Wall clock time and date at job start Tue Mar 31 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00170 * 2 1 4 4 C 1.50692 * 109.47447 * 293.95594 * 3 2 1 5 5 H 1.08009 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00168 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00222 * 359.97438 * 6 4 3 8 8 Si 1.86808 * 119.99833 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47233 * 89.99941 * 8 6 4 10 10 H 1.48501 * 109.46666 * 209.99566 * 8 6 4 11 11 H 1.48491 * 109.47115 * 329.99145 * 8 6 4 12 12 C 1.46900 * 110.99892 * 123.95671 * 2 1 3 13 13 C 1.50699 * 109.47117 * 66.04199 * 12 2 1 14 14 C 1.38325 * 119.87206 * 90.00290 * 13 12 2 15 15 C 1.38017 * 120.12186 * 179.69888 * 14 13 12 16 16 C 1.39357 * 119.87634 * 0.27927 * 15 14 13 17 17 C 1.48347 * 120.12514 * 180.02562 * 16 15 14 18 18 C 1.39333 * 119.72813 * 179.72091 * 17 16 15 19 19 C 1.38404 * 119.06737 * 179.79600 * 18 17 16 20 20 C 1.38783 * 118.50819 * 0.47519 * 19 18 17 21 21 C 1.38251 * 119.36727 * 359.74740 * 20 19 18 22 22 N 1.31758 * 120.89338 * 0.02562 * 21 20 19 23 23 C 1.39365 * 119.75035 * 359.97438 * 16 15 14 24 24 C 1.38010 * 119.87772 * 359.97438 * 23 16 15 25 25 H 1.08993 * 109.47007 * 296.04712 * 1 2 3 26 26 H 1.09002 * 109.46894 * 56.04200 * 1 2 3 27 27 H 1.08998 * 109.47303 * 176.04182 * 1 2 3 28 28 H 1.09005 * 109.46951 * 53.95504 * 3 2 1 29 29 H 1.08997 * 109.47042 * 173.95116 * 3 2 1 30 30 H 0.96998 * 120.00275 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46966 * 306.04591 * 12 2 1 32 32 H 1.09002 * 109.47397 * 186.04491 * 12 2 1 33 33 H 1.08002 * 119.94233 * 359.97438 * 14 13 12 34 34 H 1.07999 * 120.06232 * 180.25523 * 15 14 13 35 35 H 1.08005 * 120.46793 * 0.02562 * 18 17 16 36 36 H 1.07994 * 120.74453 * 180.24992 * 19 18 17 37 37 H 1.08004 * 120.31250 * 179.72785 * 20 19 18 38 38 H 1.07999 * 119.54710 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.05769 * 179.97438 * 23 16 15 40 40 H 1.08000 * 119.93722 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2983 5 1 1.0746 1.5113 -2.0488 6 6 2.0278 3.3491 -1.5287 7 7 2.7130 4.0015 -0.6153 8 14 1.5840 4.1865 -3.1386 9 1 0.2719 4.8675 -2.9971 10 1 2.6267 5.1872 -3.4798 11 1 1.5007 3.1706 -4.2184 12 6 1.9954 -0.7660 1.1376 13 6 1.6368 -2.2204 0.9728 14 6 2.4962 -3.0700 0.2996 15 6 2.1759 -4.4042 0.1512 16 6 0.9813 -4.8938 0.6758 17 6 0.6317 -6.3270 0.5199 18 6 -0.5621 -6.8090 1.0528 19 6 -0.8767 -8.1476 0.8956 20 6 0.0189 -8.9634 0.2185 21 6 1.1878 -8.4194 -0.2805 22 7 1.4608 -7.1404 -0.1209 23 6 0.1168 -4.0322 1.3485 24 6 0.4478 -2.7001 1.4919 25 1 -0.3633 0.4512 0.9232 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 1.5612 1.9273 0.8310 29 1 3.0797 1.3443 0.1083 30 1 2.9876 4.9176 -0.7772 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 3.4218 -2.6895 -0.1066 34 1 2.8495 -5.0675 -0.3710 35 1 -1.2343 -6.1465 1.5779 36 1 -1.7966 -8.5490 1.2942 37 1 -0.1952 -10.0133 0.0830 38 1 1.8870 -9.0517 -0.8075 39 1 -0.8105 -4.4062 1.7567 40 1 -0.2212 -2.0316 2.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140377728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:01 Heat of formation + Delta-G solvation = 63.723618 kcal Electronic energy + Delta-G solvation = -20416.567152 eV Core-core repulsion = 17388.972125 eV Total energy + Delta-G solvation = -3027.595027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48395 -38.98350 -36.36688 -33.24660 -32.73247 -32.26916 -30.76373 -29.93942 -27.15667 -26.61699 -24.37451 -24.03357 -22.79770 -21.89762 -20.94590 -20.07138 -17.66651 -16.46318 -16.41532 -16.13169 -15.38253 -14.92851 -14.80981 -14.50827 -14.32195 -14.13283 -13.66926 -13.64339 -13.34506 -13.11230 -12.64972 -12.34458 -11.95482 -11.88661 -11.49507 -11.14055 -11.11487 -10.89711 -10.71659 -10.63865 -10.40068 -10.17280 -9.86621 -9.68452 -9.63013 -9.20925 -8.74222 -8.43969 -8.10486 -7.23890 -6.02225 -4.03413 0.47784 1.03720 1.60419 1.79580 3.32571 3.38754 3.43676 3.54907 3.99630 4.09746 4.44423 4.45665 4.59467 4.79654 4.86559 4.99584 5.09166 5.17344 5.25001 5.32434 5.35275 5.46296 5.58301 5.65846 5.80866 5.90003 5.96342 6.03387 6.15934 6.23929 6.27378 6.35186 6.39121 6.61896 6.64381 6.76490 6.91352 7.12945 7.28074 7.33287 7.79036 7.80192 8.07706 8.19422 8.54186 9.04264 9.60745 11.08653 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.002835 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.304798 B = 9874.048515 C =10010.474234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.085 3.915 13 C -0.043 4.043 14 C -0.106 4.106 15 C -0.077 4.077 16 C -0.071 4.071 17 C 0.182 3.818 18 C -0.169 4.169 19 C -0.072 4.072 20 C -0.186 4.186 21 C 0.105 3.895 22 N -0.481 5.481 23 C -0.100 4.100 24 C -0.120 4.120 25 H 0.010 0.990 26 H 0.074 0.926 27 H 0.049 0.951 28 H -0.009 1.009 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -23.512 5.319 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.043 4.043 13 C -0.044 4.044 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.072 4.072 17 C 0.047 3.953 18 C -0.189 4.189 19 C -0.098 4.098 20 C -0.206 4.206 21 C -0.053 4.053 22 N -0.190 5.190 23 C -0.119 4.119 24 C -0.138 4.138 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.941 -23.222 4.576 24.179 hybrid contribution -1.334 0.556 0.237 1.465 sum -6.275 -22.666 4.814 24.006 Atomic orbital electron populations 1.22290 0.88885 0.99825 1.00421 1.62152 1.07105 1.17634 1.38901 1.19763 0.95435 0.81337 0.96724 1.21158 1.34758 0.96886 1.01673 0.91834 1.24989 0.95293 0.97350 0.97013 1.69956 1.38392 1.11433 1.34124 0.86497 0.77964 0.79221 0.83754 1.20764 1.21248 1.19738 1.21118 1.00655 0.89152 0.93373 1.20152 0.93618 0.95924 0.94680 1.21079 1.00336 0.92688 0.98372 1.21254 0.95622 0.95292 0.97402 1.18386 0.96483 0.89931 1.02428 1.19880 0.90081 0.93029 0.92337 1.22125 0.98221 0.96470 1.02050 1.21528 0.99015 0.93382 0.95896 1.22151 0.96222 1.01264 1.00943 1.22738 0.95335 0.91163 0.96044 1.67651 1.32212 1.04647 1.14467 1.21068 0.98745 0.93322 0.98765 1.20968 0.96831 0.94899 1.01121 0.97149 0.90763 0.93263 0.99077 0.95135 0.92929 0.94880 0.90314 0.85410 0.85091 0.84510 0.84815 0.84911 0.82670 0.86090 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.94 60.07 0.54 1.22 16 2 N -0.53 -11.63 4.74 -245.83 -1.17 -12.80 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.51 -14.31 8.46 -34.45 -0.29 -14.60 16 5 H 0.06 1.79 7.12 -52.48 -0.37 1.41 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.09 1.54 5.11 -4.98 -0.03 1.51 16 13 C -0.04 -0.68 4.89 -104.56 -0.51 -1.19 16 14 C -0.11 -1.61 9.68 -39.63 -0.38 -1.99 16 15 C -0.08 -1.10 9.58 -39.25 -0.38 -1.47 16 16 C -0.07 -0.96 5.88 -104.90 -0.62 -1.58 16 17 C 0.18 2.28 6.73 -82.95 -0.56 1.72 16 18 C -0.17 -1.67 9.46 -39.11 -0.37 -2.04 16 19 C -0.07 -0.58 10.17 -39.32 -0.40 -0.98 16 20 C -0.19 -1.44 10.11 -39.38 -0.40 -1.84 16 21 C 0.11 1.00 11.17 -17.58 -0.20 0.80 16 22 N -0.48 -6.05 9.43 -9.78 -0.09 -6.14 16 23 C -0.10 -1.25 9.42 -39.25 -0.37 -1.62 16 24 C -0.12 -1.66 7.93 -39.63 -0.31 -1.98 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 27 H 0.05 0.86 6.15 -51.93 -0.32 0.54 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.13 1.78 7.54 -52.49 -0.40 1.38 16 35 H 0.14 1.09 6.19 -52.48 -0.33 0.76 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.17 6.18 -52.48 -0.32 0.84 16 40 H 0.12 1.56 8.01 -52.49 -0.42 1.14 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -31.82 334.66 -10.31 -42.14 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.42 Total: -1.36 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -4.39 Total: -17.58 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.52 Total: -44.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.82 -10.31 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140377728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.863 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds