Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34776 * 119.99595 * 180.02562 * 16 15 12 18 18 O 1.21497 * 120.00751 * 359.97438 * 17 16 15 19 19 C 1.48283 * 119.99520 * 179.97438 * 17 16 15 20 20 N 1.31602 * 128.71290 * 359.67843 * 19 17 16 21 21 O 1.20902 * 109.18008 * 179.82291 * 20 19 17 22 22 N 1.20840 * 115.90531 * 0.49475 * 21 20 19 23 23 C 1.30643 * 109.61677 * 359.69469 * 22 21 20 24 24 C 1.50703 * 128.63643 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 26 26 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 28 28 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 29 29 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 30 30 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 32 32 H 1.08996 * 109.47024 * 179.97438 * 14 12 3 33 33 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 34 34 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 35 35 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 36 36 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 37 37 H 1.09004 * 109.47184 * 269.97534 * 24 23 22 38 38 H 1.08996 * 109.46989 * 29.97315 * 24 23 22 39 39 H 1.09005 * 109.46850 * 149.97597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6457 0.2643 -1.5017 18 8 5.6590 -0.2033 -2.6230 19 6 6.7989 0.0485 -0.5948 20 7 6.9675 0.4762 0.6383 21 8 8.0377 0.0919 1.0491 22 7 8.6963 -0.5622 0.2754 23 6 8.0473 -0.6938 -0.8508 24 6 8.4692 -1.4232 -2.1002 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3111 5.0278 0.2068 31 1 0.3850 2.7440 -1.6406 32 1 1.4120 2.6307 -3.0897 33 1 0.7443 1.1535 -2.3542 34 1 3.0183 0.2299 -2.2607 35 1 3.7788 1.7184 -2.8725 36 1 4.5726 1.3528 -0.1869 37 1 9.0095 -0.7396 -2.7551 38 1 9.1169 -2.2579 -1.8324 39 1 7.5862 -1.7996 -2.6168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157293521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = 78.206338 kcal Electronic energy + Delta-G solvation = -22997.117029 eV Core-core repulsion = 19559.300757 eV Total energy + Delta-G solvation = -3437.816272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.98080 -40.85119 -38.67934 -36.32220 -35.86091 -35.35531 -33.74621 -32.51597 -30.44138 -30.10818 -28.03042 -26.10560 -25.54074 -23.61474 -23.29967 -21.75923 -21.12615 -20.16391 -19.55543 -18.73581 -18.08497 -17.15452 -16.65874 -16.53775 -15.81399 -15.59863 -15.19492 -15.02295 -14.45760 -14.39311 -14.35192 -14.07618 -13.70124 -13.29444 -13.10227 -13.01396 -13.00192 -12.89782 -12.85255 -12.60597 -12.28419 -12.21703 -12.15155 -11.75247 -11.46906 -11.38995 -11.28970 -11.27510 -10.45264 -10.12970 -8.61127 -7.83232 -5.26426 -0.35541 0.22979 1.48789 1.52815 1.56745 1.62785 1.81954 2.30466 2.39542 2.54376 2.84899 3.31951 3.61087 3.63145 3.76678 4.09274 4.20154 4.43736 4.50943 4.61310 4.70175 4.72755 4.81855 4.89541 4.90332 5.01514 5.06774 5.10838 5.17753 5.30210 5.34988 5.59675 5.73538 5.76175 5.92714 6.34029 6.47658 6.87505 7.23725 7.34357 7.92899 8.41054 9.21141 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.005800 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.539578 B = 4826.663936 C = 5797.581544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.059 0.941 6 C -0.030 4.030 7 N -0.911 5.911 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.298 1.298 11 H -0.284 1.284 12 C 0.179 3.821 13 H 0.073 0.927 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.685 5.685 17 C 0.600 3.400 18 O -0.542 6.542 19 C -0.059 4.059 20 N -0.325 5.325 21 O 0.343 5.657 22 N -0.366 5.366 23 C 0.071 3.929 24 C -0.073 4.073 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.248 0.752 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.938 -8.991 -4.841 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.389 4.389 5 H 0.076 0.924 6 C -0.228 4.228 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.225 1.225 11 H -0.211 1.211 12 C 0.072 3.928 13 H 0.091 0.909 14 C -0.191 4.191 15 C -0.014 4.014 16 N -0.334 5.334 17 C 0.382 3.618 18 O -0.419 6.419 19 C -0.224 4.224 20 N -0.043 5.043 21 O 0.118 5.882 22 N -0.095 5.095 23 C -0.095 4.095 24 C -0.130 4.130 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.176 -8.839 -4.552 14.227 hybrid contribution -0.463 1.019 0.688 1.314 sum 9.713 -7.820 -3.864 13.055 Atomic orbital electron populations 1.22255 0.98883 0.99871 1.00557 1.20884 0.92575 0.86291 0.98768 1.44104 1.74183 1.10414 1.02620 1.19220 1.42139 0.89491 0.88034 0.92358 1.25492 0.99556 0.98590 0.99136 1.70118 1.43886 1.08155 1.33450 0.85702 0.78688 0.77610 0.80530 1.20723 1.22477 1.21058 1.20419 0.91839 0.95527 0.85000 0.90944 1.21946 0.99075 0.99959 0.98098 1.22106 0.86008 1.00879 0.92361 1.45897 1.16847 1.51427 1.19242 1.16580 0.80685 0.79474 0.85019 1.90750 1.80529 1.51449 1.19221 1.26164 0.99984 1.03664 0.92592 1.75467 1.01762 1.14993 1.12128 1.85069 1.19084 1.47439 1.36653 1.75044 1.19678 1.12578 1.02165 1.26720 0.87982 0.97489 0.97304 1.20521 1.04141 1.00031 0.88318 0.93661 0.92288 0.95392 0.92840 0.94753 0.94276 0.93249 0.93315 0.93659 0.91492 0.91065 0.75080 0.87266 0.87204 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 10.02 71.98 0.72 -4.99 16 2 C 0.14 5.36 5.73 86.38 0.49 5.85 16 3 N -0.59 -25.84 1.84 -678.03 -1.25 -27.09 16 4 C -0.26 -12.85 9.50 84.04 0.80 -12.05 16 5 H 0.06 2.95 7.90 -2.91 -0.02 2.93 16 6 C -0.03 -1.56 4.84 84.86 0.41 -1.15 16 7 N -0.91 -48.50 10.24 21.65 0.22 -48.28 16 8 Si 0.94 42.77 29.59 68.60 2.03 44.80 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.18 7.38 1.93 44.99 0.09 7.47 16 13 H 0.07 3.50 5.93 -2.39 -0.01 3.48 16 14 C -0.13 -5.11 8.25 71.98 0.59 -4.52 16 15 C 0.11 3.90 4.86 86.38 0.42 4.32 16 16 N -0.68 -24.15 5.39 -465.55 -2.51 -26.66 16 17 C 0.60 19.87 7.85 86.92 0.68 20.55 16 18 O -0.54 -18.77 15.96 -3.71 -0.06 -18.83 16 19 C -0.06 -1.77 7.56 44.29 0.34 -1.43 16 20 N -0.33 -10.05 12.13 -52.06 -0.63 -10.68 16 21 O 0.34 9.42 11.65 140.85 1.64 11.06 16 22 N -0.37 -9.25 12.22 -51.82 -0.63 -9.88 16 23 C 0.07 1.73 7.79 45.17 0.35 2.08 16 24 C -0.07 -1.19 10.22 71.24 0.73 -0.46 16 25 H 0.04 1.68 6.03 -2.39 -0.01 1.67 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.86 6.35 -2.39 -0.02 1.85 16 29 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 30 H 0.25 13.15 8.31 -92.71 -0.77 12.37 16 31 H 0.05 2.26 7.22 -2.39 -0.02 2.24 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.60 6.50 -2.38 -0.02 1.58 16 34 H 0.07 2.28 6.76 -2.39 -0.02 2.26 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.41 15.84 7.94 -92.71 -0.74 15.10 16 37 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.75 7.31 -2.38 -0.02 1.73 16 Total: -1.00 -55.58 326.07 4.78 -50.80 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.35 Total: 19.09 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 5.62 Total: 15.68 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.80 Total: -122.59 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 1.58 Total: -7.77 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -55.58 4.78 -50.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157293521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.003 kcal (2) G-P(sol) polarization free energy of solvation -55.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds