Wall clock time and date at job start Tue Mar 31 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47414 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.46900 * 110.99698 * 66.04130 * 5 4 3 7 7 C 1.50704 * 109.47090 * 193.95416 * 6 5 4 8 8 H 1.07996 * 119.99785 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00035 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99861 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00103 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47284 * 89.99495 * 11 9 7 13 13 H 1.48505 * 109.47202 * 209.99687 * 11 9 7 14 14 H 1.48501 * 109.46928 * 329.99923 * 11 9 7 15 15 C 1.46898 * 110.99984 * 190.00028 * 5 4 3 16 16 C 1.50705 * 109.46736 * 169.99862 * 15 5 4 17 17 N 1.29025 * 124.91168 * 89.99996 * 16 15 5 18 18 C 1.31784 * 117.12258 * 179.97438 * 17 16 15 19 19 C 1.50700 * 122.74936 * 179.72958 * 18 17 16 20 20 C 1.33641 * 114.49889 * 0.02562 * 18 17 16 21 21 C 1.50700 * 126.03597 * 179.97438 * 20 18 17 22 22 S 1.70968 * 124.91810 * 269.99725 * 16 15 5 23 23 H 1.08995 * 109.46668 * 59.99779 * 1 2 3 24 24 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47021 * 300.00262 * 1 2 3 26 26 H 1.09003 * 109.47450 * 239.99627 * 2 1 3 27 27 H 1.08999 * 109.47130 * 120.00393 * 2 1 3 28 28 H 1.08996 * 109.46729 * 59.99990 * 3 2 1 29 29 H 1.08999 * 109.47293 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47021 * 59.99738 * 4 3 2 31 31 H 1.09006 * 109.47102 * 300.00004 * 4 3 2 32 32 H 1.08996 * 109.47984 * 313.95854 * 6 5 4 33 33 H 1.09007 * 109.46547 * 73.95935 * 6 5 4 34 34 H 0.97002 * 119.99536 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47070 * 49.99939 * 15 5 4 36 36 H 1.09001 * 109.46854 * 289.99811 * 15 5 4 37 37 H 1.08994 * 109.47218 * 90.03005 * 19 18 17 38 38 H 1.09007 * 109.46702 * 210.02827 * 19 18 17 39 39 H 1.08999 * 109.46968 * 330.02330 * 19 18 17 40 40 H 1.09004 * 109.47176 * 90.00027 * 21 20 18 41 41 H 1.09000 * 109.46916 * 209.99905 * 21 20 18 42 42 H 1.08999 * 109.47044 * 329.99869 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0598 2.8274 0.0013 6 6 3.7097 3.5090 1.2546 7 6 3.9134 4.9934 1.0931 8 1 4.2671 5.3908 0.1532 9 6 3.6482 5.8442 2.1451 10 7 3.8255 7.1397 2.0039 11 14 3.0371 5.1568 3.7710 12 1 4.1973 4.8416 4.6426 13 1 2.1738 6.1627 4.4405 14 1 2.2543 3.9196 3.5224 15 6 5.5087 2.8736 -0.2363 16 6 5.9337 4.2999 -0.4730 17 7 6.3082 5.1216 0.4487 18 6 6.6488 6.3365 0.0683 19 6 7.0993 7.3981 1.0383 20 6 6.5560 6.5517 -1.2474 21 6 6.8787 7.8398 -1.9599 22 16 5.9895 5.0635 -2.0017 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9287 0.8909 32 1 2.6660 3.3098 1.4974 33 1 4.3466 3.1403 2.0588 34 1 3.6392 7.7382 2.7443 35 1 5.7527 2.2717 -1.1116 36 1 6.0323 2.4781 0.6341 37 1 8.1815 7.3457 1.1575 38 1 6.8231 8.3807 0.6556 39 1 6.6191 7.2359 2.0033 40 1 7.9292 7.8408 -2.2510 41 1 6.2551 7.9290 -2.8495 42 1 6.6852 8.6813 -1.2947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144366908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:45 Heat of formation + Delta-G solvation = 50.567216 kcal Electronic energy + Delta-G solvation = -20901.348721 eV Core-core repulsion = 18008.627142 eV Total energy + Delta-G solvation = -2892.721580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.17480 -37.26738 -34.51406 -32.42864 -32.24500 -29.45033 -28.64086 -28.25189 -25.79149 -23.98466 -22.63075 -21.97817 -20.73491 -19.77541 -17.91421 -17.13352 -16.81136 -15.35856 -14.76138 -14.64042 -14.34193 -14.00754 -13.54805 -13.36478 -12.97213 -12.77948 -12.61733 -12.52624 -12.19643 -12.14236 -12.06091 -11.70011 -11.48036 -11.35644 -11.20429 -11.01514 -10.83659 -10.60668 -10.58032 -10.34574 -10.24008 -9.93166 -9.69855 -9.02963 -8.49448 -8.42609 -8.01131 -7.54338 -7.44173 -5.85878 -3.74332 1.68950 2.32499 2.71850 3.36212 3.42444 3.45099 3.89446 4.55905 4.71753 5.09714 5.15427 5.27753 5.34250 5.46246 5.60163 5.64933 5.70533 5.74794 5.82680 5.92837 5.93081 6.00655 6.03588 6.08370 6.12536 6.16424 6.22203 6.29746 6.35554 6.38101 6.55802 6.69678 6.75355 6.88517 6.97098 7.00105 7.32566 7.68264 7.87293 8.03811 8.76914 8.95724 9.17356 9.75230 11.25423 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.006923 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.436445 B = 4043.577159 C = 5422.761152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.057 3.943 5 N -0.526 5.526 6 C 0.159 3.841 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.862 3.138 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.272 1.272 15 C 0.144 3.856 16 C 0.082 3.918 17 N -0.404 5.404 18 C 0.102 3.898 19 C -0.065 4.065 20 C -0.247 4.247 21 C -0.062 4.062 22 S 0.059 5.941 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.030 0.970 33 H -0.015 1.015 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -7.044 -6.523 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.071 4.071 5 N -0.251 5.251 6 C 0.033 3.967 7 C -0.520 4.520 8 H 0.105 0.895 9 C -0.124 4.124 10 N -0.533 5.533 11 Si 0.691 3.309 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.197 1.197 15 C 0.013 3.987 16 C -0.198 4.198 17 N -0.116 5.116 18 C -0.030 4.030 19 C -0.125 4.125 20 C -0.367 4.367 21 C -0.121 4.121 22 S 0.314 5.686 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.002 0.998 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.654 -7.150 -7.283 10.546 hybrid contribution -0.033 -0.017 2.390 2.390 sum 2.621 -7.168 -4.894 9.066 Atomic orbital electron populations 1.21755 0.96122 1.00954 1.01988 1.21493 0.95676 0.97393 1.01414 1.21628 0.94917 0.95614 1.03314 1.22046 0.95581 0.90024 0.99453 1.62042 1.10712 1.13323 1.39041 1.20322 0.95466 0.95956 0.84911 1.21199 1.41954 0.88193 1.00676 0.89519 1.24686 0.95638 0.94731 0.97391 1.69880 1.50073 1.01963 1.31401 0.87076 0.79054 0.78934 0.85830 1.20724 1.21700 1.19738 1.20323 0.89659 0.88540 1.00177 1.26001 1.03606 1.00031 0.90140 1.66163 1.10163 1.01992 1.33330 1.19871 0.99174 0.92713 0.91261 1.20187 0.98600 0.94545 0.99134 1.25307 1.14034 1.00092 0.97268 1.20060 1.00450 0.92340 0.99288 1.83301 1.64337 1.06024 1.14952 0.92709 0.93251 0.92789 0.92333 0.92516 0.91479 0.91159 0.91828 0.95844 0.95249 0.99774 0.93365 0.90658 0.93064 0.92927 0.91742 0.89836 0.91991 0.92150 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.83 5.17 -26.73 -0.14 -1.97 16 4 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 5 N -0.53 -10.81 4.56 -237.51 -1.08 -11.90 16 6 C 0.16 3.86 3.66 -4.97 -0.02 3.85 16 7 C -0.48 -13.27 6.84 -34.44 -0.24 -13.51 16 8 H 0.09 2.55 4.78 -52.49 -0.25 2.30 16 9 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 11 Si 0.86 21.92 27.47 -169.99 -4.67 17.25 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 15 C 0.14 2.77 5.54 -4.97 -0.03 2.74 16 16 C 0.08 1.74 4.46 -13.45 -0.06 1.68 16 17 N -0.40 -9.52 7.91 -8.06 -0.06 -9.59 16 18 C 0.10 2.23 6.24 -84.22 -0.53 1.71 16 19 C -0.07 -1.30 10.06 36.01 0.36 -0.94 16 20 C -0.25 -4.85 6.59 -35.92 -0.24 -5.09 16 21 C -0.06 -0.96 10.10 36.01 0.36 -0.60 16 22 S 0.06 1.12 22.98 -107.50 -2.47 -1.35 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.19 6.31 -51.93 -0.33 0.87 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.91 7.93 -51.93 -0.41 0.49 16 31 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.03 0.73 5.04 -51.93 -0.26 0.47 16 33 H -0.02 -0.39 7.41 -51.93 -0.38 -0.77 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.20 7.93 -51.93 -0.41 0.78 16 36 H 0.05 0.99 8.01 -51.93 -0.42 0.57 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.19 6.71 -51.92 -0.35 0.84 16 39 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -30.63 341.31 -9.77 -40.41 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.98 Total: -2.51 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.42 Total: -12.14 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.37 Total: -46.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.47 Total: -1.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.63 -9.77 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144366908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.973 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds