Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.47525 * 120.00418 * 180.02562 * 14 13 3 17 17 C 1.36593 * 125.76933 * 179.71950 * 16 14 13 18 18 N 1.34808 * 106.83905 * 179.89545 * 17 16 14 19 19 C 1.46507 * 126.59772 * 180.12980 * 18 17 16 20 20 C 1.52994 * 109.47021 * 125.24271 * 19 18 17 21 21 O 1.42907 * 109.46675 * 180.02562 * 20 19 18 22 22 C 1.42901 * 113.99822 * 180.02562 * 21 20 19 23 23 N 1.40207 * 106.81186 * 0.35704 * 18 17 16 24 24 N 1.28758 * 108.36721 * 359.76978 * 23 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.08007 * 126.58257 * 0.03199 * 17 16 14 33 33 H 1.08999 * 109.47015 * 245.24816 * 19 18 17 34 34 H 1.08996 * 109.46753 * 5.23965 * 19 18 17 35 35 H 1.09000 * 109.47238 * 299.99842 * 20 19 18 36 36 H 1.08998 * 109.47276 * 60.00632 * 20 19 18 37 37 H 1.08996 * 109.47148 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47027 * 299.99973 * 22 21 20 39 39 H 1.08996 * 109.47254 * 59.99831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0450 3.3245 2.6272 17 6 -1.1508 3.9384 2.8701 18 7 -1.1003 4.4057 4.1337 19 6 -2.1578 5.1350 4.8381 20 6 -2.4811 4.4214 6.1522 21 8 -3.5129 5.1326 6.8390 22 6 -3.8916 4.5467 8.0862 23 7 0.1608 4.0640 4.6423 24 7 0.8082 3.4285 3.7286 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 -1.9788 4.0299 2.1827 33 1 -1.8206 6.1499 5.0490 34 1 -3.0512 5.1713 4.2149 35 1 -2.8182 3.4066 5.9412 36 1 -1.5875 4.3853 6.7755 37 1 -4.6792 5.1448 8.5444 38 1 -4.2574 3.5341 7.9157 39 1 -3.0273 4.5139 8.7495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153703705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = 11.003072 kcal Electronic energy + Delta-G solvation = -21764.192585 eV Core-core repulsion = 18323.462161 eV Total energy + Delta-G solvation = -3440.730424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12103 -38.77207 -38.45059 -35.05239 -35.01851 -32.32724 -31.22485 -30.87437 -29.75656 -27.09829 -26.73290 -24.29911 -23.69924 -22.56852 -21.79935 -20.26841 -19.27708 -18.14853 -17.12865 -16.80872 -16.19222 -15.99704 -15.51748 -15.27566 -15.21538 -14.51199 -14.41837 -14.19438 -13.95600 -13.17953 -12.75744 -12.64617 -12.38963 -12.02645 -11.95183 -11.82716 -11.47591 -11.23131 -11.14801 -10.91263 -10.80685 -10.43255 -10.27622 -10.24623 -10.14632 -9.61297 -9.24209 -9.13737 -8.99182 -8.46183 -7.78635 -6.08271 -4.16620 1.15998 1.81573 2.01616 3.26451 3.27977 3.35871 3.39782 3.92651 3.94873 4.20668 4.34077 4.38991 4.44387 4.68871 4.83276 4.85699 4.96916 5.00004 5.13180 5.19730 5.23039 5.27470 5.44624 6.03273 6.27512 6.42515 6.49545 6.51620 6.68976 7.08794 7.21866 7.39070 7.46280 7.66331 7.76694 7.92401 8.04496 8.21388 8.71585 8.81254 9.12660 9.50221 10.97284 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034634 B = 0.003155 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.255775 B = 8871.513401 C = 9282.251139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.688 5.688 14 C 0.586 3.414 15 O -0.548 6.548 16 C -0.085 4.085 17 C 0.088 3.912 18 N -0.368 5.368 19 C 0.128 3.872 20 C 0.050 3.950 21 O -0.390 6.390 22 C 0.034 3.966 23 N -0.075 5.075 24 N -0.200 5.200 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.263 0.737 31 H 0.397 0.603 32 H 0.205 0.795 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 7.574 15.918 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.334 5.334 14 C 0.368 3.632 15 O -0.426 6.426 16 C -0.224 4.224 17 C -0.068 4.068 18 N -0.155 5.155 19 C 0.006 3.994 20 C -0.028 4.028 21 O -0.308 6.308 22 C -0.063 4.063 23 N -0.055 5.055 24 N -0.074 5.074 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.221 0.779 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.077 7.693 16.202 22.197 hybrid contribution 0.561 -0.247 -0.325 0.694 sum -12.516 7.445 15.877 21.545 Atomic orbital electron populations 1.21845 0.98387 0.98064 1.01186 1.21942 0.92616 0.99706 1.02429 1.18872 0.94419 0.89247 0.80685 0.93043 1.21288 0.90652 1.38753 1.06285 0.91863 1.24877 0.98618 0.94820 0.95374 1.69905 1.34997 1.37846 1.09344 0.86395 0.84903 0.77734 0.78112 1.19668 1.20913 1.20934 1.46370 1.13999 1.54247 1.18818 1.16765 0.83371 0.78949 0.84143 1.90778 1.51935 1.61177 1.38743 1.22025 0.93375 1.10028 0.97007 1.23389 1.00764 0.95652 0.86990 1.50233 1.14127 1.40485 1.10662 1.21607 0.88367 0.95787 0.93628 1.22640 0.91941 0.95254 0.92953 1.87775 1.55716 1.52345 1.34938 1.22798 1.00194 0.98564 0.84722 1.81937 0.88266 1.16997 1.18265 1.74663 1.24495 1.09264 0.98959 0.95835 0.93055 0.94355 0.94900 0.88153 0.92667 0.76980 0.77863 0.87595 0.86888 0.92275 0.91237 0.89093 0.93700 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.69 -15.12 5.02 -55.98 -0.28 -15.40 16 14 C 0.59 12.03 6.39 -12.47 -0.08 11.95 16 15 O -0.55 -12.37 14.00 5.27 0.07 -12.29 16 16 C -0.08 -1.44 6.99 -83.55 -0.58 -2.02 16 17 C 0.09 1.12 11.27 -16.84 -0.19 0.93 16 18 N -0.37 -4.21 3.69 -61.06 -0.23 -4.44 16 19 C 0.13 0.94 6.91 -4.04 -0.03 0.91 16 20 C 0.05 0.38 6.14 37.15 0.23 0.61 16 21 O -0.39 -3.04 10.70 -35.23 -0.38 -3.42 16 22 C 0.03 0.18 11.01 101.05 1.11 1.29 16 23 N -0.07 -1.10 13.65 60.35 0.82 -0.28 16 24 N -0.20 -3.41 12.04 32.85 0.40 -3.01 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 8.21 8.23 -40.82 -0.34 7.87 16 32 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.11 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.68 332.74 -4.40 -36.08 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.50 Total: 4.53 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.08 Total: 1.48 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 1.34 Total: -47.27 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.30 Total: -15.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.68 -4.40 -36.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153703705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.081 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds