719 12 O -0.399 6.399 13 N -0.322 5.322 14 C -0.075 4.075 15 C 0.127 3.873 16 C -0.572 4.572 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.060 5.060 25 N -0.130 5.130 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.204 0.796 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.618 -6.126 13.338 15.716 hybrid contribution 0.539 1.538 -0.537 1.716 sum 6.157 -4.588 12.802 14.928 Atomic orbital electron populations 1.22427 0.95062 1.03433 1.02765 1.20004 0.93193 0.94507 0.78662 0.86927 1.86535 1.77477 1.29713 1.42667 1.22656 1.02296 0.94350 1.01448 1.23252 1.03686 0.97294 0.91637 1.46926 1.30737 1.10496 1.17734 1.21716 0.90233 1.04239 0.82419 0.85160 1.22220 0.94612 1.00773 1.04411 1.19983 0.86133 0.81937 0.83831 1.90755 1.23496 1.43045 1.82595 1.48100 1.27308 1.49106 1.07671 1.21941 0.87585 0.95315 1.02666 1.19406 0.93591 0.91243 0.83094 1.21370 1.19856 0.97884 1.18059 0.92358 1.24944 0.94806 0.98765 0.95466 1.69927 1.25675 1.36676 1.20695 0.86474 0.78660 0.83816 0.78339 1.20508 1.20979 1.19884 1.78241 1.06099 1.12023 1.09648 1.74890 1.18588 1.14305 1.05228 0.91516 0.91433 0.91277 0.77187 0.79624 0.90306 0.90313 0.88137 0.93073 0.89766 0.92086 0.94487 0.93657 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.51 37.16 0.35 -1.57 16 2 C 0.20 2.27 4.09 -27.88 -0.11 2.16 16 3 H 0.11 1.11 8.12 -51.93 -0.42 0.69 16 4 O -0.56 -6.41 13.33 -35.23 -0.47 -6.88 16 5 C -0.07 -1.00 6.10 -82.78 -0.50 -1.51 16 6 C -0.01 -0.10 10.41 -17.05 -0.18 -0.28 16 7 N -0.27 -4.21 2.85 -55.89 -0.16 -4.37 16 8 C 0.12 1.69 2.82 -69.08 -0.19 1.49 16 9 H 0.13 1.52 7.48 -51.93 -0.39 1.13 16 10 C -0.16 -1.68 8.47 37.16 0.31 -1.37 16 11 C 0.50 9.69 6.97 -10.98 -0.08 9.61 16 12 O -0.52 -12.78 15.88 5.56 0.09 -12.70 16 13 N -0.59 -11.45 2.86 -182.96 -0.52 -11.97 16 14 C 0.07 0.92 9.86 59.85 0.59 1.51 16 15 C 0.25 6.09 5.16 -5.20 -0.03 6.07 16 16 C -0.53 -14.26 9.39 -34.44 -0.32 -14.58 16 17 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 N -0.08 -1.43 13.17 60.35 0.79 -0.63 16 25 N -0.26 -4.39 12.40 33.29 0.41 -3.98 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.38 3.54 9.04 45.56 0.41 3.96 16 30 H 0.19 2.15 7.42 -52.48 -0.39 1.76 16 31 H 0.08 0.88 7.40 -51.93 -0.38 0.49 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.91 5.80 -51.93 -0.30 0.61 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 36 H 0.06 0.61 4.56 -51.93 -0.24 0.38 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -34.98 333.00 -3.97 -38.95 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.59 Total: 2.48 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.26 Total: 3.16 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.26 Total: -45.91 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.38 Total: -19.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.98 -3.97 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119278035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds