Wall clock time and date at job start Tue Mar 31 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34776 * 119.99595 * 180.02562 * 16 15 12 18 18 O 1.21497 * 120.00751 * 359.97438 * 17 16 15 19 19 C 1.48283 * 119.99520 * 179.97438 * 17 16 15 20 20 N 1.31602 * 128.71290 * 359.67843 * 19 17 16 21 21 O 1.20902 * 109.18008 * 179.82291 * 20 19 17 22 22 N 1.20840 * 115.90531 * 0.49475 * 21 20 19 23 23 C 1.30643 * 109.61677 * 359.69469 * 22 21 20 24 24 C 1.50703 * 128.63643 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 26 26 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 28 28 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 29 29 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 30 30 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 32 32 H 1.08996 * 109.47024 * 179.97438 * 14 12 3 33 33 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 34 34 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 35 35 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 36 36 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 37 37 H 1.09004 * 109.47184 * 269.97534 * 24 23 22 38 38 H 1.08996 * 109.46989 * 29.97315 * 24 23 22 39 39 H 1.09005 * 109.46850 * 149.97597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6457 0.2643 -1.5017 18 8 5.6590 -0.2033 -2.6230 19 6 6.7989 0.0485 -0.5948 20 7 6.9675 0.4762 0.6383 21 8 8.0377 0.0919 1.0491 22 7 8.6963 -0.5622 0.2754 23 6 8.0473 -0.6938 -0.8508 24 6 8.4692 -1.4232 -2.1002 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3111 5.0278 0.2068 31 1 0.3850 2.7440 -1.6406 32 1 1.4120 2.6307 -3.0897 33 1 0.7443 1.1535 -2.3542 34 1 3.0183 0.2299 -2.2607 35 1 3.7788 1.7184 -2.8725 36 1 4.5726 1.3528 -0.1869 37 1 9.0095 -0.7396 -2.7551 38 1 9.1169 -2.2579 -1.8324 39 1 7.5862 -1.7996 -2.6168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157293521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:35 Heat of formation + Delta-G solvation = 93.810267 kcal Electronic energy + Delta-G solvation = -22996.440392 eV Core-core repulsion = 19559.300757 eV Total energy + Delta-G solvation = -3437.139635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.84832 -39.45075 -37.04421 -35.23588 -34.65009 -33.89189 -31.90279 -30.95633 -29.51546 -28.36524 -26.67763 -24.58962 -23.87836 -22.51290 -21.68016 -20.46742 -19.47978 -19.02401 -18.19948 -17.15010 -16.72328 -15.70377 -15.11162 -14.78435 -14.27172 -14.20628 -13.88770 -13.64577 -13.56528 -13.27194 -12.82102 -12.49532 -12.04019 -12.00651 -11.82386 -11.69086 -11.48511 -11.35695 -11.12155 -11.06876 -10.81180 -10.58400 -10.36562 -10.33669 -10.06448 -9.93344 -9.64565 -9.58185 -8.71098 -8.53773 -6.79259 -5.90379 -3.34006 0.86196 1.28866 2.90240 3.14498 3.33870 3.37534 3.40179 3.42859 3.51461 4.07833 4.42332 4.70195 4.93537 5.15511 5.25239 5.29539 5.32123 5.45156 5.76535 5.84205 5.99833 6.07028 6.20611 6.37067 6.43059 6.48565 6.59395 6.64307 6.72338 6.82892 6.94281 7.22733 7.44144 7.54835 7.74659 7.79270 8.28835 8.37580 8.47418 9.12416 9.74384 10.28174 11.16811 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.005800 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.539578 B = 4826.663936 C = 5797.581544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.260 4.260 5 H 0.066 0.934 6 C 0.009 3.991 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.105 0.895 14 C -0.142 4.142 15 C 0.099 3.901 16 N -0.678 5.678 17 C 0.595 3.405 18 O -0.533 6.533 19 C -0.039 4.039 20 N -0.312 5.312 21 O 0.338 5.662 22 N -0.364 5.364 23 C 0.057 3.943 24 C -0.073 4.073 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.255 0.745 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.419 0.581 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.860 -7.553 -4.120 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.068 3.932 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.026 4.026 16 N -0.329 5.329 17 C 0.376 3.624 18 O -0.410 6.410 19 C -0.205 4.205 20 N -0.031 5.031 21 O 0.114 5.886 22 N -0.091 5.091 23 C -0.109 4.109 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.110 -7.388 -3.825 12.337 hybrid contribution -0.172 0.645 0.466 0.814 sum 8.938 -6.743 -3.359 11.689 Atomic orbital electron populations 1.22385 0.99651 0.98392 1.02148 1.20806 0.92055 0.87551 0.98082 1.44013 1.73781 1.09785 1.02933 1.19116 1.43323 0.89272 0.87279 0.91583 1.25030 0.98731 0.97828 0.97447 1.69994 1.42662 1.08689 1.32321 0.86468 0.79319 0.79108 0.82510 1.20790 1.21721 1.20911 1.20546 0.90895 0.96655 0.85084 0.87776 1.22115 1.00423 0.99651 0.97985 1.22332 0.86569 1.01125 0.92561 1.45900 1.16426 1.50907 1.19622 1.16529 0.80707 0.80163 0.85002 1.90761 1.80250 1.51157 1.18796 1.26276 0.99399 1.02198 0.92592 1.75493 1.01142 1.14769 1.11745 1.85074 1.19525 1.47473 1.36538 1.75015 1.19779 1.12263 1.02068 1.26206 0.89397 0.98745 0.96594 1.20304 1.03729 0.99209 0.89770 0.93116 0.95335 0.92851 0.94505 0.94554 0.93515 0.89943 0.95062 0.95073 0.92140 0.91989 0.74294 0.89021 0.89701 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.02 37.15 0.37 -2.78 16 2 C 0.14 2.79 5.73 -4.04 -0.02 2.77 16 3 N -0.58 -12.84 1.84 -165.66 -0.30 -13.14 16 4 C -0.26 -6.44 9.50 -15.06 -0.14 -6.58 16 5 H 0.07 1.66 7.90 -52.48 -0.41 1.25 16 6 C 0.01 0.23 4.84 -17.43 -0.08 0.15 16 7 N -0.89 -23.35 10.24 55.49 0.57 -22.78 16 8 Si 0.90 20.54 29.59 -169.99 -5.03 15.51 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.18 3.65 1.93 -67.93 -0.13 3.52 16 13 H 0.10 2.48 5.93 -51.93 -0.31 2.17 16 14 C -0.14 -2.82 8.25 37.16 0.31 -2.51 16 15 C 0.10 1.80 4.86 -4.04 -0.02 1.78 16 16 N -0.68 -12.25 5.39 -61.11 -0.33 -12.57 16 17 C 0.59 10.22 7.85 -12.13 -0.10 10.13 16 18 O -0.53 -9.71 15.96 5.37 0.09 -9.62 16 19 C -0.04 -0.60 7.56 -80.07 -0.61 -1.21 16 20 N -0.31 -4.94 12.13 33.49 0.41 -4.53 16 21 O 0.34 4.84 11.65 27.26 0.32 5.16 16 22 N -0.36 -4.94 12.22 33.75 0.41 -4.53 16 23 C 0.06 0.75 7.79 -79.33 -0.62 0.13 16 24 C -0.07 -0.70 10.22 36.01 0.37 -0.33 16 25 H 0.05 0.98 6.03 -51.93 -0.31 0.66 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 29 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.08 1.88 7.22 -51.93 -0.37 1.51 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 34 H 0.06 1.10 6.76 -51.93 -0.35 0.75 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.42 8.08 7.94 -40.82 -0.32 7.76 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.05 7.31 -51.93 -0.38 0.67 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -26.28 326.07 -4.86 -31.14 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.22 Total: 5.40 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.67 Total: 5.06 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.75 Total: -57.56 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: 0.40 Total: -4.46 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.28 -4.86 -31.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157293521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.946 kcal (2) G-P(sol) polarization free energy of solvation -26.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds