Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46856 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00231 * 269.99946 * 5 4 3 7 7 H 1.08001 * 119.99698 * 320.65624 * 6 5 4 8 8 C 1.38811 * 120.00411 * 140.65218 * 6 5 4 9 9 N 1.31617 * 119.99712 * 337.50520 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 157.49959 * 8 6 5 11 11 H 1.48500 * 109.46857 * 60.00066 * 10 8 6 12 12 H 1.48497 * 109.46904 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46789 * 300.00381 * 10 8 6 14 14 C 1.46501 * 119.99982 * 90.00084 * 5 4 3 15 15 C 1.50694 * 109.47276 * 83.87186 * 14 5 4 16 16 C 1.38065 * 120.34462 * 264.40942 * 15 14 5 17 17 N 1.31963 * 120.88324 * 179.76084 * 16 15 14 18 18 C 1.32225 * 121.66739 * 0.52880 * 17 16 15 19 19 O 1.35727 * 119.69828 * 179.74854 * 18 17 16 20 20 C 1.42900 * 116.99945 * 359.72578 * 19 18 17 21 21 C 1.39088 * 120.60438 * 359.47588 * 18 17 16 22 22 F 1.35105 * 120.46194 * 180.23563 * 21 18 17 23 23 C 1.38570 * 119.07495 * 0.24975 * 21 18 17 24 24 H 1.08993 * 109.46625 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47176 * 300.00393 * 1 2 3 26 26 H 1.08998 * 109.47050 * 60.00521 * 1 2 3 27 27 H 1.08997 * 109.47219 * 240.00158 * 2 1 3 28 28 H 1.08998 * 109.47050 * 119.99479 * 2 1 3 29 29 H 1.08996 * 109.47500 * 59.99805 * 3 2 1 30 30 H 1.09006 * 109.47116 * 299.99542 * 3 2 1 31 31 H 1.08997 * 109.47219 * 60.00158 * 4 3 2 32 32 H 1.08998 * 109.47050 * 299.99479 * 4 3 2 33 33 H 0.97003 * 119.99657 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46977 * 323.86596 * 14 5 4 35 35 H 1.09000 * 109.46811 * 203.87136 * 14 5 4 36 36 H 1.08006 * 119.55690 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.47139 * 59.99595 * 20 19 18 38 38 H 1.08997 * 109.47502 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46962 * 300.00237 * 20 19 18 40 40 H 1.08000 * 120.77234 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2870 3.4687 -1.1862 7 1 4.7277 2.9345 -2.0150 8 6 3.9525 4.8089 -1.3234 9 7 3.0465 5.3452 -0.5336 10 14 4.7883 5.8512 -2.6290 11 1 4.5178 5.2747 -3.9705 12 1 4.2589 7.2373 -2.5694 13 1 6.2529 5.8702 -2.3845 14 6 4.3019 3.5151 1.2685 15 6 5.6735 3.1576 1.7801 16 6 5.8316 2.1398 2.6995 17 7 7.0281 1.8147 3.1511 18 6 8.1167 2.4514 2.7536 19 8 9.3271 2.0872 3.2480 20 6 9.3459 1.0164 4.1941 21 6 8.0334 3.4873 1.8292 22 9 9.1480 4.1328 1.4214 23 6 6.7911 3.8482 1.3324 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9338 0.9286 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 2.8130 6.2818 -0.6292 34 1 3.5513 3.2111 1.9980 35 1 4.2417 4.5922 1.1125 36 1 4.9647 1.5996 3.0505 37 1 8.9349 0.1178 3.7339 38 1 10.3723 0.8266 4.5078 39 1 8.7446 1.2877 5.0618 40 1 6.6946 4.6488 0.6139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144466069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -42.813477 kcal Electronic energy + Delta-G solvation = -22407.184575 eV Core-core repulsion = 18944.200528 eV Total energy + Delta-G solvation = -3462.984046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.46439 -40.15061 -37.89393 -36.24187 -34.12150 -32.09369 -31.37701 -30.40743 -28.03742 -27.31504 -25.51199 -23.96540 -23.12311 -22.01371 -20.83366 -19.95034 -18.19495 -17.33259 -17.07186 -16.24236 -16.10808 -14.90229 -14.82018 -14.80200 -14.75018 -14.16840 -13.96894 -13.62282 -13.43486 -13.01937 -12.73586 -12.60190 -12.27219 -12.07458 -11.90533 -11.66205 -11.40192 -10.99941 -10.94210 -10.83524 -10.65227 -10.56110 -10.38270 -10.20669 -10.01080 -9.70085 -9.39749 -9.20077 -8.59115 -7.92600 -6.71728 -5.96705 -3.49507 1.35833 1.58825 3.19027 3.29575 3.36538 3.39590 4.00029 4.38903 4.45362 4.67127 5.12197 5.22238 5.29184 5.35781 5.36664 5.44747 5.45466 5.59105 5.64817 5.69816 5.76853 5.95213 6.03149 6.20168 6.28455 6.34120 6.36959 6.42630 6.45837 6.61109 6.68292 6.81528 6.93251 7.05406 7.23341 7.36407 7.43350 7.71966 8.05477 8.39419 9.03356 9.64600 10.25240 11.05624 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.006240 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.192557 B = 4486.082555 C = 6381.804239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.148 3.852 5 N -0.574 5.574 6 C -0.264 4.264 7 H 0.060 0.940 8 C 0.020 3.980 9 N -0.878 5.878 10 Si 0.890 3.110 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.190 3.810 15 C -0.129 4.129 16 C 0.117 3.883 17 N -0.518 5.518 18 C 0.266 3.734 19 O -0.310 6.310 20 C 0.044 3.956 21 C 0.028 3.972 22 F -0.133 7.133 23 C -0.059 4.059 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -7.027 6.940 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.171 4.171 4 C 0.022 3.978 5 N -0.292 5.292 6 C -0.394 4.394 7 H 0.078 0.922 8 C -0.182 4.182 9 N -0.518 5.518 10 Si 0.718 3.282 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.206 1.206 14 C 0.062 3.938 15 C -0.134 4.134 16 C -0.039 4.039 17 N -0.240 5.240 18 C 0.086 3.914 19 O -0.217 6.217 20 C -0.052 4.052 21 C 0.006 3.994 22 F -0.112 7.112 23 C -0.086 4.086 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.176 0.824 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.786 -7.410 7.456 11.173 hybrid contribution 0.406 1.164 -1.243 1.751 sum 4.192 -6.246 6.214 9.757 Atomic orbital electron populations 1.21755 0.96785 1.00384 1.01689 1.21535 0.95118 0.98640 1.00864 1.22122 0.98809 0.93915 1.02301 1.20946 0.91588 0.86973 0.98254 1.43736 1.73516 1.10430 1.01537 1.18973 1.35351 0.93575 0.91512 0.92248 1.25205 0.95966 0.99298 0.97756 1.70049 1.28130 1.13188 1.40438 0.86587 0.79945 0.79585 0.82072 1.20487 1.21440 1.20587 1.19802 0.86036 1.00967 0.86959 1.22165 1.00374 0.95608 0.95273 1.22359 0.92736 0.94807 0.93996 1.67293 0.98883 1.29267 1.28607 1.19658 0.85805 0.92456 0.93522 1.86250 1.24663 1.52552 1.58277 1.22778 1.02365 0.88670 0.91350 1.17736 0.84173 0.96406 1.01076 1.91472 1.50262 1.80126 1.89329 1.21517 0.89090 1.00106 0.97884 0.93752 0.93090 0.92940 0.92762 0.92965 0.92942 0.91720 0.93988 0.94933 0.93240 0.93934 0.88312 0.82432 0.92472 0.89036 0.92502 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.96 16 3 C -0.13 -2.41 5.54 -26.73 -0.15 -2.55 16 4 C 0.15 2.89 5.68 -4.04 -0.02 2.86 16 5 N -0.57 -12.89 2.40 -174.61 -0.42 -13.31 16 6 C -0.26 -6.66 9.42 -15.06 -0.14 -6.80 16 7 H 0.06 1.54 7.92 -52.49 -0.42 1.12 16 8 C 0.02 0.50 4.84 -17.43 -0.08 0.42 16 9 N -0.88 -23.25 11.78 55.49 0.65 -22.59 16 10 Si 0.89 20.37 29.61 -169.99 -5.03 15.33 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.19 3.95 5.38 -5.20 -0.03 3.92 16 15 C -0.13 -2.41 5.47 -104.48 -0.57 -2.98 16 16 C 0.12 1.97 10.77 -17.56 -0.19 1.78 16 17 N -0.52 -8.90 9.22 -13.27 -0.12 -9.03 16 18 C 0.27 4.77 7.50 -17.07 -0.13 4.64 16 19 O -0.31 -5.08 10.35 -18.89 -0.20 -5.27 16 20 C 0.04 0.52 10.38 101.05 1.05 1.57 16 21 C 0.03 0.53 7.35 -39.14 -0.29 0.24 16 22 F -0.13 -2.51 17.13 2.25 0.04 -2.47 16 23 C -0.06 -1.13 9.86 -39.25 -0.39 -1.52 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.04 0.83 8.04 -51.93 -0.42 0.42 16 32 H 0.03 0.57 8.02 -51.93 -0.42 0.16 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.10 2.33 5.78 -51.93 -0.30 2.03 16 36 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.66 8.11 -51.93 -0.42 0.23 16 40 H 0.15 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -27.08 343.41 -6.80 -33.89 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.17 Total: 0.27 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.73 Total: -1.99 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.11 Total: -44.93 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.08 -6.80 -33.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144466069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds