Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47445 * 2 1 4 4 N 1.46898 * 109.47321 * 182.30892 * 3 2 1 5 5 C 1.46900 * 111.00225 * 298.51830 * 4 3 2 6 6 C 1.50702 * 109.46768 * 288.69182 * 5 4 3 7 7 H 1.07998 * 119.99920 * 0.25302 * 6 5 4 8 8 C 1.37878 * 119.99657 * 180.25346 * 6 5 4 9 9 N 1.31520 * 119.99812 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00100 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47195 * 90.00129 * 10 8 6 12 12 H 1.48504 * 109.47148 * 209.99907 * 10 8 6 13 13 H 1.48496 * 109.47063 * 329.99851 * 10 8 6 14 14 C 1.46905 * 110.99621 * 62.46795 * 4 3 2 15 15 C 1.50697 * 109.46999 * 66.04954 * 14 4 3 16 16 C 1.38065 * 120.34608 * 269.97640 * 15 14 4 17 17 N 1.31963 * 120.88187 * 179.76855 * 16 15 14 18 18 C 1.32223 * 121.67028 * 0.52009 * 17 16 15 19 19 O 1.35724 * 119.70168 * 179.75598 * 18 17 16 20 20 C 1.42907 * 116.99485 * 359.72610 * 19 18 17 21 21 C 1.39090 * 120.60415 * 359.48033 * 18 17 16 22 22 F 1.35100 * 120.46719 * 180.23189 * 21 18 17 23 23 C 1.38576 * 119.07239 * 0.25435 * 21 18 17 24 24 H 1.08998 * 109.46685 * 59.99714 * 1 2 3 25 25 H 1.08997 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47206 * 300.00341 * 1 2 3 27 27 H 1.09002 * 109.47206 * 239.99659 * 2 1 3 28 28 H 1.09008 * 109.46766 * 120.00264 * 2 1 3 29 29 H 1.09001 * 109.47092 * 62.30960 * 3 2 1 30 30 H 1.08998 * 109.46881 * 302.31408 * 3 2 1 31 31 H 1.09000 * 109.46824 * 48.68969 * 5 4 3 32 32 H 1.08992 * 109.47144 * 168.69136 * 5 4 3 33 33 H 0.97004 * 120.00059 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47158 * 306.04568 * 14 4 3 35 35 H 1.09000 * 109.47138 * 186.04386 * 14 4 3 36 36 H 1.08006 * 119.55796 * 0.02562 * 16 15 14 37 37 H 1.09001 * 109.47144 * 60.00210 * 20 19 18 38 38 H 1.09001 * 109.46968 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47335 * 299.99685 * 20 19 18 40 40 H 1.08000 * 120.76721 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5080 1.4428 -0.0558 5 6 4.0797 0.7720 1.1194 6 6 3.8805 1.6366 2.3376 7 1 3.3758 2.5872 2.2484 8 6 4.3427 1.2140 3.5659 9 7 4.1694 1.9687 4.6290 10 14 5.2152 -0.4305 3.7202 11 1 6.6734 -0.2385 3.5155 12 1 4.9752 -0.9931 5.0735 13 1 4.6904 -1.3674 2.6945 14 6 3.9876 0.8253 -1.2995 15 6 3.5841 1.6804 -2.4729 16 6 2.3768 1.4681 -3.1083 17 7 2.0108 2.2135 -4.1339 18 6 2.7827 3.1808 -4.5995 19 8 2.3688 3.9199 -5.6599 20 6 1.0963 3.5922 -6.2218 21 6 4.0125 3.4516 -4.0089 22 9 4.7969 4.4437 -4.4840 23 6 4.4223 2.6893 -2.9267 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7110 1.9442 0.9100 30 1 1.6433 1.9681 -0.8685 31 1 3.5821 -0.1862 1.2687 32 1 5.1454 0.6073 0.9611 33 1 4.4942 1.6713 5.4932 34 1 3.5492 -0.1670 -1.4051 35 1 5.0739 0.7411 -1.2680 36 1 1.7213 0.6841 -2.7586 37 1 0.3228 3.7100 -5.4629 38 1 0.8870 4.2573 -7.0596 39 1 1.1083 2.5598 -6.5712 40 1 5.3721 2.8757 -2.4476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144464045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = -62.838257 kcal Electronic energy + Delta-G solvation = -22397.402120 eV Core-core repulsion = 18933.549734 eV Total energy + Delta-G solvation = -3463.852386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95185 -41.72620 -39.73506 -38.47384 -34.80485 -34.20733 -33.08457 -32.12353 -29.67204 -28.41958 -27.45680 -25.46081 -24.63296 -23.56789 -23.12902 -20.79445 -19.55366 -18.88661 -18.86202 -17.98216 -17.54211 -16.75851 -16.54529 -16.18398 -16.15405 -15.94991 -15.47010 -15.33071 -14.87214 -14.53296 -14.30364 -14.08902 -14.07049 -13.69339 -13.35815 -12.95509 -12.77968 -12.66593 -12.63983 -12.38180 -12.25970 -12.15270 -11.98994 -11.83325 -11.43370 -11.32156 -10.87753 -10.80548 -10.70785 -9.45483 -8.84232 -8.22825 -6.25143 -0.16124 0.01185 1.38913 1.39953 1.49994 1.89553 2.38479 2.43784 2.99372 3.11404 3.21245 3.38570 3.57831 3.86824 4.01261 4.12752 4.16527 4.35819 4.39309 4.43241 4.45932 4.52073 4.59552 4.71011 4.74148 4.78273 4.87694 4.97321 5.06197 5.14411 5.17368 5.29402 5.30718 5.41280 5.51516 5.62547 6.02379 6.06304 6.41465 6.56816 6.70046 6.81776 7.37889 8.94279 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.004357 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.998546 B = 6425.181329 C = 7126.447007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.159 4.159 3 C 0.066 3.934 4 N -0.540 5.540 5 C 0.169 3.831 6 C -0.508 4.508 7 H 0.031 0.969 8 C 0.005 3.995 9 N -0.953 5.953 10 Si 0.945 3.055 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.243 1.243 14 C 0.093 3.907 15 C -0.126 4.126 16 C 0.140 3.860 17 N -0.517 5.517 18 C 0.280 3.720 19 O -0.319 6.319 20 C 0.036 3.964 21 C 0.013 3.987 22 F -0.134 7.134 23 C -0.054 4.054 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.007 0.993 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.186 0.814 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -4.623 -20.490 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C -0.062 4.062 4 N -0.263 5.263 5 C 0.042 3.958 6 C -0.546 4.546 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.769 3.231 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.166 1.166 14 C -0.035 4.035 15 C -0.129 4.129 16 C -0.016 4.016 17 N -0.239 5.239 18 C 0.100 3.900 19 O -0.226 6.226 20 C -0.059 4.059 21 C -0.009 4.009 22 F -0.113 7.113 23 C -0.081 4.081 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.024 0.976 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.202 0.798 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.235 -3.998 -20.892 21.906 hybrid contribution 0.867 -0.637 1.162 1.583 sum -4.368 -4.635 -19.730 20.733 Atomic orbital electron populations 1.21640 0.94314 1.02149 1.01806 1.22130 0.97563 0.98145 1.01931 1.22041 0.87155 0.96061 1.00947 1.62057 1.07881 1.55040 1.01285 1.20010 0.94810 0.92933 0.88059 1.21259 1.36442 1.04769 0.92175 0.95066 1.25849 0.96862 1.01199 0.95240 1.70072 1.49088 1.40076 1.00212 0.85742 0.79435 0.79962 0.77960 1.19215 1.21418 1.16615 1.21040 1.01434 0.94772 0.86258 1.20589 0.95547 0.98281 0.98466 1.22766 0.93840 0.96232 0.88772 1.67487 1.33355 1.07093 1.16009 1.19987 0.89749 0.90866 0.89424 1.86278 1.39759 1.54674 1.41895 1.23149 0.81005 1.02922 0.98792 1.17760 0.90405 0.93394 0.99349 1.91486 1.73182 1.58901 1.87686 1.21607 1.01798 0.92437 0.92234 0.91431 0.91616 0.94067 0.90146 0.93407 0.93721 0.90856 0.97555 0.95236 0.92683 0.91461 0.89196 0.79756 0.92228 0.85802 0.91728 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.16 -4.46 5.16 30.59 0.16 -4.31 16 3 C 0.07 2.25 4.84 86.30 0.42 2.67 16 4 N -0.54 -19.88 4.65 -905.39 -4.21 -24.10 16 5 C 0.17 7.38 3.65 85.56 0.31 7.69 16 6 C -0.51 -28.39 9.12 25.60 0.23 -28.16 16 7 H 0.03 1.99 7.70 -2.91 -0.02 1.97 16 8 C 0.01 0.29 5.47 84.65 0.46 0.75 16 9 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 10 Si 0.95 42.45 27.46 68.60 1.88 44.34 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.24 -9.83 6.55 99.48 0.65 -9.18 16 14 C 0.09 2.51 4.93 85.55 0.42 2.93 16 15 C -0.13 -3.17 4.90 -19.77 -0.10 -3.27 16 16 C 0.14 3.23 9.09 84.63 0.77 3.99 16 17 N -0.52 -12.94 9.22 -308.76 -2.85 -15.78 16 18 C 0.28 7.59 7.49 84.84 0.64 8.22 16 19 O -0.32 -8.03 10.35 -90.46 -0.94 -8.97 16 20 C 0.04 0.59 10.38 113.37 1.18 1.77 16 21 C 0.01 0.36 7.35 22.56 0.17 0.53 16 22 F -0.13 -3.91 17.13 44.97 0.77 -3.14 16 23 C -0.05 -1.42 9.84 22.48 0.22 -1.20 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.82 5.59 -2.39 -0.01 1.81 16 28 H 0.05 1.61 6.33 -2.38 -0.02 1.59 16 29 H 0.04 1.88 7.19 -2.39 -0.02 1.87 16 30 H 0.07 2.22 6.00 -2.39 -0.01 2.21 16 31 H 0.01 0.29 4.96 -2.39 -0.01 0.28 16 32 H 0.03 1.26 7.24 -2.39 -0.02 1.24 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.07 1.56 5.98 -2.39 -0.01 1.55 16 35 H 0.09 2.32 7.82 -2.39 -0.02 2.30 16 36 H 0.19 3.38 7.24 -2.91 -0.02 3.36 16 37 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 40 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -67.71 326.86 1.54 -66.17 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.99 Total: 11.39 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 5.59 Total: -10.97 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -6.76 Total: -98.81 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.94 Total: -8.97 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.77 Total: -3.14 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Total: -67.71 1.54 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144464045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.328 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds