Wall clock time and date at job start Tue Mar 31 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99771 * 2 1 4 4 O 1.20829 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00248 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47404 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47148 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47148 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47251 * 180.02562 * 8 7 6 10 10 C 1.35317 * 125.87155 * 125.32590 * 9 8 7 11 11 C 1.35352 * 106.17693 * 180.11507 * 10 9 8 12 12 C 1.50700 * 126.75361 * 179.84844 * 11 10 9 13 13 N 1.46498 * 109.46769 * 94.71485 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72432 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47290 * 120.00044 * 18 16 14 21 21 H 1.48503 * 109.47163 * 240.00049 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 11 10 9 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 11 10 24 24 H 1.08994 * 109.47105 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47463 * 300.00693 * 1 2 3 26 26 H 1.09003 * 109.47322 * 60.00118 * 1 2 3 27 27 H 1.09008 * 109.46763 * 59.99546 * 5 3 2 28 28 H 1.08997 * 109.47143 * 300.00194 * 5 3 2 29 29 H 1.08996 * 109.46922 * 60.00029 * 6 5 3 30 30 H 1.09000 * 109.47186 * 299.99821 * 6 5 3 31 31 H 1.09006 * 109.47270 * 60.00237 * 7 6 5 32 32 H 1.08997 * 109.47293 * 300.00386 * 7 6 5 33 33 H 1.08998 * 109.47402 * 60.00253 * 8 7 6 34 34 H 1.09000 * 109.47186 * 299.99848 * 8 7 6 35 35 H 1.08002 * 126.91295 * 359.96910 * 10 9 8 36 36 H 1.09004 * 109.47210 * 334.71843 * 12 11 10 37 37 H 1.08994 * 109.47121 * 214.71813 * 12 11 10 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 39 39 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 6 5.5279 2.8223 0.0011 8 6 5.9617 4.2895 0.0009 9 7 7.4246 4.3663 0.0015 10 6 8.1836 5.0408 -0.8930 11 6 9.4699 4.8421 -0.5218 12 6 10.6993 5.3853 -1.2034 13 7 11.1074 6.6328 -0.5528 14 6 12.2108 7.3093 -1.0003 15 1 12.7775 6.9253 -1.8356 16 6 12.6008 8.4883 -0.3802 17 7 11.9104 8.9559 0.6383 18 14 14.1055 9.4114 -0.9910 19 1 14.7008 8.6826 -2.1397 20 1 13.7079 10.7754 -1.4231 21 1 15.1038 9.5104 0.1040 22 7 9.4351 4.0734 0.5725 23 7 8.2088 3.8088 0.8566 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7811 0.8908 29 1 3.6099 3.2368 0.8893 30 1 3.6107 3.2357 -0.8907 31 1 5.9185 2.3276 -0.8883 32 1 5.9169 2.3289 0.8917 33 1 5.5713 4.7839 0.8904 34 1 5.5727 4.7833 -0.8895 35 1 7.8334 5.6192 -1.7352 36 1 10.4774 5.5786 -2.2530 37 1 11.5067 4.6567 -1.1310 38 1 10.5986 6.9774 0.1977 39 1 12.1827 9.7800 1.0713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119333497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:18 Heat of formation + Delta-G solvation = -12.007201 kcal Electronic energy + Delta-G solvation = -20613.951572 eV Core-core repulsion = 17172.223347 eV Total energy + Delta-G solvation = -3441.728224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.16411 -41.49306 -37.90226 -37.26014 -36.55258 -34.70140 -33.59097 -31.60655 -31.04550 -28.64704 -27.56688 -26.24383 -24.76383 -23.26670 -22.65228 -21.52672 -21.51194 -19.31490 -18.61018 -18.10187 -17.77044 -17.56605 -17.20660 -16.57988 -16.31972 -15.82822 -15.56094 -15.11523 -14.76081 -14.66310 -14.31686 -13.93463 -13.81958 -13.62292 -13.15521 -12.95365 -12.89452 -12.77621 -12.59791 -12.46192 -12.29576 -12.01979 -11.87475 -11.83484 -11.74156 -11.60252 -11.56007 -10.96597 -10.92631 -10.15582 -9.00684 -7.92461 -5.22844 0.68955 1.16484 1.45797 1.50225 1.52375 1.55148 1.63213 1.82248 2.60701 3.39431 3.43644 3.57097 3.68875 3.79736 4.01467 4.12489 4.17533 4.23797 4.27278 4.30161 4.31772 4.32791 4.47334 4.53012 4.66389 4.71473 4.73030 4.88491 4.95519 5.13446 5.18823 5.25421 5.31855 5.41612 5.52441 5.76153 6.27525 6.70478 7.34092 7.57733 8.05906 8.31651 9.31801 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.063898 B = 0.002092 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.092798 B =13382.116496 C =13516.665310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.459 3.541 4 O -0.542 6.542 5 C -0.111 4.111 6 C -0.098 4.098 7 C -0.121 4.121 8 C 0.104 3.896 9 N -0.283 5.283 10 C -0.021 4.021 11 C -0.041 4.041 12 C 0.235 3.765 13 N -0.740 5.740 14 C -0.242 4.242 15 H 0.086 0.914 16 C -0.080 4.080 17 N -0.974 5.974 18 Si 0.980 3.020 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.297 1.297 22 N -0.303 5.303 23 N -0.110 5.110 24 H 0.128 0.872 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.228 0.772 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.370 0.630 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.860 -18.350 -5.468 31.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.304 3.696 4 O -0.432 6.432 5 C -0.148 4.148 6 C -0.136 4.136 7 C -0.159 4.159 8 C -0.015 4.015 9 N -0.077 5.077 10 C -0.173 4.173 11 C -0.180 4.180 12 C 0.107 3.893 13 N -0.383 5.383 14 C -0.374 4.374 15 H 0.103 0.897 16 C -0.272 4.272 17 N -0.625 5.625 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.219 1.219 21 H -0.225 1.225 22 N -0.170 5.170 23 N -0.089 5.089 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.201 0.799 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.907 -18.969 -4.328 31.606 hybrid contribution 0.239 1.546 -0.444 1.626 sum -24.668 -17.423 -4.772 30.576 Atomic orbital electron populations 1.23509 0.75093 1.05548 1.02408 1.86513 1.24827 1.33383 1.83749 1.24383 0.93269 0.80895 0.71007 1.90676 1.68279 1.37340 1.46920 1.21482 0.85408 0.99921 1.07982 1.21239 0.93216 0.94739 1.04396 1.21748 0.95976 0.93815 1.04393 1.22591 0.70534 1.00831 1.07558 1.47700 1.10298 1.32006 1.17661 1.23876 0.90271 1.02836 1.00356 1.22293 0.96672 1.02283 0.96741 1.18970 0.89221 0.86664 0.94402 1.42546 1.32553 1.24239 1.38916 1.19766 1.03279 1.02691 1.11647 0.89652 1.25664 1.02763 0.99825 0.98900 1.69871 1.43044 1.23432 1.26140 0.84971 0.78590 0.78069 0.77482 1.18470 1.21884 1.22464 1.75020 1.11566 1.15904 1.14525 1.78091 0.95375 1.19789 1.15684 0.85350 0.92162 0.92010 0.85415 0.85863 0.90908 0.90060 0.90099 0.90708 0.87560 0.84282 0.75592 0.91884 0.95417 0.79886 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.37 -4.86 10.57 -51.41 -0.54 -5.40 16 3 C 0.46 6.54 7.96 71.24 0.57 7.11 16 4 O -0.54 -11.14 15.73 21.96 0.35 -10.79 16 5 C -0.11 -0.88 5.81 29.85 0.17 -0.70 16 6 C -0.10 -0.87 4.50 30.59 0.14 -0.74 16 7 C -0.12 -1.33 5.34 30.59 0.16 -1.17 16 8 C 0.10 1.45 6.46 86.38 0.56 2.00 16 9 N -0.28 -7.25 3.44 -347.75 -1.20 -8.45 16 10 C -0.02 -0.60 11.50 83.49 0.96 0.36 16 11 C -0.04 -1.57 6.61 41.60 0.28 -1.29 16 12 C 0.24 9.94 6.82 85.63 0.58 10.52 16 13 N -0.74 -39.51 5.59 -347.18 -1.94 -41.45 16 14 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 15 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 16 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 17 N -0.97 -61.68 13.06 21.65 0.28 -61.40 16 18 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 N -0.30 -12.62 12.41 -48.60 -0.60 -13.23 16 23 N -0.11 -3.81 12.91 37.02 0.48 -3.33 16 24 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.06 0.57 8.13 -2.38 -0.02 0.55 16 26 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 27 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.04 8.07 -2.39 -0.02 1.02 16 35 H 0.23 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.37 21.67 7.66 -92.71 -0.71 20.96 16 39 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -81.33 343.14 5.11 -76.21 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.34 Total: 18.67 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.92 Total: 0.37 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -2.98 Total: -127.86 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.20 Total: -16.19 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -81.33 5.11 -76.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.206 kcal (2) G-P(sol) polarization free energy of solvation -81.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds