Wall clock time and date at job start Tue Mar 31 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.49008 * 2 1 4 4 C 1.53091 * 109.48047 * 239.97515 * 2 1 3 5 5 C 1.53176 * 109.16337 * 182.40907 * 4 2 1 6 6 H 1.09006 * 109.54520 * 297.02429 * 5 4 2 7 7 C 1.50696 * 109.54588 * 176.84698 * 5 4 2 8 8 O 1.20832 * 119.99946 * 337.91249 * 7 5 4 9 9 O 1.34228 * 120.00314 * 157.91590 * 7 5 4 10 10 C 1.45203 * 117.00012 * 184.76926 * 9 7 5 11 11 C 1.50705 * 112.84835 * 64.54898 * 10 9 7 12 12 H 1.08003 * 119.99761 * 246.28723 * 11 10 9 13 13 C 1.37874 * 120.00137 * 66.29515 * 11 10 9 14 14 N 1.31511 * 119.99841 * 183.68833 * 13 11 10 15 15 Si 1.86804 * 119.99937 * 3.68011 * 13 11 10 16 16 H 1.48502 * 109.46723 * 92.46416 * 15 13 11 17 17 H 1.48495 * 109.46929 * 212.45779 * 15 13 11 18 18 H 1.48493 * 109.47104 * 332.46484 * 15 13 11 19 19 C 1.53780 * 113.61619 * 293.35091 * 10 9 7 20 20 C 1.53954 * 87.02040 * 220.05046 * 19 10 9 21 21 C 1.53776 * 113.61449 * 195.74309 * 10 9 7 22 22 C 1.53206 * 109.04600 * 56.97876 * 5 4 2 23 23 C 1.53094 * 109.14628 * 303.02807 * 22 5 4 24 24 O 1.42901 * 109.42745 * 57.60293 * 23 22 5 25 25 H 1.08999 * 109.46869 * 299.96942 * 1 2 3 26 26 H 1.08993 * 109.47165 * 59.97250 * 1 2 3 27 27 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47808 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47401 * 300.03280 * 3 2 1 30 30 H 1.09005 * 109.46983 * 60.03131 * 3 2 1 31 31 H 1.09006 * 109.51972 * 302.30908 * 4 2 1 32 32 H 1.08993 * 109.52549 * 62.43650 * 4 2 1 33 33 H 0.97006 * 119.99917 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.61312 * 334.56729 * 19 10 9 35 35 H 1.09000 * 113.61502 * 105.46599 * 19 10 9 36 36 H 1.08997 * 113.53526 * 270.81210 * 20 19 10 37 37 H 1.09002 * 113.74246 * 139.94599 * 20 19 10 38 38 H 1.09000 * 113.61772 * 254.53343 * 21 10 9 39 39 H 1.09004 * 113.61429 * 25.34745 * 21 10 9 40 40 H 1.09001 * 109.53935 * 183.12621 * 22 5 4 41 41 H 1.08997 * 109.51854 * 62.92343 * 22 5 4 42 42 H 1.09000 * 109.47911 * 297.61272 * 23 22 5 43 43 H 1.09004 * 109.48101 * 177.59507 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9690 0.2436 -1.2424 7 6 4.0800 -1.5474 -2.3991 8 8 3.3564 -2.3356 -2.9607 9 8 5.3370 -1.3638 -2.8325 10 6 5.7259 -2.0646 -4.0433 11 6 4.9568 -1.6081 -5.2563 12 1 4.2757 -2.2854 -5.7502 13 6 5.1228 -0.3261 -5.7356 14 7 4.3988 0.0958 -6.7492 15 14 6.3759 0.8116 -4.9451 16 1 7.6705 0.6976 -5.6637 17 1 5.8896 2.2126 -5.0210 18 1 6.5639 0.4290 -3.5227 19 6 5.7720 -3.5933 -3.8824 20 6 7.0477 -3.5649 -4.7439 21 6 7.2470 -2.1181 -4.2625 22 6 4.0179 -1.4602 0.0810 23 6 3.4307 -0.7093 1.2790 24 8 2.0066 -0.6742 1.1664 25 1 -0.3633 0.5134 0.8903 26 1 -0.3633 0.5142 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1304 1.4421 -0.0005 29 1 1.6768 1.9564 -0.8896 30 1 1.6777 1.9561 0.8903 31 1 1.6443 -1.7375 -1.2709 32 1 1.7139 -0.1849 -2.1399 33 1 4.5153 0.9980 -7.0862 34 1 5.9449 -3.9194 -2.8568 35 1 4.9356 -4.1076 -4.3558 36 1 6.8527 -3.6463 -5.8132 37 1 7.8236 -4.2498 -4.4018 38 1 7.5998 -1.4431 -5.0423 39 1 7.8240 -2.0386 -3.3412 40 1 5.1061 -1.4498 0.1424 41 1 3.6616 -2.4902 0.0864 42 1 3.8193 0.3090 1.2957 43 1 3.7101 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122906609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:46 Heat of formation + Delta-G solvation = -118.418644 kcal Electronic energy + Delta-G solvation = -24095.395402 eV Core-core repulsion = 20720.300424 eV Total energy + Delta-G solvation = -3375.094978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.35443 -39.23996 -37.30302 -34.48361 -33.61124 -33.40273 -32.38327 -28.32657 -27.35123 -26.75157 -24.97295 -24.94007 -23.05219 -22.23171 -20.00819 -19.03171 -18.59719 -17.26592 -16.31110 -16.06616 -15.64895 -15.36832 -15.23508 -14.72062 -14.35150 -14.15881 -13.85105 -13.41571 -13.11452 -12.83122 -12.75015 -12.41776 -12.12816 -11.90870 -11.76859 -11.69712 -11.51781 -11.29610 -11.09857 -11.03676 -10.90347 -10.69810 -10.56863 -10.18830 -10.10993 -9.99885 -9.82427 -9.64260 -9.25308 -8.95706 -8.77886 -8.59509 -6.24654 -4.32263 3.18974 3.21820 3.35468 3.46353 3.68370 3.81669 4.33881 4.70729 4.82884 4.86598 5.00049 5.02702 5.12997 5.22995 5.37625 5.47347 5.49742 5.51585 5.58471 5.65353 5.69641 5.72815 5.75889 5.84300 5.86317 5.99163 5.99724 6.08428 6.17928 6.25993 6.28149 6.36577 6.38361 6.46944 6.62963 6.83435 6.94665 7.24064 7.27981 7.50164 7.79971 8.36941 8.83019 8.99487 9.36981 10.85547 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.006095 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.754119 B = 4592.504941 C = 5075.242750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.112 3.888 3 C -0.182 4.182 4 C -0.127 4.127 5 C -0.088 4.088 6 H 0.096 0.904 7 C 0.467 3.533 8 O -0.497 6.497 9 O -0.369 6.369 10 C 0.199 3.801 11 C -0.507 4.507 12 H 0.085 0.915 13 C 0.084 3.916 14 N -0.880 5.880 15 Si 0.864 3.136 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.235 1.235 19 C -0.143 4.143 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.144 4.144 23 C 0.062 3.938 24 O -0.375 6.375 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.267 0.733 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 0.772 14.463 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 C -0.240 4.240 4 C -0.164 4.164 5 C -0.108 4.108 6 H 0.114 0.886 7 C 0.308 3.692 8 O -0.384 6.384 9 O -0.287 6.287 10 C 0.165 3.835 11 C -0.544 4.544 12 H 0.103 0.897 13 C -0.122 4.122 14 N -0.516 5.516 15 Si 0.690 3.310 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.157 1.157 19 C -0.181 4.181 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.182 4.182 23 C -0.014 4.014 24 O -0.294 6.294 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.098 0.563 14.274 14.327 hybrid contribution 0.859 0.860 -0.173 1.228 sum -0.238 1.423 14.101 14.174 Atomic orbital electron populations 1.21733 0.92210 1.02980 1.02364 1.21506 0.94900 0.91066 0.85194 1.22489 1.02165 0.96486 1.02819 1.22087 0.93192 1.03028 0.98119 1.21105 0.96732 1.00393 0.92565 0.88610 1.22777 0.81341 0.81181 0.83922 1.90576 1.57109 1.34407 1.56265 1.86566 1.29604 1.67764 1.44720 1.21649 0.91659 0.88122 0.82062 1.20818 1.25795 0.99320 1.08436 0.89745 1.25032 0.95321 0.97720 0.94100 1.69924 1.38675 1.18168 1.24832 0.87083 0.81540 0.79610 0.82723 1.20401 1.21837 1.15750 1.23322 0.97986 0.98415 0.98361 1.22526 0.97297 0.95786 1.00618 1.23262 0.96466 0.97348 1.00045 1.22139 1.01826 1.00766 0.93446 1.22554 0.81401 0.99656 0.97815 1.87937 1.20754 1.77517 1.43214 0.91953 0.90926 0.91683 0.91780 0.91161 0.91886 0.89673 0.90145 0.92311 0.91981 0.91165 0.89577 0.92466 0.91335 0.91332 0.89995 0.90474 0.92703 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.85 37.16 0.33 -1.19 16 2 C 0.11 1.46 1.11 -90.58 -0.10 1.36 16 3 C -0.18 -2.11 7.93 37.16 0.29 -1.81 16 4 C -0.13 -2.00 3.76 -26.59 -0.10 -2.10 16 5 C -0.09 -1.49 2.41 -91.58 -0.22 -1.71 16 6 H 0.10 1.54 6.62 -51.93 -0.34 1.20 16 7 C 0.47 10.24 6.65 36.00 0.24 10.48 16 8 O -0.50 -12.31 14.46 -18.75 -0.27 -12.59 16 9 O -0.37 -8.60 8.10 -39.25 -0.32 -8.92 16 10 C 0.20 4.78 0.24 -90.96 -0.02 4.76 16 11 C -0.51 -14.33 7.85 -34.44 -0.27 -14.60 16 12 H 0.08 2.67 8.05 -52.48 -0.42 2.24 16 13 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 14 N -0.88 -26.52 13.96 55.43 0.77 -25.75 16 15 Si 0.86 21.19 24.54 -169.99 -4.17 17.01 16 16 H -0.28 -6.60 7.08 56.52 0.40 -6.20 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.23 -5.52 5.67 56.52 0.32 -5.20 16 19 C -0.14 -3.06 6.43 -25.83 -0.17 -3.22 16 20 C -0.12 -2.40 7.81 -25.83 -0.20 -2.60 16 21 C -0.13 -2.83 6.10 -25.92 -0.16 -2.98 16 22 C -0.14 -1.98 5.41 -26.58 -0.14 -2.12 16 23 C 0.06 0.73 6.51 37.21 0.24 0.97 16 24 O -0.37 -5.04 10.24 -35.23 -0.36 -5.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.75 4.98 -51.93 -0.26 0.49 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.44 7.78 -51.93 -0.40 1.04 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.59 8.09 -51.93 -0.42 1.17 16 36 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.51 5.64 -51.93 -0.29 1.22 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -31.99 329.35 -6.95 -38.93 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.19 Total: 4.22 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.37 Total: -12.48 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.95 Total: -26.90 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.99 -6.95 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122906609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.486 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds