Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.48550 * 2 1 4 4 C 1.53094 * 109.47731 * 120.02700 * 2 1 3 5 5 C 1.53186 * 109.15861 * 177.59581 * 4 2 1 6 6 H 1.08998 * 109.54411 * 62.98011 * 5 4 2 7 7 C 1.50703 * 109.53828 * 183.15282 * 5 4 2 8 8 O 1.20826 * 120.00328 * 359.97438 * 7 5 4 9 9 O 1.34231 * 119.99686 * 180.02562 * 7 5 4 10 10 C 1.45199 * 116.99924 * 184.57316 * 9 7 5 11 11 C 1.50699 * 112.85219 * 294.74207 * 10 9 7 12 12 H 1.07992 * 119.99925 * 119.79473 * 11 10 9 13 13 C 1.37878 * 119.99708 * 299.79838 * 11 10 9 14 14 N 1.31512 * 120.00179 * 353.42180 * 13 11 10 15 15 Si 1.86800 * 119.99570 * 173.69727 * 13 11 10 16 16 H 1.48493 * 109.47217 * 60.00060 * 15 13 11 17 17 H 1.48501 * 109.47089 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47310 * 299.99598 * 15 13 11 19 19 C 1.53784 * 113.61467 * 65.94017 * 10 9 7 20 20 C 1.53955 * 87.02151 * 89.22560 * 19 10 9 21 21 C 1.53783 * 113.61547 * 163.54455 * 10 9 7 22 22 C 1.53175 * 109.03476 * 303.01696 * 5 4 2 23 23 C 1.53090 * 109.16375 * 56.98319 * 22 5 4 24 24 O 1.42901 * 109.41654 * 302.38948 * 23 22 5 25 25 H 1.08993 * 109.47450 * 299.97117 * 1 2 3 26 26 H 1.09000 * 109.47184 * 59.97586 * 1 2 3 27 27 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46736 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47189 * 300.02641 * 3 2 1 30 30 H 1.09007 * 109.47269 * 60.02923 * 3 2 1 31 31 H 1.09001 * 109.52343 * 57.69121 * 4 2 1 32 32 H 1.09003 * 109.57748 * 297.52901 * 4 2 1 33 33 H 0.96995 * 119.99716 * 185.04667 * 14 13 11 34 34 H 1.09002 * 113.61403 * 203.74978 * 19 10 9 35 35 H 1.09004 * 113.61284 * 334.64917 * 19 10 9 36 36 H 1.08998 * 113.54133 * 270.81337 * 20 19 10 37 37 H 1.09005 * 113.73926 * 139.94215 * 20 19 10 38 38 H 1.09005 * 113.61225 * 25.35069 * 21 10 9 39 39 H 1.08996 * 113.61764 * 156.25187 * 21 10 9 40 40 H 1.09003 * 109.51698 * 176.88712 * 22 5 4 41 41 H 1.09000 * 109.52294 * 297.07559 * 22 5 4 42 42 H 1.09001 * 109.48214 * 182.40654 * 23 22 5 43 43 H 1.09001 * 109.47770 * 62.36851 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9689 0.2436 1.2426 7 6 4.0799 -1.5475 2.3992 8 8 3.2999 -2.0147 3.1949 9 8 5.3998 -1.7194 2.5731 10 6 5.8146 -2.5629 3.6797 11 6 5.4566 -1.9831 5.0238 12 1 4.8043 -2.5276 5.6903 13 6 5.9619 -0.7574 5.4025 14 7 6.8562 -0.1540 4.6503 15 14 5.3820 0.0424 6.9878 16 1 5.6982 -0.8460 8.1349 17 1 6.0722 1.3451 7.1664 18 1 3.9151 0.2638 6.9228 19 6 5.4080 -4.0371 3.5166 20 6 6.7493 -4.2432 2.7897 21 6 7.2751 -3.0342 3.5813 22 6 4.0177 -1.4600 -0.0808 23 6 3.4308 -0.7093 -1.2789 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3634 0.5133 0.8902 26 1 -0.3633 0.5142 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6768 1.9564 -0.8897 30 1 1.6776 1.9562 0.8903 31 1 1.6443 -1.7375 1.2710 32 1 1.7148 -0.1853 2.1405 33 1 7.2657 0.6720 4.9519 34 1 5.3354 -4.5770 4.4608 35 1 4.5370 -4.1816 2.8773 36 1 6.6931 -4.0705 1.7149 37 1 7.2460 -5.1800 3.0424 38 1 7.9095 -2.3702 2.9940 39 1 7.7141 -3.2994 4.5431 40 1 5.1059 -1.4496 -0.1419 41 1 3.6614 -2.4901 -0.0862 42 1 3.7101 -1.2203 -2.2004 43 1 3.8193 0.3090 -1.2956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122906611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = -122.205620 kcal Electronic energy + Delta-G solvation = -24067.153604 eV Core-core repulsion = 20691.894410 eV Total energy + Delta-G solvation = -3375.259194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26515 -39.06540 -36.98591 -34.11446 -33.54003 -33.32468 -32.33403 -28.24023 -27.32500 -26.55462 -24.89991 -24.52457 -22.77318 -22.21135 -20.11045 -19.01643 -18.12585 -17.15974 -16.24594 -16.01009 -15.49003 -15.12730 -14.73465 -14.63408 -14.37946 -14.08519 -13.73803 -13.52605 -13.09978 -12.81911 -12.40623 -12.18816 -12.06147 -11.84271 -11.63875 -11.56231 -11.27359 -11.14300 -11.09255 -10.96986 -10.87119 -10.53895 -10.48968 -10.15416 -10.04482 -9.97551 -9.90621 -9.54610 -9.09418 -8.87575 -8.51130 -8.29751 -6.07848 -4.17331 3.28164 3.32335 3.37942 3.43922 3.76037 3.90767 4.37821 4.75201 4.86578 4.95872 5.06770 5.09150 5.25529 5.29342 5.46127 5.53947 5.57469 5.67102 5.69366 5.74642 5.75817 5.81128 5.86015 5.89854 6.02325 6.04972 6.13823 6.19905 6.30410 6.32035 6.43150 6.49003 6.50297 6.78807 6.83102 7.18981 7.26938 7.32925 7.54596 7.78774 7.93698 8.33732 8.82579 9.19842 9.51405 10.96447 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.006079 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.556879 B = 4604.787142 C = 5435.643586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.112 3.888 3 C -0.182 4.182 4 C -0.123 4.123 5 C -0.087 4.087 6 H 0.100 0.900 7 C 0.464 3.536 8 O -0.507 6.507 9 O -0.334 6.334 10 C 0.235 3.765 11 C -0.520 4.520 12 H 0.064 0.936 13 C 0.076 3.924 14 N -0.866 5.866 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.094 4.094 22 C -0.144 4.144 23 C 0.061 3.939 24 O -0.376 6.376 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 0.726 -10.836 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.073 3.927 3 C -0.239 4.239 4 C -0.161 4.161 5 C -0.106 4.106 6 H 0.118 0.882 7 C 0.306 3.694 8 O -0.396 6.396 9 O -0.250 6.250 10 C 0.201 3.799 11 C -0.558 4.558 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.503 5.503 15 Si 0.716 3.284 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.191 4.191 20 C -0.191 4.191 21 C -0.132 4.132 22 C -0.182 4.182 23 C -0.015 4.015 24 O -0.296 6.296 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.079 0.684 -10.745 12.364 hybrid contribution -0.020 0.654 1.276 1.434 sum -6.099 1.337 -9.469 11.342 Atomic orbital electron populations 1.21729 0.92371 1.02875 1.02273 1.21504 0.94765 0.91136 0.85330 1.22481 1.02307 0.96437 1.02663 1.22043 0.93524 1.02577 0.97926 1.21082 0.96244 1.00538 0.92771 0.88218 1.22799 0.82448 0.78686 0.85460 1.90562 1.57702 1.47349 1.43951 1.86398 1.23034 1.64056 1.51465 1.20524 0.91683 0.83962 0.83738 1.21156 1.30520 1.04126 0.99981 0.91812 1.25045 0.94485 0.96618 0.96785 1.70001 1.25546 1.18141 1.36612 0.86709 0.79384 0.78649 0.83676 1.19988 1.21184 1.20027 1.23483 0.95735 1.00034 0.99803 1.23042 0.98365 0.98710 0.98958 1.22733 0.97106 0.94272 0.99083 1.22131 1.02307 1.00342 0.93373 1.22583 0.81170 0.99748 0.98022 1.87927 1.20979 1.77498 1.43158 0.91054 0.91976 0.91768 0.91646 0.91939 0.91319 0.90283 0.90195 0.92813 0.90201 0.93147 0.91461 0.92932 0.91905 0.89951 0.89487 0.90869 0.88745 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.85 37.16 0.33 -1.17 16 2 C 0.11 1.46 1.11 -90.57 -0.10 1.36 16 3 C -0.18 -2.12 7.93 37.16 0.29 -1.83 16 4 C -0.12 -1.94 3.52 -26.59 -0.09 -2.03 16 5 C -0.09 -1.52 2.41 -91.58 -0.22 -1.74 16 6 H 0.10 1.70 6.62 -51.93 -0.34 1.36 16 7 C 0.46 10.62 6.62 36.01 0.24 10.86 16 8 O -0.51 -12.91 14.11 -18.75 -0.26 -13.17 16 9 O -0.33 -8.29 9.81 -39.26 -0.39 -8.67 16 10 C 0.24 5.94 0.33 -90.96 -0.03 5.91 16 11 C -0.52 -14.57 7.31 -34.44 -0.25 -14.82 16 12 H 0.06 1.83 7.82 -52.49 -0.41 1.42 16 13 C 0.08 2.11 5.40 -17.82 -0.10 2.01 16 14 N -0.87 -24.44 12.79 55.43 0.71 -23.73 16 15 Si 0.89 21.63 29.55 -169.99 -5.02 16.60 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 19 C -0.15 -3.40 6.91 -25.83 -0.18 -3.58 16 20 C -0.15 -3.00 8.03 -25.82 -0.21 -3.21 16 21 C -0.09 -2.16 7.05 -25.92 -0.18 -2.34 16 22 C -0.14 -2.11 5.36 -26.59 -0.14 -2.25 16 23 C 0.06 0.75 6.52 37.20 0.24 1.00 16 24 O -0.38 -5.18 10.24 -35.23 -0.36 -5.54 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.79 4.98 -51.93 -0.26 0.53 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.33 8.02 -51.93 -0.42 0.91 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 34 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 35 H 0.05 1.12 7.35 -51.93 -0.38 0.74 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.62 6.34 -51.93 -0.33 0.30 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -30.96 338.51 -7.81 -38.77 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.19 Total: 2.48 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.40 Total: -11.84 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.71 Total: -23.73 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.01 Total: -27.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.96 -7.81 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122906611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.434 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds