Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46856 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00231 * 269.99946 * 5 4 3 7 7 H 1.08001 * 119.99698 * 320.65624 * 6 5 4 8 8 C 1.38811 * 120.00411 * 140.65218 * 6 5 4 9 9 N 1.31617 * 119.99712 * 337.50520 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 157.49959 * 8 6 5 11 11 H 1.48500 * 109.46857 * 60.00066 * 10 8 6 12 12 H 1.48497 * 109.46904 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46789 * 300.00381 * 10 8 6 14 14 C 1.46501 * 119.99982 * 90.00084 * 5 4 3 15 15 C 1.50694 * 109.47276 * 83.87186 * 14 5 4 16 16 C 1.38065 * 120.34462 * 264.40942 * 15 14 5 17 17 N 1.31963 * 120.88324 * 179.76084 * 16 15 14 18 18 C 1.32225 * 121.66739 * 0.52880 * 17 16 15 19 19 O 1.35727 * 119.69828 * 179.74854 * 18 17 16 20 20 C 1.42900 * 116.99945 * 359.72578 * 19 18 17 21 21 C 1.39088 * 120.60438 * 359.47588 * 18 17 16 22 22 F 1.35105 * 120.46194 * 180.23563 * 21 18 17 23 23 C 1.38570 * 119.07495 * 0.24975 * 21 18 17 24 24 H 1.08993 * 109.46625 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47176 * 300.00393 * 1 2 3 26 26 H 1.08998 * 109.47050 * 60.00521 * 1 2 3 27 27 H 1.08997 * 109.47219 * 240.00158 * 2 1 3 28 28 H 1.08998 * 109.47050 * 119.99479 * 2 1 3 29 29 H 1.08996 * 109.47500 * 59.99805 * 3 2 1 30 30 H 1.09006 * 109.47116 * 299.99542 * 3 2 1 31 31 H 1.08997 * 109.47219 * 60.00158 * 4 3 2 32 32 H 1.08998 * 109.47050 * 299.99479 * 4 3 2 33 33 H 0.97003 * 119.99657 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46977 * 323.86596 * 14 5 4 35 35 H 1.09000 * 109.46811 * 203.87136 * 14 5 4 36 36 H 1.08006 * 119.55690 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.47139 * 59.99595 * 20 19 18 38 38 H 1.08997 * 109.47502 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46962 * 300.00237 * 20 19 18 40 40 H 1.08000 * 120.77234 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2870 3.4687 -1.1862 7 1 4.7277 2.9345 -2.0150 8 6 3.9525 4.8089 -1.3234 9 7 3.0465 5.3452 -0.5336 10 14 4.7883 5.8512 -2.6290 11 1 4.5178 5.2747 -3.9705 12 1 4.2589 7.2373 -2.5694 13 1 6.2529 5.8702 -2.3845 14 6 4.3019 3.5151 1.2685 15 6 5.6735 3.1576 1.7801 16 6 5.8316 2.1398 2.6995 17 7 7.0281 1.8147 3.1511 18 6 8.1167 2.4514 2.7536 19 8 9.3271 2.0872 3.2480 20 6 9.3459 1.0164 4.1941 21 6 8.0334 3.4873 1.8292 22 9 9.1480 4.1328 1.4214 23 6 6.7911 3.8482 1.3324 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9338 0.9286 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 2.8130 6.2818 -0.6292 34 1 3.5513 3.2111 1.9980 35 1 4.2417 4.5922 1.1125 36 1 4.9647 1.5996 3.0505 37 1 8.9349 0.1178 3.7339 38 1 10.3723 0.8266 4.5078 39 1 8.7446 1.2877 5.0618 40 1 6.6946 4.6488 0.6139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144466069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -57.455383 kcal Electronic energy + Delta-G solvation = -22407.819495 eV Core-core repulsion = 18944.200528 eV Total energy + Delta-G solvation = -3463.618967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.93515 -41.53535 -39.24749 -37.81271 -35.54082 -33.73432 -32.99244 -31.84160 -29.44533 -28.57071 -27.09520 -25.52227 -24.52525 -23.46092 -22.26369 -21.48448 -19.50593 -18.83497 -18.72887 -17.77642 -17.45909 -16.72986 -16.21688 -16.14731 -16.09564 -15.59836 -15.45890 -15.28580 -14.84891 -14.34499 -14.07981 -14.04058 -13.71932 -13.48697 -13.23440 -13.16119 -12.82142 -12.66009 -12.48258 -12.33193 -12.12960 -12.05330 -11.81518 -11.77155 -11.53644 -11.19841 -10.86310 -10.70280 -10.50248 -9.33218 -8.55587 -7.88386 -5.44295 -0.06927 0.12540 1.43928 1.48596 1.52997 1.94344 2.47138 2.59826 3.07968 3.22460 3.29843 3.70296 3.82013 4.02918 4.23004 4.23931 4.36413 4.44886 4.45373 4.49960 4.51034 4.63728 4.71989 4.76479 4.94032 4.95103 5.08304 5.12415 5.15743 5.24105 5.36576 5.39781 5.45942 5.59296 5.61453 5.67993 5.80206 6.12910 6.48008 6.64852 7.16429 7.83465 8.37883 9.10062 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.006240 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.192557 B = 4486.082555 C = 6381.804239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.267 4.267 7 H 0.047 0.953 8 C -0.017 4.017 9 N -0.903 5.903 10 Si 0.936 3.064 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.198 3.802 15 C -0.138 4.138 16 C 0.135 3.865 17 N -0.512 5.512 18 C 0.273 3.727 19 O -0.320 6.320 20 C 0.036 3.964 21 C 0.012 3.988 22 F -0.138 7.138 23 C -0.065 4.065 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.254 0.746 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.190 0.810 37 H 0.059 0.941 38 H 0.125 0.875 39 H 0.062 0.938 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -9.065 8.341 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.160 4.160 4 C 0.021 3.979 5 N -0.307 5.307 6 C -0.398 4.398 7 H 0.065 0.935 8 C -0.216 4.216 9 N -0.545 5.545 10 Si 0.765 3.235 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.071 3.929 15 C -0.143 4.143 16 C -0.021 4.021 17 N -0.235 5.235 18 C 0.093 3.907 19 O -0.228 6.228 20 C -0.058 4.058 21 C -0.010 4.010 22 F -0.116 7.116 23 C -0.092 4.092 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.207 0.793 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.081 0.919 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.268 -9.470 8.870 13.659 hybrid contribution 0.345 1.706 -1.584 2.353 sum 4.613 -7.764 7.286 11.604 Atomic orbital electron populations 1.21739 0.95683 1.01799 1.01255 1.21471 0.96075 0.95896 1.01988 1.21947 0.97956 0.96097 0.99953 1.21052 0.92230 0.85549 0.99051 1.43908 1.74277 1.11323 1.01235 1.19036 1.34538 0.93856 0.92358 0.93518 1.25648 0.96549 1.00092 0.99328 1.70130 1.29467 1.12967 1.41952 0.85845 0.78976 0.78269 0.80433 1.20407 1.21701 1.20696 1.19578 0.87564 0.99058 0.86653 1.21909 0.98883 0.96789 0.96723 1.22735 0.93606 0.93465 0.92270 1.67445 0.98692 1.28987 1.28399 1.19775 0.86607 0.91689 0.92667 1.86254 1.23754 1.53825 1.58977 1.23134 1.04815 0.87338 0.90497 1.17776 0.83819 0.97358 1.02082 1.91451 1.50352 1.80337 1.89503 1.21440 0.89889 1.00014 0.97854 0.91380 0.93013 0.93983 0.92405 0.90983 0.93880 0.95419 0.94714 0.92405 0.93722 0.92629 0.91413 0.79335 0.92206 0.85699 0.91941 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.15 5.93 30.60 0.18 -2.97 16 3 C -0.12 -4.31 5.54 30.60 0.17 -4.14 16 4 C 0.15 5.55 5.68 86.38 0.49 6.04 16 5 N -0.59 -26.51 2.40 -706.35 -1.69 -28.20 16 6 C -0.27 -13.74 9.42 84.03 0.79 -12.95 16 7 H 0.05 2.48 7.92 -2.91 -0.02 2.46 16 8 C -0.02 -0.88 4.84 84.86 0.41 -0.47 16 9 N -0.90 -49.15 11.78 21.65 0.26 -48.90 16 10 Si 0.94 42.83 29.61 68.60 2.03 44.86 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.20 8.24 5.38 85.63 0.46 8.70 16 15 C -0.14 -5.05 5.47 -19.77 -0.11 -5.16 16 16 C 0.14 4.20 10.77 84.63 0.91 5.11 16 17 N -0.51 -16.21 9.22 -308.76 -2.85 -19.06 16 18 C 0.27 9.29 7.50 84.84 0.64 9.92 16 19 O -0.32 -9.77 10.35 -90.50 -0.94 -10.71 16 20 C 0.04 0.75 10.38 113.37 1.18 1.93 16 21 C 0.01 0.43 7.35 22.55 0.17 0.60 16 22 F -0.14 -5.18 17.13 44.97 0.77 -4.41 16 23 C -0.06 -2.51 9.86 22.48 0.22 -2.29 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 31 H 0.03 1.35 8.04 -2.39 -0.02 1.34 16 32 H 0.06 1.89 8.02 -2.39 -0.02 1.87 16 33 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 35 H 0.07 3.29 5.78 -2.39 -0.01 3.27 16 36 H 0.19 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 Total: -1.00 -58.62 343.41 4.82 -53.80 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.01 Total: 11.15 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.22 Total: 1.45 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -4.28 Total: -96.16 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.94 Total: -10.71 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.77 Total: -4.41 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -58.62 4.82 -53.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144466069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.654 kcal (2) G-P(sol) polarization free energy of solvation -58.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds