Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47445 * 2 1 4 4 N 1.46898 * 109.47321 * 182.30892 * 3 2 1 5 5 C 1.46900 * 111.00225 * 298.51830 * 4 3 2 6 6 C 1.50702 * 109.46768 * 288.69182 * 5 4 3 7 7 H 1.07998 * 119.99920 * 0.25302 * 6 5 4 8 8 C 1.37878 * 119.99657 * 180.25346 * 6 5 4 9 9 N 1.31520 * 119.99812 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00100 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47195 * 90.00129 * 10 8 6 12 12 H 1.48504 * 109.47148 * 209.99907 * 10 8 6 13 13 H 1.48496 * 109.47063 * 329.99851 * 10 8 6 14 14 C 1.46905 * 110.99621 * 62.46795 * 4 3 2 15 15 C 1.50697 * 109.46999 * 66.04954 * 14 4 3 16 16 C 1.38065 * 120.34608 * 269.97640 * 15 14 4 17 17 N 1.31963 * 120.88187 * 179.76855 * 16 15 14 18 18 C 1.32223 * 121.67028 * 0.52009 * 17 16 15 19 19 O 1.35724 * 119.70168 * 179.75598 * 18 17 16 20 20 C 1.42907 * 116.99485 * 359.72610 * 19 18 17 21 21 C 1.39090 * 120.60415 * 359.48033 * 18 17 16 22 22 F 1.35100 * 120.46719 * 180.23189 * 21 18 17 23 23 C 1.38576 * 119.07239 * 0.25435 * 21 18 17 24 24 H 1.08998 * 109.46685 * 59.99714 * 1 2 3 25 25 H 1.08997 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47206 * 300.00341 * 1 2 3 27 27 H 1.09002 * 109.47206 * 239.99659 * 2 1 3 28 28 H 1.09008 * 109.46766 * 120.00264 * 2 1 3 29 29 H 1.09001 * 109.47092 * 62.30960 * 3 2 1 30 30 H 1.08998 * 109.46881 * 302.31408 * 3 2 1 31 31 H 1.09000 * 109.46824 * 48.68969 * 5 4 3 32 32 H 1.08992 * 109.47144 * 168.69136 * 5 4 3 33 33 H 0.97004 * 120.00059 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47158 * 306.04568 * 14 4 3 35 35 H 1.09000 * 109.47138 * 186.04386 * 14 4 3 36 36 H 1.08006 * 119.55796 * 0.02562 * 16 15 14 37 37 H 1.09001 * 109.47144 * 60.00210 * 20 19 18 38 38 H 1.09001 * 109.46968 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47335 * 299.99685 * 20 19 18 40 40 H 1.08000 * 120.76721 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5080 1.4428 -0.0558 5 6 4.0797 0.7720 1.1194 6 6 3.8805 1.6366 2.3376 7 1 3.3758 2.5872 2.2484 8 6 4.3427 1.2140 3.5659 9 7 4.1694 1.9687 4.6290 10 14 5.2152 -0.4305 3.7202 11 1 6.6734 -0.2385 3.5155 12 1 4.9752 -0.9931 5.0735 13 1 4.6904 -1.3674 2.6945 14 6 3.9876 0.8253 -1.2995 15 6 3.5841 1.6804 -2.4729 16 6 2.3768 1.4681 -3.1083 17 7 2.0108 2.2135 -4.1339 18 6 2.7827 3.1808 -4.5995 19 8 2.3688 3.9199 -5.6599 20 6 1.0963 3.5922 -6.2218 21 6 4.0125 3.4516 -4.0089 22 9 4.7969 4.4437 -4.4840 23 6 4.4223 2.6893 -2.9267 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7110 1.9442 0.9100 30 1 1.6433 1.9681 -0.8685 31 1 3.5821 -0.1862 1.2687 32 1 5.1454 0.6073 0.9611 33 1 4.4942 1.6713 5.4932 34 1 3.5492 -0.1670 -1.4051 35 1 5.0739 0.7411 -1.2680 36 1 1.7213 0.6841 -2.7586 37 1 0.3228 3.7100 -5.4629 38 1 0.8870 4.2573 -7.0596 39 1 1.1083 2.5598 -6.5712 40 1 5.3721 2.8757 -2.4476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144464045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -41.212110 kcal Electronic energy + Delta-G solvation = -22396.464340 eV Core-core repulsion = 18933.549734 eV Total energy + Delta-G solvation = -3462.914606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.83964 -40.67678 -38.58613 -37.22828 -33.08975 -32.83534 -31.79250 -30.89031 -28.18238 -27.27373 -26.29817 -24.02667 -23.59356 -22.20115 -21.78287 -19.33796 -18.56659 -17.83146 -17.03192 -16.65426 -16.50317 -15.37049 -15.16259 -15.11002 -15.02469 -14.44938 -14.31980 -13.96573 -13.62111 -13.18261 -13.09865 -12.98379 -12.57007 -12.46662 -11.96236 -11.89255 -11.52441 -11.42381 -11.31834 -11.13803 -10.95576 -10.64094 -10.49426 -10.13656 -9.93448 -9.78999 -9.66376 -9.34094 -8.59596 -8.37942 -7.39761 -6.07657 -4.04905 0.89766 1.08399 2.83210 3.24837 3.32581 3.33213 3.51554 4.02136 4.23423 4.38270 4.58736 4.81376 4.89454 5.05025 5.14172 5.15584 5.24405 5.32078 5.35415 5.42878 5.47060 5.53896 5.68261 5.75367 5.88125 5.95099 6.10416 6.21673 6.25903 6.32628 6.38553 6.45612 6.73417 6.86946 6.96175 7.03322 7.54683 7.60976 7.80563 7.93967 8.61566 9.02166 9.53568 11.05566 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.004357 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.998546 B = 6425.181329 C = 7126.447007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.166 4.166 3 C 0.061 3.939 4 N -0.519 5.519 5 C 0.158 3.842 6 C -0.506 4.506 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.089 3.911 15 C -0.119 4.119 16 C 0.132 3.868 17 N -0.514 5.514 18 C 0.284 3.716 19 O -0.305 6.305 20 C 0.041 3.959 21 C 0.031 3.969 22 F -0.127 7.127 23 C -0.056 4.056 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.056 0.944 31 H -0.001 1.001 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -2.373 -18.364 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.068 4.068 4 N -0.242 5.242 5 C 0.032 3.968 6 C -0.544 4.544 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.040 4.040 15 C -0.122 4.122 16 C -0.024 4.024 17 N -0.237 5.237 18 C 0.103 3.897 19 O -0.212 6.212 20 C -0.054 4.054 21 C 0.009 3.991 22 F -0.105 7.105 23 C -0.082 4.082 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.181 0.819 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.045 -1.753 -18.719 19.466 hybrid contribution 0.904 -1.471 0.584 1.823 sum -4.141 -3.224 -18.134 18.878 Atomic orbital electron populations 1.21663 0.96022 1.00911 1.01656 1.22217 0.96056 1.00230 1.01991 1.22157 0.87735 0.94512 1.02360 1.62252 1.07033 1.54180 1.00695 1.20278 0.94199 0.93709 0.88585 1.20987 1.37770 1.05923 0.89755 0.90189 1.24887 0.95806 0.96807 0.95779 1.69892 1.47055 1.37471 0.99449 0.86908 0.80566 0.84964 0.77567 1.20186 1.21247 1.19274 1.21028 1.00854 0.93947 0.88169 1.20687 0.94989 0.98039 0.98468 1.22429 0.94094 0.96372 0.89493 1.67404 1.33511 1.07043 1.15727 1.19813 0.89758 0.90836 0.89244 1.86284 1.38077 1.54602 1.42216 1.22871 0.82653 1.01737 0.98142 1.17611 0.89933 0.92937 0.98631 1.91510 1.72964 1.58547 1.87521 1.21463 1.01418 0.92752 0.92586 0.93261 0.93423 0.92452 0.92877 0.90787 0.89449 0.92531 0.98303 0.95979 0.92665 0.93603 0.89921 0.81929 0.92114 0.88615 0.92259 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.17 -2.52 5.16 -26.73 -0.14 -2.65 16 3 C 0.06 1.05 4.84 -3.83 -0.02 1.04 16 4 N -0.52 -9.82 4.65 -237.52 -1.11 -10.93 16 5 C 0.16 3.53 3.65 -4.97 -0.02 3.51 16 6 C -0.51 -13.75 9.12 -34.44 -0.31 -14.06 16 7 H 0.08 2.41 7.70 -52.49 -0.40 2.00 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 10 Si 0.87 20.71 27.46 -169.99 -4.67 16.05 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.04 6.55 56.52 0.37 -5.67 16 14 C 0.09 1.32 4.93 -4.97 -0.02 1.30 16 15 C -0.12 -1.64 4.90 -104.48 -0.51 -2.15 16 16 C 0.13 1.72 9.09 -17.56 -0.16 1.56 16 17 N -0.51 -7.04 9.22 -13.27 -0.12 -7.16 16 18 C 0.28 4.06 7.49 -17.07 -0.13 3.93 16 19 O -0.30 -4.06 10.35 -18.88 -0.20 -4.25 16 20 C 0.04 0.39 10.38 101.05 1.05 1.44 16 21 C 0.03 0.45 7.35 -39.14 -0.29 0.16 16 22 F -0.13 -1.88 17.13 2.25 0.04 -1.84 16 23 C -0.06 -0.76 9.84 -39.25 -0.39 -1.15 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.71 5.59 -51.93 -0.29 0.42 16 28 H 0.07 1.31 6.33 -51.92 -0.33 0.98 16 29 H 0.09 1.77 7.19 -51.93 -0.37 1.39 16 30 H 0.06 0.90 6.00 -51.93 -0.31 0.59 16 31 H 0.00 -0.01 4.96 -51.93 -0.26 -0.27 16 32 H 0.02 0.50 7.24 -51.93 -0.38 0.12 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.63 5.98 -51.93 -0.31 0.32 16 35 H 0.08 1.19 7.82 -51.93 -0.41 0.78 16 36 H 0.16 1.84 7.24 -52.48 -0.38 1.46 16 37 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -30.25 326.86 -6.58 -36.82 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.56 Total: -0.64 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.67 Total: -6.76 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.45 Total: -44.30 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.25 -6.58 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144464045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.387 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds