Wall clock time and date at job start Tue Mar 31 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46891 * 111.00125 * 2 1 4 4 C 1.50705 * 109.47568 * 293.96018 * 3 2 1 5 5 H 1.07997 * 119.99274 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99910 * 180.02562 * 4 3 2 7 7 N 1.31503 * 120.00305 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99640 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47114 * 89.99612 * 8 6 4 10 10 H 1.48493 * 109.47175 * 209.99554 * 8 6 4 11 11 H 1.48501 * 109.46996 * 329.99834 * 8 6 4 12 12 C 1.46904 * 110.99929 * 123.96129 * 2 1 3 13 13 C 1.50693 * 109.47244 * 66.04358 * 12 2 1 14 14 C 1.38323 * 119.87720 * 89.99991 * 13 12 2 15 15 C 1.38021 * 120.12325 * 179.97438 * 14 13 12 16 16 C 1.39351 * 119.87464 * 0.26338 * 15 14 13 17 17 C 1.48363 * 120.12162 * 179.69644 * 16 15 14 18 18 C 1.39769 * 120.90342 * 359.71900 * 17 16 15 19 19 C 1.37988 * 119.01900 * 179.79832 * 18 17 16 20 20 N 1.31924 * 120.87688 * 0.48311 * 19 18 17 21 21 C 1.31924 * 122.00741 * 359.74264 * 20 19 18 22 22 C 1.37971 * 120.88441 * 0.02562 * 21 20 19 23 23 C 1.39351 * 119.75462 * 359.43973 * 16 15 14 24 24 C 1.38019 * 119.87684 * 0.57884 * 23 16 15 25 25 H 1.08998 * 109.46744 * 296.04037 * 1 2 3 26 26 H 1.09001 * 109.46880 * 56.04266 * 1 2 3 27 27 H 1.09004 * 109.46925 * 176.04278 * 1 2 3 28 28 H 1.09003 * 109.47001 * 53.95920 * 3 2 1 29 29 H 1.09001 * 109.47410 * 173.95484 * 3 2 1 30 30 H 0.97002 * 119.99991 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46662 * 306.03868 * 12 2 1 32 32 H 1.08995 * 109.46535 * 186.04515 * 12 2 1 33 33 H 1.07999 * 119.93902 * 359.97438 * 14 13 12 34 34 H 1.08002 * 120.05980 * 179.97438 * 15 14 13 35 35 H 1.07995 * 120.48930 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.55809 * 180.20325 * 19 18 17 37 37 H 1.07996 * 119.55357 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.49411 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.06378 * 180.27414 * 23 16 15 40 40 H 1.07994 * 119.93975 * 179.72155 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0277 3.3492 -1.5287 7 7 2.7129 4.0015 -0.6153 8 14 1.5838 4.1866 -3.1384 9 1 0.2717 4.8675 -2.9968 10 1 2.6264 5.1874 -3.4797 11 1 1.5003 3.1707 -4.2183 12 6 1.9955 -0.7661 1.1375 13 6 1.6370 -2.2205 0.9727 14 6 2.4963 -3.0700 0.2994 15 6 2.1732 -4.4030 0.1460 16 6 0.9761 -4.8915 0.6659 17 6 0.6202 -6.3220 0.4983 18 6 1.4694 -7.1978 -0.1839 19 6 1.1019 -8.5215 -0.3134 20 7 -0.0368 -8.9601 0.1879 21 6 -0.8683 -8.1658 0.8344 22 6 -0.5761 -6.8292 1.0131 23 6 0.1171 -4.0324 1.3487 24 6 0.4501 -2.7012 1.4959 25 1 -0.3633 0.4511 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5612 1.9272 0.8310 29 1 3.0798 1.3443 0.1082 30 1 2.9875 4.9176 -0.7772 31 1 1.5612 -0.3874 2.0627 32 1 3.0797 -0.6612 1.1755 33 1 3.4218 -2.6895 -0.1068 34 1 2.8447 -5.0653 -0.3802 35 1 2.4008 -6.8443 -0.6010 36 1 1.7531 -9.2065 -0.8360 37 1 -1.7904 -8.5669 1.2283 38 1 -1.2615 -6.1845 1.5431 39 1 -0.8098 -4.4066 1.7575 40 1 -0.2169 -2.0336 2.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140167879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:20 Heat of formation + Delta-G solvation = 62.040915 kcal Electronic energy + Delta-G solvation = -20408.343385 eV Core-core repulsion = 17380.675391 eV Total energy + Delta-G solvation = -3027.667994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50649 -39.12761 -36.51127 -33.80916 -32.49705 -31.77774 -30.73910 -30.28219 -27.22068 -26.70850 -24.45560 -24.09756 -22.85895 -21.94696 -20.99727 -20.15026 -17.74030 -16.51431 -16.42048 -16.14391 -15.28734 -14.99084 -14.86967 -14.67810 -14.29299 -14.14023 -14.06065 -13.76436 -13.36001 -13.18770 -12.62906 -12.50820 -12.05010 -11.96032 -11.52695 -11.20640 -11.16336 -10.93131 -10.76666 -10.66939 -10.46548 -10.29294 -9.88646 -9.72275 -9.40946 -9.25837 -8.88516 -8.48214 -8.25034 -7.30273 -6.06063 -4.07485 0.46860 0.91676 1.46280 1.84507 3.29721 3.36082 3.40614 3.54200 3.95589 4.22006 4.30576 4.40914 4.48149 4.78561 4.86715 4.93500 4.96321 5.03791 5.20024 5.30664 5.34958 5.45384 5.51718 5.54621 5.63925 5.78065 5.93955 5.97373 6.09712 6.12579 6.19367 6.29645 6.39548 6.49998 6.54799 6.70869 6.79600 6.99995 7.22569 7.28331 7.74706 7.75587 8.02482 8.13982 8.49061 9.00097 9.56876 11.04804 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034103 B = 0.002822 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.848311 B = 9920.805407 C =10064.290023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.084 3.916 13 C -0.044 4.044 14 C -0.100 4.100 15 C -0.100 4.100 16 C -0.076 4.076 17 C 0.015 3.985 18 C -0.171 4.171 19 C 0.101 3.899 20 N -0.495 5.495 21 C 0.101 3.899 22 C -0.172 4.172 23 C -0.101 4.101 24 C -0.115 4.115 25 H 0.010 0.990 26 H 0.074 0.926 27 H 0.048 0.952 28 H -0.008 1.008 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -20.736 4.791 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.044 4.044 13 C -0.045 4.045 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.076 4.076 17 C 0.007 3.993 18 C -0.191 4.191 19 C -0.055 4.055 20 N -0.205 5.205 21 C -0.056 4.056 22 C -0.191 4.191 23 C -0.119 4.119 24 C -0.134 4.134 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.848 -21.654 4.284 22.407 hybrid contribution -0.255 1.969 0.007 1.985 sum -4.104 -19.685 4.292 20.561 Atomic orbital electron populations 1.22293 0.88856 0.99786 1.00498 1.62162 1.07124 1.17701 1.38810 1.19766 0.95422 0.81286 0.96775 1.21148 1.34860 0.96912 1.01665 0.91837 1.24986 0.95257 0.97340 0.97033 1.69951 1.38317 1.11456 1.34131 0.86495 0.78002 0.79229 0.83698 1.20734 1.21224 1.19738 1.21120 1.00683 0.89081 0.93470 1.20152 0.93619 0.96006 0.94748 1.21032 1.00254 0.92537 0.98007 1.21177 0.95771 0.95750 0.99104 1.18566 0.96085 0.91207 1.01787 1.19236 0.93404 0.92743 0.93876 1.22258 1.01229 0.94639 1.00944 1.22680 0.93200 0.93695 0.95954 1.67635 1.04031 1.39234 1.09556 1.22667 0.98217 0.90065 0.94618 1.22238 0.97605 0.97171 1.02125 1.21111 0.98896 0.93331 0.98585 1.21038 0.96727 0.95014 1.00599 0.97104 0.90700 0.93331 0.99054 0.95141 0.92892 0.94825 0.90287 0.85325 0.85897 0.84485 0.82716 0.82756 0.84576 0.86017 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.95 60.07 0.54 1.20 16 2 N -0.53 -11.31 4.74 -245.82 -1.17 -12.48 16 3 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 4 C -0.51 -14.12 8.46 -34.44 -0.29 -14.42 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.55 5.46 -17.83 -0.10 1.45 16 7 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.08 1.47 5.11 -4.98 -0.03 1.44 16 13 C -0.04 -0.66 4.89 -104.56 -0.51 -1.17 16 14 C -0.10 -1.37 9.68 -39.63 -0.38 -1.75 16 15 C -0.10 -1.20 9.45 -39.25 -0.37 -1.57 16 16 C -0.08 -0.91 5.88 -104.90 -0.62 -1.52 16 17 C 0.02 0.17 5.91 -104.58 -0.62 -0.45 16 18 C -0.17 -1.65 9.50 -39.10 -0.37 -2.02 16 19 C 0.10 0.96 11.17 -17.60 -0.20 0.76 16 20 N -0.50 -5.41 10.35 -13.34 -0.14 -5.55 16 21 C 0.10 0.95 11.17 -17.61 -0.20 0.75 16 22 C -0.17 -1.64 9.50 -39.11 -0.37 -2.01 16 23 C -0.10 -1.18 9.45 -39.25 -0.37 -1.56 16 24 C -0.12 -1.52 7.95 -39.63 -0.31 -1.84 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 27 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.08 1.35 7.87 -51.93 -0.41 0.95 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 35 H 0.14 1.06 6.34 -52.49 -0.33 0.73 16 36 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.03 6.34 -52.49 -0.33 0.70 16 39 H 0.12 1.13 6.30 -52.48 -0.33 0.80 16 40 H 0.12 1.50 8.03 -52.49 -0.42 1.08 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -31.32 332.46 -10.08 -41.40 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.28 Total: -1.33 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.22 Total: -17.79 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.57 Total: -43.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.32 -10.08 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140167879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.445 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds