Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47487 * 2 1 4 4 C 1.35997 * 117.00365 * 179.97438 * 3 2 1 5 5 C 1.39688 * 125.67201 * 180.02562 * 4 3 2 6 6 C 1.37986 * 107.63475 * 180.02562 * 5 4 3 7 7 C 1.47176 * 126.43150 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99826 * 359.72701 * 7 6 5 9 9 N 1.34777 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47368 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99917 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00253 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99975 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00113 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46887 * 59.99705 * 18 16 14 20 20 H 1.48497 * 109.46885 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 299.99588 * 18 16 14 22 22 N 1.36666 * 107.13080 * 0.26158 * 6 5 4 23 23 H 0.96999 * 126.09390 * 179.69926 * 22 6 5 24 24 N 1.31223 * 125.67098 * 0.04525 * 4 3 2 25 25 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47114 * 299.99853 * 1 2 3 27 27 H 1.09002 * 109.47351 * 59.99472 * 1 2 3 28 28 H 1.09004 * 109.46962 * 240.00421 * 2 1 3 29 29 H 1.09003 * 109.46925 * 120.00851 * 2 1 3 30 30 H 1.08000 * 126.18188 * 0.06226 * 5 4 3 31 31 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 32 32 H 1.08992 * 109.47647 * 300.00149 * 10 9 7 33 33 H 1.08996 * 109.46956 * 60.00915 * 10 9 7 34 34 H 1.08996 * 109.47407 * 300.00665 * 11 10 9 35 35 H 1.09000 * 109.46986 * 60.00436 * 11 10 9 36 36 H 1.09004 * 109.47108 * 300.00289 * 12 11 10 37 37 H 1.09004 * 109.47368 * 60.00188 * 12 11 10 38 38 H 0.96996 * 119.99986 * 0.02562 * 13 12 11 39 39 H 0.96997 * 120.00284 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.0135 2.7571 0.0011 6 6 5.3702 2.5055 0.0010 7 6 6.4456 3.5104 0.0020 8 8 6.1707 4.6952 -0.0019 9 7 7.7348 3.1176 0.0022 10 6 8.8052 4.1178 0.0026 11 6 10.1627 3.4121 0.0022 12 6 11.2806 4.4566 0.0032 13 7 12.5805 3.7808 0.0022 14 6 13.7350 4.5172 0.0024 15 1 13.6873 5.5962 0.0029 16 6 14.9666 3.8769 0.0008 17 7 15.0247 2.5620 -0.0003 18 14 16.5416 4.8814 0.0018 19 1 16.5829 5.7358 1.2156 20 1 17.7117 3.9671 0.0004 21 1 16.5820 5.7397 -1.2094 22 7 5.5279 1.1480 -0.0057 23 1 6.3723 0.6708 -0.0115 24 7 4.2529 0.5688 0.0002 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 3.5456 3.7305 0.0022 31 1 7.9540 2.1727 0.0013 32 1 8.7201 4.7415 -0.8871 33 1 8.7197 4.7410 0.8928 34 1 10.2481 2.7880 0.8917 35 1 10.2480 2.7891 -0.8882 36 1 11.1954 5.0810 -0.8862 37 1 11.1953 5.0793 0.8938 38 1 12.6233 2.8118 0.0006 39 1 15.8853 2.1145 -0.0010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160711622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = 6.496824 kcal Electronic energy + Delta-G solvation = -20555.057146 eV Core-core repulsion = 17114.131317 eV Total energy + Delta-G solvation = -3440.925830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75622 -39.69660 -38.52040 -36.21603 -34.54809 -32.60409 -32.07998 -30.93605 -30.44114 -29.49062 -25.79002 -24.35685 -23.30395 -22.28566 -21.51401 -21.34342 -20.43478 -19.10686 -17.38673 -17.07289 -16.74140 -16.25513 -15.93283 -15.91721 -14.99647 -14.80196 -14.47058 -14.20194 -13.98062 -13.87018 -13.32237 -13.10959 -13.02652 -13.00059 -12.54004 -12.10952 -11.77126 -11.28680 -11.27829 -11.04563 -10.98224 -10.85102 -10.69470 -10.39019 -10.11281 -9.75222 -9.57015 -9.29934 -9.03451 -8.91830 -6.98563 -5.81341 -3.10643 0.72251 2.02050 2.19305 2.52785 2.92057 3.03388 3.42221 3.46469 3.47544 4.25268 4.33569 4.54734 4.55934 4.61990 4.89864 4.91552 5.04365 5.08970 5.18076 5.38711 5.38782 5.48850 5.52879 5.58699 5.76764 5.79591 5.93867 6.08241 6.15946 6.23836 6.50488 6.70668 6.74907 6.88326 7.06078 7.19964 7.65882 7.76552 8.37473 9.48689 10.04914 10.39379 11.41493 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.056011 B = 0.002086 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.786219 B =13419.435072 C =13882.865979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.288 6.288 4 C 0.261 3.739 5 C -0.192 4.192 6 C 0.063 3.937 7 C 0.582 3.418 8 O -0.512 6.512 9 N -0.719 5.719 10 C 0.122 3.878 11 C -0.139 4.139 12 C 0.156 3.844 13 N -0.733 5.733 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 N -0.448 5.448 23 H 0.446 0.554 24 N -0.316 5.316 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.168 0.832 31 H 0.398 0.602 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.383 0.617 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.586 -6.194 -0.005 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.192 6.192 4 C 0.058 3.942 5 C -0.223 4.223 6 C -0.068 4.068 7 C 0.365 3.635 8 O -0.385 6.385 9 N -0.370 5.370 10 C -0.001 4.001 11 C -0.177 4.177 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 N -0.166 5.166 23 H 0.292 0.708 24 N -0.159 5.159 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.185 0.815 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.217 0.783 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.782 -6.167 -0.006 27.483 hybrid contribution 1.443 -0.049 0.000 1.444 sum -25.339 -6.216 -0.005 26.090 Atomic orbital electron populations 1.21800 0.92539 1.03036 1.03598 1.22754 0.95570 0.81037 1.02339 1.86325 1.13648 1.29859 1.89389 1.20235 0.84493 0.91917 0.97545 1.21088 0.89687 0.98343 1.13228 1.21310 0.95425 0.84393 1.05660 1.17017 0.81570 0.87222 0.77670 1.90883 1.82797 1.16036 1.48798 1.45978 1.05516 1.10941 1.74600 1.21495 0.84911 0.90557 1.03167 1.21969 0.92968 0.99938 1.02851 1.20517 0.85048 0.93266 0.98365 1.42314 0.99743 1.06041 1.89686 1.19204 0.84444 0.90760 1.42963 0.91091 1.24757 0.97700 0.95652 1.02852 1.69645 1.24423 1.06592 1.57653 0.86232 0.82981 0.78847 0.77919 1.21197 1.21657 1.21193 1.46087 1.07011 1.03474 1.60018 0.70780 1.77337 0.88112 1.20197 1.30254 0.90163 0.91425 0.91429 0.91664 0.91663 0.81460 0.76858 0.90647 0.90645 0.91164 0.91161 0.95940 0.95928 0.78314 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.43 6.33 37.16 0.24 0.66 16 3 O -0.29 -2.93 10.22 -19.73 -0.20 -3.13 16 4 C 0.26 2.90 7.85 -17.27 -0.14 2.76 16 5 C -0.19 -2.13 10.63 -39.13 -0.42 -2.55 16 6 C 0.06 0.66 7.12 -82.18 -0.59 0.07 16 7 C 0.58 6.87 7.80 -12.63 -0.10 6.77 16 8 O -0.51 -7.83 16.90 5.25 0.09 -7.74 16 9 N -0.72 -7.19 5.55 -61.47 -0.34 -7.53 16 10 C 0.12 1.46 5.67 -4.04 -0.02 1.44 16 11 C -0.14 -1.93 5.44 -26.73 -0.15 -2.07 16 12 C 0.16 2.96 6.26 -4.04 -0.03 2.93 16 13 N -0.73 -18.13 5.60 -59.91 -0.34 -18.47 16 14 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 N -0.45 -3.94 7.33 33.41 0.24 -3.69 16 23 H 0.45 2.49 8.23 -182.65 -1.50 0.98 16 24 N -0.32 -3.38 12.05 30.46 0.37 -3.01 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.40 2.84 7.65 -40.82 -0.31 2.53 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.38 9.84 7.67 -40.82 -0.31 9.53 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -33.86 341.77 -7.13 -40.99 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.75 Total: 5.16 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.06 Total: 2.26 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.66 Total: -59.87 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.11 Total: -10.88 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.86 -7.13 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160711622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.490 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds