Wall clock time and date at job start Tue Mar 31 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00365 * 2 1 4 4 C 1.50706 * 109.47198 * 293.95327 * 3 2 1 5 5 H 1.08000 * 119.99472 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99939 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00187 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99766 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47062 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47065 * 119.99913 * 8 6 4 11 11 H 1.48502 * 109.47159 * 239.99801 * 8 6 4 12 12 C 1.46905 * 110.99712 * 123.95751 * 2 1 3 13 13 C 1.50700 * 109.47467 * 66.04111 * 12 2 1 14 14 C 1.38035 * 120.06417 * 253.70950 * 13 12 2 15 15 C 1.38300 * 120.12215 * 180.02562 * 14 13 12 16 16 C 1.38336 * 120.24256 * 359.97438 * 15 14 13 17 17 C 1.37997 * 120.12270 * 359.97438 * 16 15 14 18 18 C 1.39315 * 120.05692 * 73.72945 * 13 12 2 19 19 C 1.48399 * 120.12491 * 359.95439 * 18 13 12 20 20 C 1.39756 * 120.53319 * 56.59230 * 19 18 13 21 21 C 1.38417 * 118.31105 * 179.97438 * 20 19 18 22 22 C 1.38305 * 119.28333 * 359.97438 * 21 20 19 23 23 N 1.31888 * 121.02804 * 0.02851 * 22 21 20 24 24 C 1.31742 * 121.85504 * 359.67822 * 23 22 21 25 25 H 1.08995 * 109.47279 * 296.05065 * 1 2 3 26 26 H 1.09003 * 109.46930 * 56.04881 * 1 2 3 27 27 H 1.09003 * 109.47619 * 176.04236 * 1 2 3 28 28 H 1.08995 * 109.47214 * 53.95200 * 3 2 1 29 29 H 1.09004 * 109.46943 * 173.95439 * 3 2 1 30 30 H 0.96994 * 119.99896 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46581 * 306.03958 * 12 2 1 32 32 H 1.08999 * 109.46756 * 186.04364 * 12 2 1 33 33 H 1.07999 * 119.93614 * 359.97438 * 14 13 12 34 34 H 1.08004 * 119.87669 * 180.02562 * 15 14 13 35 35 H 1.08003 * 119.93877 * 179.72380 * 16 15 14 36 36 H 1.07998 * 120.05851 * 179.97438 * 17 16 15 37 37 H 1.07999 * 120.84788 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.35484 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.48956 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.71067 * 180.29231 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0279 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6154 8 14 1.5829 4.1868 -3.1381 9 1 0.8147 3.2445 -3.9909 10 1 0.7565 5.3885 -2.8585 11 1 2.8244 4.5933 -3.8444 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2205 0.9729 14 6 0.6495 -2.7824 1.7571 15 6 0.3198 -4.1171 1.6073 16 6 0.9762 -4.8962 0.6715 17 6 1.9641 -4.3446 -0.1185 18 6 2.3014 -3.0005 0.0291 19 6 3.3634 -2.4019 -0.8172 20 6 4.4695 -1.7784 -0.2333 21 6 5.4328 -1.2360 -1.0662 22 6 5.2717 -1.3281 -2.4367 23 7 4.2166 -1.9227 -2.9588 24 6 3.2771 -2.4583 -2.2064 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 1.5612 1.9273 0.8308 29 1 3.0798 1.3442 0.1082 30 1 2.9877 4.9175 -0.7774 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 0.1341 -2.1787 2.4895 34 1 -0.4536 -4.5526 2.2227 35 1 0.7179 -5.9391 0.5617 36 1 2.4762 -4.9539 -0.8485 37 1 4.5701 -1.7212 0.8405 38 1 6.3013 -0.7470 -0.6502 39 1 6.0215 -0.9063 -3.0897 40 1 2.4299 -2.9411 -2.6707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140314034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:09 Heat of formation + Delta-G solvation = 47.480521 kcal Electronic energy + Delta-G solvation = -21912.818499 eV Core-core repulsion = 18884.519119 eV Total energy + Delta-G solvation = -3028.299380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32068 -39.87909 -37.95183 -34.83090 -34.18580 -32.82212 -32.40077 -30.16437 -29.14842 -28.07209 -25.76696 -24.73769 -24.30648 -22.76501 -22.45661 -21.30376 -18.57731 -18.11198 -17.49092 -17.13610 -16.83086 -16.46765 -16.32358 -15.85524 -15.33959 -15.27874 -14.86392 -14.53928 -14.31533 -14.03663 -14.01040 -13.61764 -13.49015 -13.32438 -12.94565 -12.84223 -12.62233 -12.58201 -12.35089 -12.09917 -11.95779 -11.71374 -11.28368 -10.67898 -10.63915 -10.42161 -10.07343 -9.69984 -9.22610 -8.98230 -8.22358 -6.31097 0.01036 0.43069 0.50073 0.73733 1.36230 1.37773 1.50727 2.37608 2.80248 3.00845 3.10260 3.46091 3.57946 3.80145 3.91018 4.03081 4.04129 4.11129 4.26377 4.35588 4.37480 4.48348 4.61355 4.64260 4.70582 4.74867 4.79263 4.89943 5.03981 5.06274 5.14568 5.17296 5.24256 5.26729 5.35402 5.56862 5.62212 5.64036 5.77286 5.89388 6.03528 6.12806 6.31847 6.61376 6.84239 7.12949 7.38098 8.88551 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.006148 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.462976 B = 4553.134261 C = 5582.088230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.531 5.531 3 C 0.216 3.784 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.087 3.913 13 C -0.068 4.068 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.041 4.041 19 C -0.073 4.073 20 C -0.074 4.074 21 C -0.170 4.170 22 C 0.080 3.920 23 N -0.507 5.507 24 C 0.102 3.898 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.070 0.930 28 H -0.040 1.040 29 H 0.002 0.998 30 H 0.264 0.736 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -17.744 3.955 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.255 5.255 3 C 0.090 3.910 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.204 1.204 12 C -0.041 4.041 13 C -0.069 4.069 14 C -0.140 4.140 15 C -0.132 4.132 16 C -0.135 4.135 17 C -0.129 4.129 18 C -0.042 4.042 19 C -0.075 4.075 20 C -0.099 4.099 21 C -0.189 4.189 22 C -0.077 4.077 23 N -0.215 5.215 24 C -0.055 4.055 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.089 0.911 28 H -0.022 1.022 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.074 -17.829 2.640 18.024 hybrid contribution -0.180 1.698 1.018 1.988 sum -0.254 -16.132 3.657 16.543 Atomic orbital electron populations 1.22136 0.87936 1.00704 0.99470 1.62023 1.07764 1.14844 1.40856 1.19294 0.93404 0.83638 0.94710 1.21386 1.34513 0.97317 1.02159 0.92725 1.25792 0.95094 0.97998 1.00303 1.70071 1.39405 1.11839 1.35885 0.85451 0.78149 0.78297 0.79463 1.19321 1.20113 1.20353 1.21147 1.00167 0.90777 0.92007 1.19800 0.96917 0.93981 0.96207 1.21164 0.96898 0.96373 0.99599 1.21465 1.00012 0.93076 0.98605 1.21387 0.95535 1.01157 0.95422 1.21374 0.98243 0.93141 1.00125 1.18529 0.96024 0.93930 0.95719 1.19663 0.94581 0.99018 0.94267 1.21743 0.92931 0.94622 1.00642 1.22275 1.01159 1.00554 0.94917 1.23056 0.95229 0.95351 0.94023 1.67547 1.02796 1.09731 1.41441 1.22859 0.96629 0.96118 0.89892 0.96999 0.92909 0.91136 1.02228 0.98036 0.92712 0.95152 0.90947 0.85537 0.83296 0.82952 0.84667 0.84426 0.82899 0.81275 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.84 9.17 127.69 1.17 3.01 16 2 N -0.53 -23.28 4.58 -931.64 -4.27 -27.55 16 3 C 0.22 11.65 4.72 85.56 0.40 12.06 16 4 C -0.52 -29.92 8.46 25.60 0.22 -29.70 16 5 H 0.05 3.20 7.12 -2.91 -0.02 3.18 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 8 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 C 0.09 3.14 4.40 85.56 0.38 3.52 16 13 C -0.07 -2.05 4.39 -19.65 -0.09 -2.13 16 14 C -0.12 -2.97 9.21 22.24 0.20 -2.77 16 15 C -0.11 -2.17 10.04 22.31 0.22 -1.94 16 16 C -0.12 -2.14 10.03 22.24 0.22 -1.92 16 17 C -0.11 -2.50 9.63 22.48 0.22 -2.29 16 18 C -0.04 -1.17 5.43 -20.04 -0.11 -1.28 16 19 C -0.07 -2.34 4.78 -19.95 -0.10 -2.44 16 20 C -0.07 -2.30 8.13 22.68 0.18 -2.12 16 21 C -0.17 -5.13 10.10 22.33 0.23 -4.91 16 22 C 0.08 2.57 11.17 84.70 0.95 3.51 16 23 N -0.51 -18.11 10.35 -194.96 -2.02 -20.13 16 24 C 0.10 3.43 10.80 84.96 0.92 4.35 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 2.31 6.76 -2.39 -0.02 2.29 16 27 H 0.07 2.46 6.94 -2.39 -0.02 2.44 16 28 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 29 H 0.00 0.09 7.93 -2.38 -0.02 0.07 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.03 1.08 7.92 -2.39 -0.02 1.06 16 32 H 0.07 2.69 4.98 -2.39 -0.01 2.68 16 33 H 0.13 2.84 7.99 -2.91 -0.02 2.82 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.14 3.88 7.01 -2.91 -0.02 3.85 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.16 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -68.94 334.56 2.53 -66.41 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.02 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.48 Total: -24.22 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -6.00 Total: -103.85 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.94 2.53 -66.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140314034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.888 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds