Wall clock time and date at job start Tue Mar 31 2020 07:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 C 1.52999 * 109.47159 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47083 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00044 * 270.00658 * 5 4 3 7 7 H 1.07997 * 120.00146 * 37.48427 * 6 5 4 8 8 C 1.38811 * 119.99657 * 217.48405 * 6 5 4 9 9 N 1.31618 * 120.00231 * 23.39222 * 8 6 5 10 10 Si 1.86796 * 119.99996 * 203.38974 * 8 6 5 11 11 H 1.48507 * 109.47250 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47298 * 120.00034 * 10 8 6 13 13 H 1.48504 * 109.47327 * 240.00252 * 10 8 6 14 14 C 1.46496 * 120.00044 * 90.00126 * 5 4 3 15 15 C 1.50699 * 109.47437 * 267.17628 * 14 5 4 16 16 C 1.33226 * 125.12719 * 89.99571 * 15 14 5 17 17 C 1.38589 * 114.98460 * 180.02562 * 16 15 14 18 18 C 1.34101 * 114.71512 * 0.02562 * 17 16 15 19 19 N 1.39616 * 125.23452 * 180.02562 * 18 17 16 20 20 C 1.46505 * 120.00188 * 359.97438 * 19 18 17 21 21 C 1.46497 * 120.00078 * 179.97438 * 19 18 17 22 22 S 1.75860 * 125.12560 * 270.02577 * 15 14 5 23 23 H 1.08994 * 109.47327 * 299.99822 * 1 2 3 24 24 H 1.08997 * 109.47064 * 60.00195 * 1 2 3 25 25 H 1.09007 * 109.46961 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47327 * 240.00178 * 2 1 3 27 27 H 1.08997 * 109.47064 * 119.99805 * 2 1 3 28 28 H 1.09007 * 109.46638 * 59.99944 * 3 2 1 29 29 H 1.09004 * 109.47142 * 300.00503 * 3 2 1 30 30 H 1.09002 * 109.46670 * 60.00452 * 4 3 2 31 31 H 1.08997 * 109.47310 * 300.00018 * 4 3 2 32 32 H 0.96995 * 120.00268 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47534 * 147.17106 * 14 5 4 34 34 H 1.09008 * 109.47011 * 27.17557 * 14 5 4 35 35 H 1.07994 * 122.51106 * 0.05039 * 16 15 14 36 36 H 1.08001 * 122.64213 * 180.26848 * 17 16 15 37 37 H 1.09006 * 109.46464 * 90.00299 * 20 19 18 38 38 H 1.08987 * 109.47371 * 210.00113 * 20 19 18 39 39 H 1.09001 * 109.46803 * 330.00955 * 20 19 18 40 40 H 1.09005 * 109.47125 * 0.02562 * 21 19 18 41 41 H 1.08999 * 109.47526 * 119.99577 * 21 19 18 42 42 H 1.08994 * 109.47520 * 239.99500 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2868 3.4698 -1.1844 7 1 3.6263 3.3083 -2.0234 8 6 5.3676 4.3320 -1.3078 9 7 6.4078 4.2017 -0.5118 10 14 5.3460 5.6773 -2.6035 11 1 4.0718 5.6122 -3.3635 12 1 5.4607 7.0025 -1.9432 13 1 6.4879 5.4873 -3.5336 14 6 4.3019 3.5140 1.2703 15 6 3.0678 4.2809 1.6701 16 6 2.0750 3.8001 2.4172 17 6 1.0392 4.6892 2.6569 18 6 1.1972 5.8979 2.0980 19 7 0.2923 6.9563 2.1986 20 6 -0.9466 6.7908 2.9629 21 6 0.5816 8.2325 1.5400 22 16 2.7206 5.9452 1.2203 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9563 0.8901 29 1 1.6765 1.9564 -0.8900 30 1 3.9336 0.9286 -0.8892 31 1 3.9329 0.9289 0.8908 32 1 7.1631 4.8040 -0.5983 33 1 5.1370 4.2047 1.1538 34 1 4.5408 2.7821 2.0419 35 1 2.0773 2.7930 2.8071 36 1 0.1749 4.4303 3.2505 37 1 -0.7747 7.0788 4.0001 38 1 -1.7248 7.4223 2.5347 39 1 -1.2616 5.7481 2.9228 40 1 1.5395 8.1661 1.0239 41 1 -0.2045 8.4555 0.8186 42 1 0.6250 9.0252 2.2867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138492830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:25 Heat of formation + Delta-G solvation = 47.871449 kcal Electronic energy + Delta-G solvation = -20606.300172 eV Core-core repulsion = 17713.461695 eV Total energy + Delta-G solvation = -2892.838477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -37.93953 -36.60743 -35.11581 -33.92306 -31.29221 -29.48927 -28.23178 -27.68413 -25.89989 -24.14831 -22.98897 -21.63257 -20.83440 -20.09150 -18.36322 -17.10289 -16.33392 -15.30409 -14.96115 -14.83311 -14.80316 -14.21609 -13.71079 -13.58419 -13.43183 -13.10893 -12.55101 -12.35849 -12.31440 -12.13044 -12.12025 -11.83966 -11.69508 -11.28783 -11.13967 -10.94989 -10.63936 -10.52498 -10.46061 -10.32990 -10.04249 -9.99293 -9.73972 -9.64731 -9.05123 -8.45907 -7.64715 -6.64708 -6.56131 -5.80039 -3.34089 2.04593 2.15312 2.91803 3.35481 3.44832 3.46983 3.48740 3.62015 4.50049 5.10420 5.26078 5.28714 5.33957 5.38904 5.44827 5.60134 5.64745 5.68743 5.71937 5.79098 5.99254 6.05638 6.11129 6.20471 6.30481 6.41416 6.44852 6.45695 6.58320 6.70290 6.74090 6.79333 7.06910 7.10022 7.19537 7.29723 7.40172 7.61039 7.69560 7.84812 8.52040 9.18260 9.81116 10.40166 11.19571 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.008074 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.106480 B = 3467.081247 C = 5267.143695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.572 5.572 6 C -0.250 4.250 7 H 0.059 0.941 8 C 0.016 3.984 9 N -0.883 5.883 10 Si 0.883 3.117 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.289 1.289 14 C 0.205 3.795 15 C -0.164 4.164 16 C -0.132 4.132 17 C -0.234 4.234 18 C 0.077 3.923 19 N -0.621 5.621 20 C 0.109 3.891 21 C 0.100 3.900 22 S 0.092 5.908 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.255 0.745 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 1.954 6.122 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.023 3.977 5 N -0.291 5.291 6 C -0.381 4.381 7 H 0.076 0.924 8 C -0.185 4.185 9 N -0.525 5.525 10 Si 0.712 3.288 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.216 1.216 14 C 0.077 3.923 15 C -0.285 4.285 16 C -0.162 4.162 17 C -0.268 4.268 18 C -0.138 4.138 19 N -0.339 5.339 20 C -0.036 4.036 21 C -0.043 4.043 22 S 0.350 5.650 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.706 3.214 5.271 12.358 hybrid contribution -1.000 -0.219 0.137 1.033 sum -11.706 2.995 5.408 13.238 Atomic orbital electron populations 1.21751 0.96877 1.00398 1.01511 1.21497 0.94935 0.98532 1.01054 1.22290 0.99462 0.94319 1.02128 1.20908 0.91195 0.86764 0.98793 1.43758 1.75459 1.08098 1.01735 1.18999 1.05866 1.22277 0.90924 0.92350 1.25088 0.94193 1.01240 0.97929 1.70028 1.04743 1.37087 1.40599 0.86523 0.77808 0.82793 0.81690 1.19841 1.21101 1.21598 1.19546 0.91549 0.94599 0.86616 1.25682 1.04728 0.95146 1.02912 1.19498 0.93912 0.99770 1.03031 1.19499 1.02997 0.93247 1.11105 1.22265 0.96557 0.91859 1.03151 1.45455 1.20048 1.10415 1.57952 1.21455 0.85306 1.02050 0.94827 1.21577 1.01380 0.84826 0.96556 1.84372 1.12351 1.14701 1.53600 0.93126 0.93147 0.93696 0.92695 0.92790 0.91930 0.92767 0.93497 0.95026 0.93525 0.88405 0.93592 0.85876 0.86360 0.94015 0.92108 0.91672 0.91069 0.92992 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.64 5.54 -26.73 -0.15 -2.79 16 4 C 0.15 3.15 5.71 -4.04 -0.02 3.13 16 5 N -0.57 -13.98 2.41 -174.61 -0.42 -14.40 16 6 C -0.25 -6.74 9.43 -15.06 -0.14 -6.88 16 7 H 0.06 1.61 7.93 -52.49 -0.42 1.20 16 8 C 0.02 0.44 4.93 -17.43 -0.09 0.35 16 9 N -0.88 -24.93 11.56 55.49 0.64 -24.29 16 10 Si 0.88 21.51 29.61 -169.99 -5.03 16.47 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.21 4.80 5.85 -5.20 -0.03 4.77 16 15 C -0.16 -3.47 6.03 -36.06 -0.22 -3.69 16 16 C -0.13 -2.50 8.29 -41.20 -0.34 -2.85 16 17 C -0.23 -4.15 9.43 -40.91 -0.39 -4.53 16 18 C 0.08 1.37 7.03 -15.46 -0.11 1.26 16 19 N -0.62 -9.18 3.41 -188.73 -0.64 -9.82 16 20 C 0.11 1.23 10.42 59.85 0.62 1.85 16 21 C 0.10 1.26 10.74 59.85 0.64 1.90 16 22 S 0.09 1.87 21.62 -107.50 -2.32 -0.46 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.19 5.71 -51.92 -0.30 0.89 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 31 H 0.03 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.10 2.58 5.58 -51.93 -0.29 2.29 16 34 H 0.05 1.02 7.86 -51.92 -0.41 0.61 16 35 H 0.12 2.18 7.64 -52.49 -0.40 1.78 16 36 H 0.12 1.84 6.84 -52.49 -0.36 1.48 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.55 8.07 -51.94 -0.42 0.13 16 39 H 0.06 0.74 6.67 -51.93 -0.35 0.39 16 40 H 0.07 0.99 6.41 -51.93 -0.33 0.66 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -28.93 349.38 -9.56 -38.49 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.04 Total: -0.19 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.01 Total: -11.07 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.42 Total: -48.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.32 Total: -0.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.93 -9.56 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138492830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.363 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds