Wall clock time and date at job start Tue Mar 31 2020 07:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47214 * 2 1 4 4 C 1.52996 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00122 * 269.47372 * 5 4 3 7 7 H 1.07991 * 119.99951 * 326.03020 * 6 5 4 8 8 C 1.38810 * 119.99777 * 146.02452 * 6 5 4 9 9 N 1.31621 * 120.00191 * 336.66427 * 8 6 5 10 10 Si 1.86800 * 119.99952 * 156.66807 * 8 6 5 11 11 H 1.48497 * 109.47077 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47151 * 119.99712 * 10 8 6 13 13 H 1.48500 * 109.47315 * 239.99959 * 10 8 6 14 14 C 1.46498 * 119.99896 * 89.47692 * 5 4 3 15 15 C 1.50701 * 109.47431 * 90.00159 * 14 5 4 16 16 C 1.33632 * 122.75085 * 94.70722 * 15 14 5 17 17 S 1.76196 * 107.92437 * 179.97438 * 16 15 14 18 18 C 1.70971 * 90.28264 * 0.27467 * 17 16 15 19 19 C 1.50701 * 124.91601 * 179.84161 * 18 17 16 20 20 C 1.53001 * 109.47335 * 299.99566 * 19 18 17 21 21 C 1.53003 * 109.47384 * 59.99948 * 19 18 17 22 22 N 1.29028 * 110.16941 * 359.83785 * 18 17 16 23 23 H 1.08993 * 109.47281 * 60.00113 * 1 2 3 24 24 H 1.09005 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47233 * 299.99444 * 1 2 3 26 26 H 1.08999 * 109.47016 * 239.99807 * 2 1 3 27 27 H 1.09009 * 109.47275 * 120.00315 * 2 1 3 28 28 H 1.09000 * 109.46567 * 60.00148 * 3 2 1 29 29 H 1.08993 * 109.46904 * 300.00118 * 3 2 1 30 30 H 1.09001 * 109.47561 * 300.00479 * 4 3 2 31 31 H 1.09006 * 109.47016 * 60.00170 * 4 3 2 32 32 H 0.97002 * 120.00155 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46919 * 210.00191 * 14 5 4 34 34 H 1.09001 * 109.47138 * 330.00091 * 14 5 4 35 35 H 1.08001 * 126.03709 * 0.03582 * 16 15 14 36 36 H 1.09003 * 109.47251 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47160 * 300.00471 * 20 19 18 38 38 H 1.09003 * 109.46745 * 59.99942 * 20 19 18 39 39 H 1.08996 * 109.47172 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47169 * 60.00072 * 21 19 18 41 41 H 1.09001 * 109.47019 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.46602 * 299.99816 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2963 3.4653 -1.1874 7 1 4.6621 2.9095 -2.0380 8 6 4.0673 4.8300 -1.2964 9 7 3.2241 5.4232 -0.4782 10 14 4.9556 5.8246 -2.6045 11 1 5.8417 4.9290 -3.3906 12 1 3.9601 6.4535 -3.5093 13 1 5.7708 6.8817 -1.9541 14 6 4.2921 3.5185 1.2671 15 6 5.7117 3.2832 1.7146 16 6 6.7056 4.1345 1.4439 17 16 8.1845 3.4822 2.1451 18 6 7.3210 2.1256 2.7255 19 6 7.9263 0.9868 3.5052 20 6 9.0121 0.3129 2.6638 21 6 8.5431 1.5247 4.7979 22 7 6.0760 2.2179 2.3996 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9562 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9285 0.8890 31 1 3.9329 0.9288 -0.8909 32 1 3.0638 6.3769 -0.5546 33 1 4.1261 4.5873 1.1318 34 1 3.6051 3.1369 2.0224 35 1 6.6176 5.0596 0.8935 36 1 7.1510 0.2600 3.7480 37 1 8.5726 -0.0703 1.7429 38 1 9.7873 1.0399 2.4214 39 1 9.4495 -0.5110 3.2275 40 1 7.7696 2.0047 5.3973 41 1 8.9805 0.7009 5.3620 42 1 9.3183 2.2516 4.5555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138887719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:29 Heat of formation + Delta-G solvation = 34.667087 kcal Electronic energy + Delta-G solvation = -20388.351645 eV Core-core repulsion = 17494.940584 eV Total energy + Delta-G solvation = -2893.411061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.24069 -36.31223 -35.28387 -33.87894 -31.28244 -29.80105 -27.74250 -27.21196 -26.14881 -24.32216 -23.69885 -21.26431 -20.51870 -19.94871 -19.00911 -17.24162 -16.25376 -15.29537 -14.79061 -14.73766 -14.37918 -14.23033 -13.70968 -13.49206 -13.44358 -13.08342 -12.64709 -12.48879 -12.20973 -12.06784 -11.83533 -11.56330 -11.49543 -11.23727 -11.14605 -10.93305 -10.85063 -10.55671 -10.49732 -10.41103 -10.22683 -10.04325 -9.86740 -9.60211 -9.02469 -8.74512 -8.53997 -7.99185 -6.68084 -5.86347 -3.35675 1.40463 2.00815 2.40447 3.30028 3.40507 3.43846 3.58663 4.41029 4.46333 4.92495 5.11552 5.23660 5.33364 5.41721 5.51292 5.54680 5.70918 5.74787 5.76779 5.80435 5.84521 6.00922 6.10989 6.12893 6.19292 6.21403 6.26141 6.31583 6.43800 6.49652 6.52848 6.73131 6.76025 6.90128 7.05015 7.13811 7.33617 7.54916 7.78379 8.42200 8.54911 9.11903 9.76097 10.33812 11.15033 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.006490 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.398751 B = 4313.362711 C = 6130.275396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.571 5.571 6 C -0.249 4.249 7 H 0.062 0.938 8 C 0.010 3.990 9 N -0.884 5.884 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.287 1.287 14 C 0.208 3.792 15 C 0.071 3.929 16 C -0.236 4.236 17 S 0.047 5.953 18 C 0.043 3.957 19 C -0.016 4.016 20 C -0.145 4.145 21 C -0.144 4.144 22 N -0.460 5.460 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.255 0.745 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -7.378 7.471 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.289 5.289 6 C -0.379 4.379 7 H 0.079 0.921 8 C -0.190 4.190 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.214 1.214 14 C 0.078 3.922 15 C -0.062 4.062 16 C -0.375 4.375 17 S 0.300 5.700 18 C -0.236 4.236 19 C -0.038 4.038 20 C -0.203 4.203 21 C -0.202 4.202 22 N -0.174 5.174 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.186 0.814 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.651 -7.297 7.636 13.043 hybrid contribution -0.397 0.863 -1.118 1.468 sum 7.254 -6.434 6.518 11.683 Atomic orbital electron populations 1.21755 0.96807 1.00354 1.01648 1.21519 0.95045 0.98623 1.00883 1.22129 0.99003 0.93989 1.02050 1.20935 0.91363 0.86862 0.98546 1.43778 1.73089 1.10353 1.01645 1.19129 1.37033 0.91371 0.90395 0.92064 1.25041 0.97332 0.98487 0.98160 1.69972 1.32524 1.10327 1.39853 0.86417 0.79775 0.80259 0.81618 1.20089 1.21545 1.21359 1.19765 0.84026 1.02095 0.86302 1.22000 1.01714 0.87971 0.94497 1.26810 0.92923 1.07173 1.10609 1.83455 1.16091 1.18813 1.51672 1.26873 0.92606 1.00118 1.03997 1.19697 0.97640 0.92903 0.93566 1.21892 0.97824 1.00457 1.00115 1.21894 1.00867 1.01264 0.96222 1.66223 1.14507 1.23258 1.13432 0.92974 0.93752 0.93096 0.92805 0.92894 0.92985 0.91948 0.94111 0.94342 0.93449 0.86759 0.94031 0.81376 0.88657 0.92077 0.92341 0.91749 0.92174 0.91742 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.75 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.65 5.54 -26.73 -0.15 -2.80 16 4 C 0.15 3.27 5.67 -4.04 -0.02 3.24 16 5 N -0.57 -14.20 2.43 -174.61 -0.43 -14.62 16 6 C -0.25 -6.70 9.48 -15.06 -0.14 -6.84 16 7 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 8 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 9 N -0.88 -24.47 11.34 55.49 0.63 -23.84 16 10 Si 0.89 21.12 29.61 -169.99 -5.03 16.09 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.21 4.99 5.73 -5.19 -0.03 4.96 16 15 C 0.07 1.55 6.32 -84.23 -0.53 1.02 16 16 C -0.24 -4.84 11.12 29.12 0.32 -4.52 16 17 S 0.05 0.78 22.53 -107.50 -2.42 -1.64 16 18 C 0.04 0.74 6.03 -13.46 -0.08 0.66 16 19 C -0.02 -0.20 3.35 -91.77 -0.31 -0.51 16 20 C -0.14 -1.61 9.09 37.16 0.34 -1.27 16 21 C -0.14 -1.52 9.09 37.16 0.34 -1.18 16 22 N -0.46 -9.39 10.53 -8.06 -0.08 -9.47 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.12 3.00 5.29 -51.93 -0.27 2.73 16 34 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.17 3.50 8.06 -52.49 -0.42 3.08 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.64 7.93 -51.93 -0.41 0.22 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.60 7.93 -51.93 -0.41 0.19 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -28.32 357.31 -9.50 -37.81 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.40 Total: 1.22 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.14 Total: -10.94 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.12 Total: -47.93 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.42 Total: -1.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -9.50 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138887719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.482 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds