Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38319 * 119.87995 * 269.73087 * 13 12 2 15 15 C 1.38017 * 120.11995 * 179.72733 * 14 13 12 16 16 C 1.39343 * 119.87553 * 0.56510 * 15 14 13 17 17 C 1.48399 * 120.11843 * 179.68317 * 16 15 14 18 18 C 1.39761 * 120.53517 * 0.02562 * 17 16 15 19 19 C 1.38415 * 118.30833 * 179.97438 * 18 17 16 20 20 C 1.38316 * 119.28672 * 0.02562 * 19 18 17 21 21 N 1.31891 * 121.02445 * 0.02562 * 20 19 18 22 22 C 1.31745 * 121.85201 * 359.65424 * 21 20 19 23 23 C 1.39332 * 119.75945 * 359.71012 * 16 15 14 24 24 C 1.38013 * 119.87665 * 359.97438 * 23 16 15 25 25 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 26 26 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 27 27 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 28 28 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 29 29 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 30 30 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 32 32 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 33 33 H 1.07997 * 119.94008 * 359.97438 * 14 13 12 34 34 H 1.08002 * 120.06828 * 180.27456 * 15 14 13 35 35 H 1.07994 * 120.84713 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.35752 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.48595 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.70351 * 180.33521 * 22 21 20 39 39 H 1.07999 * 120.06125 * 180.02562 * 23 16 15 40 40 H 1.08004 * 119.93958 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5736 3.1378 11 1 0.1045 4.2237 3.2849 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4990 -3.0711 -0.3046 15 6 2.1731 -4.4028 -0.1459 16 6 0.9786 -4.8923 -0.6706 17 6 0.6261 -6.3248 -0.5092 18 6 1.4842 -7.1953 0.1684 19 6 1.1096 -8.5219 0.2925 20 6 -0.0906 -8.9400 -0.2535 21 7 -0.8794 -8.0950 -0.8886 22 6 -0.5678 -6.8224 -1.0262 23 6 0.1167 -4.0321 -1.3477 24 6 0.4496 -2.7009 -1.4949 25 1 -0.3632 -1.0253 0.0709 26 1 -0.3634 0.5739 0.8525 27 1 -0.3633 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 2.9863 4.9181 0.7769 31 1 1.5612 -0.3872 -2.0627 32 1 3.0798 -0.6611 -1.1756 33 1 3.4269 -2.6917 0.0972 34 1 2.8447 -5.0653 0.3799 35 1 2.4159 -6.8418 0.5847 36 1 1.7475 -9.2232 0.8100 37 1 -0.3863 -9.9743 -0.1582 38 1 -1.2422 -6.1598 -1.5483 39 1 -0.8105 -4.4063 -1.7560 40 1 -0.2179 -2.0331 -2.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139639778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = 62.053466 kcal Electronic energy + Delta-G solvation = -20415.550876 eV Core-core repulsion = 17387.883426 eV Total energy + Delta-G solvation = -3027.667450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53418 -39.08519 -36.46526 -33.62279 -32.57427 -32.20934 -30.86419 -29.87937 -27.15983 -26.59255 -24.38811 -24.23468 -22.85444 -21.87579 -20.95955 -20.12572 -17.78982 -16.52077 -16.42848 -16.40852 -15.36140 -14.93565 -14.85667 -14.43923 -14.28711 -14.15250 -13.86103 -13.61654 -13.53987 -12.98139 -12.77592 -12.54447 -12.00529 -11.91245 -11.55888 -11.19131 -11.15435 -10.94667 -10.75819 -10.66616 -10.45333 -10.24395 -9.88197 -9.68379 -9.67260 -9.25468 -8.84865 -8.45809 -8.08832 -7.27820 -6.04638 -4.06056 0.43095 1.00216 1.49937 1.79526 3.32516 3.36448 3.39555 3.52478 3.98897 4.14066 4.41959 4.48099 4.52039 4.65624 4.76781 4.94524 4.98826 5.06529 5.19801 5.26958 5.32244 5.42540 5.54753 5.56842 5.76853 5.83413 5.93346 5.96314 6.12209 6.15406 6.22101 6.31985 6.37042 6.53146 6.56355 6.73482 6.83413 7.04028 7.24553 7.30347 7.72064 7.76935 8.04431 8.16030 8.50960 9.01252 9.58090 11.06198 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034343 B = 0.002826 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.110253 B = 9906.282217 C =10043.042286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.085 3.915 13 C -0.049 4.049 14 C -0.098 4.098 15 C -0.107 4.107 16 C -0.064 4.064 17 C -0.080 4.080 18 C -0.074 4.074 19 C -0.168 4.168 20 C 0.087 3.913 21 N -0.482 5.482 22 C 0.102 3.898 23 C -0.107 4.107 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.030 0.970 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -22.166 -3.806 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.043 4.043 13 C -0.050 4.050 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.065 4.065 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.188 4.188 20 C -0.070 4.070 21 N -0.190 5.190 22 C -0.055 4.055 23 C -0.125 4.125 24 C -0.131 4.131 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.194 -22.504 -3.762 23.039 hybrid contribution 0.378 1.298 0.515 1.447 sum -2.816 -21.206 -3.247 21.637 Atomic orbital electron populations 1.22292 0.88853 0.99807 1.00478 1.62163 1.07128 1.17663 1.38860 1.19757 0.95401 0.81321 0.96738 1.21115 1.34932 0.96901 1.01682 0.91893 1.24990 0.95289 0.97320 0.97013 1.69944 1.38308 1.11521 1.34104 0.86549 0.78716 0.78323 0.83759 1.20145 1.21345 1.20273 1.21107 1.00617 0.89131 0.93426 1.20119 0.93729 0.95955 0.95166 1.21009 1.00114 0.92566 0.97922 1.21133 0.95961 0.95759 0.99608 1.18497 0.95873 0.90996 1.01135 1.19862 0.95816 0.93703 0.98803 1.21711 0.99281 0.93010 0.95961 1.22096 0.98512 0.96545 1.01614 1.22783 0.90881 0.99474 0.93846 1.67645 1.33100 1.03643 1.14636 1.22921 0.94334 0.91775 0.96515 1.21085 0.98960 0.93380 0.99100 1.21029 0.96663 0.95014 1.00365 0.93293 0.90734 0.97112 0.95172 0.99057 0.92845 0.94863 0.90358 0.85451 0.86117 0.84495 0.84667 0.82857 0.82534 0.86020 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 8.95 60.07 0.54 1.21 16 2 N -0.53 -11.41 4.74 -245.83 -1.17 -12.57 16 3 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 4 C -0.51 -14.20 8.46 -34.44 -0.29 -14.49 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.09 1.50 5.11 -4.98 -0.03 1.47 16 13 C -0.05 -0.74 4.89 -104.56 -0.51 -1.25 16 14 C -0.10 -1.35 9.68 -39.63 -0.38 -1.74 16 15 C -0.11 -1.29 9.44 -39.25 -0.37 -1.66 16 16 C -0.06 -0.77 5.88 -104.89 -0.62 -1.38 16 17 C -0.08 -0.87 5.89 -104.75 -0.62 -1.49 16 18 C -0.07 -0.69 9.54 -38.95 -0.37 -1.06 16 19 C -0.17 -1.35 10.10 -39.49 -0.40 -1.75 16 20 C 0.09 0.78 11.17 -17.50 -0.20 0.58 16 21 N -0.48 -5.44 10.35 -12.97 -0.13 -5.58 16 22 C 0.10 1.11 10.60 -17.19 -0.18 0.93 16 23 C -0.11 -1.28 9.44 -39.26 -0.37 -1.65 16 24 C -0.11 -1.50 7.94 -39.63 -0.31 -1.82 16 25 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 26 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.16 6.28 -52.49 -0.33 0.83 16 35 H 0.14 1.03 6.33 -52.49 -0.33 0.70 16 36 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.16 1.43 6.23 -52.49 -0.33 1.10 16 39 H 0.12 1.15 6.24 -52.49 -0.33 0.83 16 40 H 0.12 1.53 8.03 -52.48 -0.42 1.10 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -31.37 332.25 -10.08 -41.45 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.27 Total: -1.35 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -4.23 Total: -17.69 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.56 Total: -43.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.37 -10.08 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139639778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.501 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds