Wall clock time and date at job start Tue Mar 31 2020 07:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47414 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.46900 * 110.99698 * 66.04130 * 5 4 3 7 7 C 1.50704 * 109.47090 * 193.95416 * 6 5 4 8 8 H 1.07996 * 119.99785 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00035 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99861 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00103 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47284 * 89.99495 * 11 9 7 13 13 H 1.48505 * 109.47202 * 209.99687 * 11 9 7 14 14 H 1.48501 * 109.46928 * 329.99923 * 11 9 7 15 15 C 1.46898 * 110.99984 * 190.00028 * 5 4 3 16 16 C 1.50705 * 109.46736 * 169.99862 * 15 5 4 17 17 N 1.29025 * 124.91168 * 89.99996 * 16 15 5 18 18 C 1.31784 * 117.12258 * 179.97438 * 17 16 15 19 19 C 1.50700 * 122.74936 * 179.72958 * 18 17 16 20 20 C 1.33641 * 114.49889 * 0.02562 * 18 17 16 21 21 C 1.50700 * 126.03597 * 179.97438 * 20 18 17 22 22 S 1.70968 * 124.91810 * 269.99725 * 16 15 5 23 23 H 1.08995 * 109.46668 * 59.99779 * 1 2 3 24 24 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47021 * 300.00262 * 1 2 3 26 26 H 1.09003 * 109.47450 * 239.99627 * 2 1 3 27 27 H 1.08999 * 109.47130 * 120.00393 * 2 1 3 28 28 H 1.08996 * 109.46729 * 59.99990 * 3 2 1 29 29 H 1.08999 * 109.47293 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47021 * 59.99738 * 4 3 2 31 31 H 1.09006 * 109.47102 * 300.00004 * 4 3 2 32 32 H 1.08996 * 109.47984 * 313.95854 * 6 5 4 33 33 H 1.09007 * 109.46547 * 73.95935 * 6 5 4 34 34 H 0.97002 * 119.99536 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47070 * 49.99939 * 15 5 4 36 36 H 1.09001 * 109.46854 * 289.99811 * 15 5 4 37 37 H 1.08994 * 109.47218 * 90.03005 * 19 18 17 38 38 H 1.09007 * 109.46702 * 210.02827 * 19 18 17 39 39 H 1.08999 * 109.46968 * 330.02330 * 19 18 17 40 40 H 1.09004 * 109.47176 * 90.00027 * 21 20 18 41 41 H 1.09000 * 109.46916 * 209.99905 * 21 20 18 42 42 H 1.08999 * 109.47044 * 329.99869 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0598 2.8274 0.0013 6 6 3.7097 3.5090 1.2546 7 6 3.9134 4.9934 1.0931 8 1 4.2671 5.3908 0.1532 9 6 3.6482 5.8442 2.1451 10 7 3.8255 7.1397 2.0039 11 14 3.0371 5.1568 3.7710 12 1 4.1973 4.8416 4.6426 13 1 2.1738 6.1627 4.4405 14 1 2.2543 3.9196 3.5224 15 6 5.5087 2.8736 -0.2363 16 6 5.9337 4.2999 -0.4730 17 7 6.3082 5.1216 0.4487 18 6 6.6488 6.3365 0.0683 19 6 7.0993 7.3981 1.0383 20 6 6.5560 6.5517 -1.2474 21 6 6.8787 7.8398 -1.9599 22 16 5.9895 5.0635 -2.0017 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9287 0.8909 32 1 2.6660 3.3098 1.4974 33 1 4.3466 3.1403 2.0588 34 1 3.6392 7.7382 2.7443 35 1 5.7527 2.2717 -1.1116 36 1 6.0323 2.4781 0.6341 37 1 8.1815 7.3457 1.1575 38 1 6.8231 8.3807 0.6556 39 1 6.6191 7.2359 2.0033 40 1 7.9292 7.8408 -2.2510 41 1 6.2551 7.9290 -2.8495 42 1 6.6852 8.6813 -1.2947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144366908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:44 Heat of formation + Delta-G solvation = 31.791797 kcal Electronic energy + Delta-G solvation = -20902.162884 eV Core-core repulsion = 18008.627142 eV Total energy + Delta-G solvation = -2893.535743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76964 -38.77413 -35.74107 -34.37465 -33.81386 -30.77153 -30.30475 -29.89492 -27.27517 -25.45167 -24.31797 -23.40044 -22.00523 -21.34394 -19.47240 -19.07274 -18.45840 -16.77058 -16.39907 -16.13306 -15.99842 -15.52547 -15.13902 -14.81496 -14.44466 -14.21067 -14.06303 -13.95189 -13.75044 -13.56145 -13.34038 -13.32191 -13.09880 -13.00169 -12.74929 -12.52121 -12.27279 -12.10959 -11.79552 -11.76034 -11.74540 -11.59970 -11.32574 -11.00863 -10.54444 -10.07572 -9.64082 -9.14207 -9.03213 -8.01745 -5.91582 0.13489 0.81804 1.14502 1.31189 1.34181 1.39609 2.29013 2.44630 3.24971 3.31910 3.60771 4.00378 4.12673 4.19976 4.28828 4.35168 4.41753 4.48946 4.51007 4.62011 4.66571 4.73282 4.79235 4.81903 4.86512 4.87913 5.00210 5.04681 5.10271 5.13058 5.17060 5.23391 5.29584 5.36195 5.44356 5.52127 5.72257 5.75817 6.07869 6.34124 6.73636 6.99823 7.38893 7.59104 9.10472 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.006923 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.436445 B = 4043.577159 C = 5422.761152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.171 3.829 7 C -0.474 4.474 8 H 0.067 0.933 9 C 0.028 3.972 10 N -0.921 5.921 11 Si 0.910 3.090 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.262 1.262 15 C 0.143 3.857 16 C 0.058 3.942 17 N -0.444 5.444 18 C 0.066 3.934 19 C -0.056 4.056 20 C -0.249 4.249 21 C -0.062 4.062 22 S 0.102 5.898 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.025 0.975 33 H -0.030 1.030 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -8.636 -8.106 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.151 4.151 4 C -0.071 4.071 5 N -0.262 5.262 6 C 0.044 3.956 7 C -0.514 4.514 8 H 0.085 0.915 9 C -0.169 4.169 10 N -0.563 5.563 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.187 1.187 15 C 0.012 3.988 16 C -0.221 4.221 17 N -0.158 5.158 18 C -0.066 4.066 19 C -0.115 4.115 20 C -0.370 4.370 21 C -0.121 4.121 22 S 0.357 5.643 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.042 0.958 33 H -0.012 1.012 34 H 0.062 0.938 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.739 -8.770 -8.873 12.773 hybrid contribution -0.013 0.473 2.755 2.795 sum 2.726 -8.297 -6.118 10.663 Atomic orbital electron populations 1.21760 0.95482 1.02108 1.01505 1.21447 0.96213 0.95042 1.02554 1.21597 0.94449 0.97627 1.01473 1.22203 0.95966 0.87860 1.01074 1.61958 1.11811 1.15748 1.36639 1.20023 0.94732 0.94429 0.86376 1.21376 1.40404 0.89903 0.99704 0.91517 1.25264 0.96532 0.95094 1.00030 1.69995 1.51651 1.02780 1.31897 0.86295 0.78418 0.78680 0.82771 1.21248 1.21679 1.18662 1.20498 0.88659 0.88099 1.01557 1.26427 1.03598 1.00895 0.91210 1.66124 1.11462 1.03082 1.35104 1.20153 1.00985 0.92867 0.92578 1.20109 0.99856 0.94664 0.96895 1.25886 1.12212 1.01817 0.97079 1.20208 1.02521 0.90126 0.99244 1.82981 1.63266 1.05088 1.12984 0.92675 0.91269 0.93873 0.90399 0.92084 0.94321 0.91968 0.88682 0.95490 0.95756 1.01248 0.93793 0.86939 0.93670 0.90356 0.90904 0.93624 0.89047 0.90948 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.11 -2.53 5.93 30.59 0.18 -2.35 16 3 C -0.11 -3.38 5.17 30.59 0.16 -3.22 16 4 C 0.06 1.73 4.96 86.30 0.43 2.16 16 5 N -0.54 -21.45 4.56 -905.35 -4.13 -25.58 16 6 C 0.17 8.33 3.66 85.56 0.31 8.64 16 7 C -0.47 -26.58 6.84 25.60 0.18 -26.41 16 8 H 0.07 3.98 4.78 -2.91 -0.01 3.97 16 9 C 0.03 1.64 5.47 84.65 0.46 2.10 16 10 N -0.92 -55.30 13.96 21.45 0.30 -55.00 16 11 Si 0.91 46.06 27.47 68.60 1.88 47.94 16 12 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 13 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 14 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 15 C 0.14 5.29 5.54 85.56 0.47 5.76 16 16 C 0.06 2.43 4.46 88.52 0.40 2.83 16 17 N -0.44 -21.20 7.91 -179.40 -1.42 -22.62 16 18 C 0.07 2.90 6.24 41.52 0.26 3.15 16 19 C -0.06 -2.27 10.06 71.24 0.72 -1.55 16 20 C -0.25 -9.54 6.59 24.64 0.16 -9.38 16 21 C -0.06 -1.78 10.10 71.24 0.72 -1.06 16 22 S 0.10 3.71 22.98 -56.49 -1.30 2.41 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.36 6.31 -2.39 -0.02 1.34 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.35 7.93 -2.39 -0.02 2.33 16 31 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 32 H 0.02 1.22 5.04 -2.39 -0.01 1.20 16 33 H -0.03 -1.53 7.41 -2.38 -0.02 -1.55 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.11 3.24 7.93 -2.39 -0.02 3.22 16 36 H 0.05 1.72 8.01 -2.39 -0.02 1.70 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.73 6.71 -2.38 -0.02 2.71 16 39 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.15 6.75 -2.39 -0.02 2.14 16 Total: -1.00 -67.41 341.31 1.43 -65.98 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.93 Total: 8.60 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 5.16 Total: -21.73 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.25 Total: -103.20 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.30 Total: 2.41 kcal Total: -67.41 1.43 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144366908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.770 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds