Wall clock time and date at job start Tue Mar 31 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00365 * 2 1 4 4 C 1.50706 * 109.47198 * 293.95327 * 3 2 1 5 5 H 1.08000 * 119.99472 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99939 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00187 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99766 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47062 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47065 * 119.99913 * 8 6 4 11 11 H 1.48502 * 109.47159 * 239.99801 * 8 6 4 12 12 C 1.46905 * 110.99712 * 123.95751 * 2 1 3 13 13 C 1.50700 * 109.47467 * 66.04111 * 12 2 1 14 14 C 1.38035 * 120.06417 * 253.70950 * 13 12 2 15 15 C 1.38300 * 120.12215 * 180.02562 * 14 13 12 16 16 C 1.38336 * 120.24256 * 359.97438 * 15 14 13 17 17 C 1.37997 * 120.12270 * 359.97438 * 16 15 14 18 18 C 1.39315 * 120.05692 * 73.72945 * 13 12 2 19 19 C 1.48399 * 120.12491 * 359.95439 * 18 13 12 20 20 C 1.39756 * 120.53319 * 56.59230 * 19 18 13 21 21 C 1.38417 * 118.31105 * 179.97438 * 20 19 18 22 22 C 1.38305 * 119.28333 * 359.97438 * 21 20 19 23 23 N 1.31888 * 121.02804 * 0.02851 * 22 21 20 24 24 C 1.31742 * 121.85504 * 359.67822 * 23 22 21 25 25 H 1.08995 * 109.47279 * 296.05065 * 1 2 3 26 26 H 1.09003 * 109.46930 * 56.04881 * 1 2 3 27 27 H 1.09003 * 109.47619 * 176.04236 * 1 2 3 28 28 H 1.08995 * 109.47214 * 53.95200 * 3 2 1 29 29 H 1.09004 * 109.46943 * 173.95439 * 3 2 1 30 30 H 0.96994 * 119.99896 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46581 * 306.03958 * 12 2 1 32 32 H 1.08999 * 109.46756 * 186.04364 * 12 2 1 33 33 H 1.07999 * 119.93614 * 359.97438 * 14 13 12 34 34 H 1.08004 * 119.87669 * 180.02562 * 15 14 13 35 35 H 1.08003 * 119.93877 * 179.72380 * 16 15 14 36 36 H 1.07998 * 120.05851 * 179.97438 * 17 16 15 37 37 H 1.07999 * 120.84788 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.35484 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.48956 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.71067 * 180.29231 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0279 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6154 8 14 1.5829 4.1868 -3.1381 9 1 0.8147 3.2445 -3.9909 10 1 0.7565 5.3885 -2.8585 11 1 2.8244 4.5933 -3.8444 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2205 0.9729 14 6 0.6495 -2.7824 1.7571 15 6 0.3198 -4.1171 1.6073 16 6 0.9762 -4.8962 0.6715 17 6 1.9641 -4.3446 -0.1185 18 6 2.3014 -3.0005 0.0291 19 6 3.3634 -2.4019 -0.8172 20 6 4.4695 -1.7784 -0.2333 21 6 5.4328 -1.2360 -1.0662 22 6 5.2717 -1.3281 -2.4367 23 7 4.2166 -1.9227 -2.9588 24 6 3.2771 -2.4583 -2.2064 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 1.5612 1.9273 0.8308 29 1 3.0798 1.3442 0.1082 30 1 2.9877 4.9175 -0.7774 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 0.1341 -2.1787 2.4895 34 1 -0.4536 -4.5526 2.2227 35 1 0.7179 -5.9391 0.5617 36 1 2.4762 -4.9539 -0.8485 37 1 4.5701 -1.7212 0.8405 38 1 6.3013 -0.7470 -0.6502 39 1 6.0215 -0.9063 -3.0897 40 1 2.4299 -2.9411 -2.6707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140314034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:10 Heat of formation + Delta-G solvation = 65.716663 kcal Electronic energy + Delta-G solvation = -21912.027720 eV Core-core repulsion = 18884.519119 eV Total energy + Delta-G solvation = -3027.508602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15409 -38.72857 -36.33335 -33.18374 -32.60793 -31.63141 -31.11120 -29.03995 -27.17468 -26.61057 -24.10153 -23.53648 -22.97948 -21.58113 -20.95009 -19.95352 -17.01660 -16.51780 -16.24967 -15.90404 -15.33200 -15.12635 -14.84964 -14.16785 -14.06148 -13.77573 -13.40354 -13.30877 -13.23186 -12.78097 -12.42813 -12.36929 -11.92170 -11.84280 -11.44325 -11.13477 -10.99687 -10.90382 -10.79681 -10.58125 -10.43099 -9.86988 -9.47466 -9.23313 -9.18237 -8.89505 -8.66291 -8.42746 -8.09625 -7.22981 -6.01994 -4.02399 1.12547 1.50913 1.64956 1.84987 3.31870 3.39348 3.45325 3.83977 4.22865 4.45007 4.70211 4.94061 4.97001 5.00857 5.10173 5.19573 5.25804 5.28924 5.35214 5.47417 5.50628 5.67598 5.81564 5.88670 6.01530 6.04672 6.13652 6.19309 6.23661 6.34873 6.43741 6.51235 6.54390 6.59371 6.75859 6.86275 7.05496 7.11634 7.27258 7.32640 7.81061 8.07802 8.19851 8.37108 8.54693 9.05273 9.61792 11.08937 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.006148 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.462976 B = 4553.134261 C = 5582.088230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.527 5.527 3 C 0.196 3.804 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.083 3.917 13 C -0.049 4.049 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.025 4.025 19 C -0.072 4.072 20 C -0.060 4.060 21 C -0.165 4.165 22 C 0.098 3.902 23 N -0.482 5.482 24 C 0.121 3.879 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.045 0.955 28 H -0.011 1.011 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -15.972 3.957 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.251 5.251 3 C 0.071 3.929 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.045 4.045 13 C -0.049 4.049 14 C -0.135 4.135 15 C -0.138 4.138 16 C -0.145 4.145 17 C -0.128 4.128 18 C -0.026 4.026 19 C -0.073 4.073 20 C -0.086 4.086 21 C -0.185 4.185 22 C -0.059 4.059 23 N -0.190 5.190 24 C -0.037 4.037 25 H 0.028 0.972 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.007 0.993 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.962 -16.036 2.633 16.279 hybrid contribution -0.492 1.244 0.942 1.636 sum 0.470 -14.792 3.574 15.225 Atomic orbital electron populations 1.22214 0.88918 0.99568 1.00335 1.62139 1.06877 1.17496 1.38563 1.19706 0.95164 0.81391 0.96625 1.21156 1.34489 0.96769 1.01526 0.91947 1.24956 0.95333 0.97346 0.96887 1.69964 1.38618 1.11368 1.34000 0.86481 0.78209 0.79302 0.83717 1.19653 1.21149 1.20994 1.21184 1.00692 0.89195 0.93468 1.20038 0.94918 0.95702 0.94269 1.21013 0.97490 0.95155 0.99826 1.21101 0.99916 0.94080 0.98745 1.20968 0.97055 0.99634 0.96866 1.21148 0.97890 0.94074 0.99649 1.18474 0.95846 0.92783 0.95532 1.19488 0.94189 0.99354 0.94314 1.21468 0.92699 0.94480 0.99910 1.21957 1.00488 1.01003 0.95065 1.22629 0.94969 0.95163 0.93115 1.67565 1.02003 1.08899 1.40575 1.22632 0.96260 0.95454 0.89322 0.97247 0.90814 0.93630 0.99323 0.95476 0.93064 0.95186 0.90225 0.86269 0.86414 0.86306 0.86137 0.85441 0.85131 0.83309 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.17 60.06 0.55 1.32 16 2 N -0.53 -11.33 4.58 -245.82 -1.13 -12.45 16 3 C 0.20 5.10 4.72 -4.98 -0.02 5.08 16 4 C -0.50 -14.21 8.46 -34.44 -0.29 -14.50 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 8 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.08 1.48 4.40 -4.97 -0.02 1.46 16 13 C -0.05 -0.75 4.39 -104.30 -0.46 -1.21 16 14 C -0.12 -1.56 9.21 -39.63 -0.37 -1.92 16 15 C -0.12 -1.39 10.04 -39.52 -0.40 -1.78 16 16 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 17 C -0.11 -1.38 9.63 -39.25 -0.38 -1.75 16 18 C -0.03 -0.37 5.43 -104.90 -0.57 -0.94 16 19 C -0.07 -1.14 4.78 -104.75 -0.50 -1.64 16 20 C -0.06 -0.92 8.13 -38.95 -0.32 -1.24 16 21 C -0.17 -2.48 10.10 -39.49 -0.40 -2.88 16 22 C 0.10 1.56 11.17 -17.50 -0.20 1.37 16 23 N -0.48 -8.52 10.35 -12.97 -0.13 -8.65 16 24 C 0.12 2.02 10.80 -17.19 -0.19 1.83 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 27 H 0.04 0.82 6.94 -51.93 -0.36 0.46 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.53 7.92 -51.93 -0.41 0.12 16 32 H 0.08 1.43 4.98 -51.93 -0.26 1.17 16 33 H 0.12 1.47 7.99 -52.49 -0.42 1.05 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.13 1.76 7.01 -52.49 -0.37 1.40 16 38 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 40 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -31.63 334.56 -10.02 -41.65 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.47 Total: 0.56 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.04 Total: -17.15 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.52 Total: -47.19 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.63 -10.02 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140314034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.368 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds