Wall clock time and date at job start Tue Mar 31 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99771 * 2 1 4 4 O 1.20829 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00248 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47404 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47148 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47148 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47251 * 180.02562 * 8 7 6 10 10 C 1.35317 * 125.87155 * 125.32590 * 9 8 7 11 11 C 1.35352 * 106.17693 * 180.11507 * 10 9 8 12 12 C 1.50700 * 126.75361 * 179.84844 * 11 10 9 13 13 N 1.46498 * 109.46769 * 94.71485 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47290 * 120.00044 * 18 16 14 21 21 H 1.48503 * 109.47163 * 240.00049 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 11 10 9 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 11 10 24 24 H 1.08994 * 109.47105 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47463 * 300.00693 * 1 2 3 26 26 H 1.09003 * 109.47322 * 60.00118 * 1 2 3 27 27 H 1.09008 * 109.46763 * 59.99546 * 5 3 2 28 28 H 1.08997 * 109.47143 * 300.00194 * 5 3 2 29 29 H 1.08996 * 109.46922 * 60.00029 * 6 5 3 30 30 H 1.09000 * 109.47186 * 299.99821 * 6 5 3 31 31 H 1.09006 * 109.47270 * 60.00237 * 7 6 5 32 32 H 1.08997 * 109.47293 * 300.00386 * 7 6 5 33 33 H 1.08998 * 109.47402 * 60.00253 * 8 7 6 34 34 H 1.09000 * 109.47186 * 299.99848 * 8 7 6 35 35 H 1.08002 * 126.91295 * 359.96910 * 10 9 8 36 36 H 1.09004 * 109.47210 * 334.71843 * 12 11 10 37 37 H 1.08994 * 109.47121 * 214.71813 * 12 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 6 5.5279 2.8223 0.0011 8 6 5.9617 4.2895 0.0009 9 7 7.4246 4.3663 0.0015 10 6 8.1836 5.0408 -0.8930 11 6 9.4699 4.8421 -0.5218 12 6 10.6993 5.3853 -1.2034 13 7 11.1074 6.6328 -0.5528 14 6 12.2108 7.3093 -1.0003 15 1 12.7775 6.9253 -1.8356 16 6 12.6008 8.4883 -0.3802 17 7 11.9104 8.9559 0.6383 18 14 14.1055 9.4114 -0.9910 19 1 14.7008 8.6826 -2.1397 20 1 13.7079 10.7754 -1.4231 21 1 15.1038 9.5104 0.1040 22 7 9.4351 4.0734 0.5725 23 7 8.2088 3.8088 0.8566 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7811 0.8908 29 1 3.6099 3.2368 0.8893 30 1 3.6107 3.2357 -0.8907 31 1 5.9185 2.3276 -0.8883 32 1 5.9169 2.3289 0.8917 33 1 5.5713 4.7839 0.8904 34 1 5.5727 4.7833 -0.8895 35 1 7.8334 5.6192 -1.7352 36 1 10.4774 5.5786 -2.2530 37 1 11.5067 4.6567 -1.1310 38 1 10.5986 6.9774 0.1977 39 1 12.1827 9.7800 1.0713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119333497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:19 Heat of formation + Delta-G solvation = 13.971255 kcal Electronic energy + Delta-G solvation = -20612.825061 eV Core-core repulsion = 17172.223347 eV Total energy + Delta-G solvation = -3440.601714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.89378 -40.92048 -37.31220 -36.40662 -34.85917 -33.66166 -31.79009 -30.44379 -29.76928 -28.13109 -25.81520 -25.47930 -22.86316 -22.47714 -21.45241 -20.99883 -20.32106 -18.04004 -17.41031 -17.23230 -16.98867 -16.78574 -16.27469 -15.61333 -14.64751 -14.54175 -14.28752 -14.15264 -13.69730 -13.40584 -13.26856 -13.07006 -12.63394 -12.51548 -12.43626 -12.11108 -11.85852 -11.77115 -11.31759 -11.22444 -11.11163 -10.95704 -10.84684 -10.80092 -10.38482 -10.03471 -9.82934 -9.66808 -8.85925 -8.78757 -6.88457 -5.71261 -3.00772 1.73241 1.89173 2.19492 2.54055 2.96477 3.47506 3.52873 3.55438 4.09669 4.19958 4.30580 4.51854 4.61890 4.64954 4.67734 4.70175 4.80097 4.83800 4.97691 5.07025 5.08863 5.10300 5.34540 5.41987 5.52074 5.62211 5.67658 5.77915 5.91564 5.94489 6.21292 6.45889 6.70289 6.80245 6.86058 7.25866 7.74273 8.46083 8.89995 9.57831 10.14086 10.49977 11.51623 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.063898 B = 0.002092 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.092798 B =13382.116496 C =13516.665310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.113 4.113 6 C -0.106 4.106 7 C -0.132 4.132 8 C 0.119 3.881 9 N -0.300 5.300 10 C -0.044 4.044 11 C -0.007 4.007 12 C 0.233 3.767 13 N -0.726 5.726 14 C -0.239 4.239 15 H 0.074 0.926 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.292 1.292 22 N -0.256 5.256 23 N -0.097 5.097 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.385 0.615 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 -17.733 -3.805 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.395 6.395 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.171 4.171 8 C -0.003 4.003 9 N -0.094 5.094 10 C -0.195 4.195 11 C -0.145 4.145 12 C 0.104 3.896 13 N -0.371 5.371 14 C -0.370 4.370 15 H 0.092 0.908 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.219 1.219 22 N -0.123 5.123 23 N -0.076 5.076 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.205 0.795 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.219 0.781 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.927 -18.280 -2.645 30.227 hybrid contribution 0.109 1.467 -0.944 1.748 sum -23.819 -16.813 -3.588 29.375 Atomic orbital electron populations 1.23284 0.76145 1.03808 1.02652 1.86514 1.23643 1.33594 1.84088 1.23881 0.92355 0.81298 0.72164 1.90692 1.67344 1.36325 1.45103 1.21403 0.87218 1.00016 1.06440 1.21348 0.94344 0.94260 1.04514 1.21861 0.95389 0.95114 1.04692 1.22003 0.73789 0.99113 1.05367 1.47285 1.08644 1.34092 1.19347 1.23428 0.91624 1.04298 1.00159 1.22467 0.95749 1.00429 0.95829 1.18942 0.88337 0.88978 0.93391 1.42328 1.33017 1.22679 1.39076 1.19290 1.02983 1.02781 1.11922 0.90814 1.24767 0.99454 0.98480 0.98329 1.69698 1.41002 1.22964 1.24394 0.86079 0.82482 0.79580 0.77808 1.20465 1.21951 1.21870 1.75092 1.09759 1.14245 1.13213 1.78202 0.95769 1.18919 1.14683 0.88012 0.91807 0.91823 0.87333 0.87172 0.90245 0.90407 0.90625 0.89540 0.88385 0.87727 0.79493 0.94504 0.94367 0.78111 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.62 10.57 -39.26 -0.41 -3.03 16 3 C 0.46 3.55 7.96 36.01 0.29 3.84 16 4 O -0.51 -5.38 15.73 -18.75 -0.29 -5.67 16 5 C -0.11 -0.57 5.81 -27.88 -0.16 -0.73 16 6 C -0.11 -0.59 4.50 -26.73 -0.12 -0.71 16 7 C -0.13 -0.89 5.34 -26.73 -0.14 -1.03 16 8 C 0.12 1.00 6.46 -4.05 -0.03 0.97 16 9 N -0.30 -4.16 3.44 -61.27 -0.21 -4.37 16 10 C -0.04 -0.68 11.50 -17.04 -0.20 -0.87 16 11 C -0.01 -0.13 6.61 -82.78 -0.55 -0.68 16 12 C 0.23 4.97 6.82 -5.19 -0.04 4.93 16 13 N -0.73 -19.31 5.59 -61.09 -0.34 -19.65 16 14 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 15 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 N -0.26 -5.28 12.41 33.29 0.41 -4.87 16 23 N -0.10 -1.70 12.91 60.35 0.78 -0.92 16 24 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 27 H 0.11 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.39 11.06 7.66 -40.82 -0.31 10.75 16 39 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -36.92 343.14 -5.09 -42.01 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.77 Total: 2.49 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.12 Total: -0.53 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 1.36 Total: -58.13 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.71 Total: -8.70 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.92 -5.09 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds