Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 H 1.09005 * 109.47072 * 304.15668 * 3 2 1 5 5 C 1.50697 * 109.47263 * 184.16469 * 3 2 1 6 6 H 1.08007 * 119.99374 * 239.99806 * 5 3 2 7 7 C 1.37877 * 120.00342 * 59.99307 * 5 3 2 8 8 N 1.31509 * 119.99884 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46728 * 60.00520 * 9 7 5 11 11 H 1.48498 * 109.46663 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47276 * 300.00654 * 9 7 5 13 13 N 1.46497 * 109.47316 * 64.15828 * 3 2 1 14 14 C 1.39031 * 120.00038 * 205.70219 * 13 3 2 15 15 C 1.38932 * 119.65442 * 354.41820 * 14 13 3 16 16 C 1.39435 * 118.95755 * 179.72509 * 15 14 13 17 17 C 1.48385 * 120.86386 * 180.25026 * 16 15 14 18 18 C 1.39339 * 120.11892 * 359.72573 * 17 16 15 19 19 C 1.38018 * 119.87560 * 179.79147 * 18 17 16 20 20 C 1.38323 * 120.11954 * 0.48068 * 19 18 17 21 21 C 1.38315 * 120.24641 * 359.74742 * 20 19 18 22 22 C 1.38020 * 120.12382 * 0.02562 * 21 20 19 23 23 C 1.39973 * 118.26899 * 0.27252 * 16 15 14 24 24 C 1.37788 * 119.19486 * 0.02562 * 23 16 15 25 25 N 1.32021 * 120.98081 * 359.97438 * 24 23 16 26 26 H 1.09002 * 109.47419 * 54.93358 * 1 2 3 27 27 H 1.08996 * 109.47273 * 174.93493 * 1 2 3 28 28 H 1.09006 * 109.46850 * 294.93398 * 1 2 3 29 29 H 1.09008 * 109.46878 * 239.99918 * 2 1 3 30 30 H 1.09002 * 109.47564 * 120.00355 * 2 1 3 31 31 H 0.96998 * 119.99464 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00007 * 25.69664 * 13 3 2 33 33 H 1.08004 * 120.51513 * 359.97438 * 15 14 13 34 34 H 1.08003 * 120.06755 * 0.02562 * 18 17 16 35 35 H 1.08007 * 119.94013 * 180.22976 * 19 18 17 36 36 H 1.08002 * 119.87826 * 179.77021 * 20 19 18 37 37 H 1.08001 * 119.94361 * 179.97438 * 21 20 19 38 38 H 1.07993 * 120.06765 * 179.97438 * 22 21 20 39 39 H 1.08006 * 120.39987 * 180.02562 * 23 16 15 40 40 H 1.08006 * 119.51391 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9774 -0.8504 5 6 3.5434 1.4437 -0.1032 6 1 4.1380 1.8921 0.6791 7 6 4.1600 0.8723 -1.1961 8 7 3.4360 0.3267 -2.1488 9 14 6.0237 0.8746 -1.3242 10 1 6.6003 0.1463 -0.1655 11 1 6.4339 0.2048 -2.5845 12 1 6.5181 2.2749 -1.3245 13 7 1.6352 2.1036 1.2431 14 6 1.4897 3.4858 1.2798 15 6 1.8412 4.2437 0.1698 16 6 1.6839 5.6283 0.2204 17 6 2.0407 6.4779 -0.9426 18 6 2.5459 5.8971 -2.1040 19 6 2.8721 6.6918 -3.1843 20 6 2.7077 8.0633 -3.1119 21 6 2.2111 8.6456 -1.9598 22 6 1.8772 7.8601 -0.8751 23 6 1.1810 6.1957 1.3970 24 6 0.8618 5.3744 2.4563 25 7 1.0232 4.0666 2.3749 26 1 -0.3634 0.5904 -0.8411 27 1 -0.3633 -1.0236 -0.0907 28 1 -0.3633 0.4333 0.9319 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8698 -0.0749 -2.9178 32 1 1.4687 1.5770 2.0405 33 1 2.2265 3.7676 -0.7197 34 1 2.6784 4.8267 -2.1603 35 1 3.2603 6.2423 -4.0865 36 1 2.9677 8.6818 -3.9583 37 1 2.0851 9.7170 -1.9084 38 1 1.4899 8.3157 0.0242 39 1 1.0449 7.2644 1.4735 40 1 0.4730 5.8068 3.3664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = 53.553873 kcal Electronic energy + Delta-G solvation = -21428.415335 eV Core-core repulsion = 18400.379316 eV Total energy + Delta-G solvation = -3028.036020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.86036 -38.53325 -36.19651 -33.36379 -32.56342 -31.47137 -30.83387 -29.20973 -28.60437 -26.67610 -23.77545 -23.45521 -22.68618 -21.51059 -20.57895 -19.76029 -17.51284 -16.61332 -16.32969 -15.83749 -15.19653 -14.87433 -14.62729 -14.21934 -13.81099 -13.69574 -13.49154 -13.06370 -12.98803 -12.74935 -12.64488 -12.57194 -11.83869 -11.50605 -11.34660 -11.09343 -11.04453 -10.82936 -10.56098 -10.35572 -10.07679 -10.02049 -9.82622 -9.72107 -8.88035 -8.84383 -8.79574 -8.51296 -8.03294 -6.83443 -6.12649 -4.24834 0.99107 1.56128 2.02872 2.40720 3.24265 3.28935 3.32970 3.99302 4.12577 4.36330 4.67582 4.83807 4.96567 5.08896 5.12770 5.21494 5.31887 5.56680 5.62851 5.69736 5.92894 5.96431 6.01740 6.09068 6.14764 6.17715 6.35559 6.40333 6.50055 6.58007 6.61987 6.74991 6.77397 6.87425 6.98690 7.04284 7.12941 7.24520 7.42096 7.59223 7.76775 8.05221 8.15971 8.55691 8.78086 8.99743 9.43663 10.87054 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.006243 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.538183 B = 4483.947722 C = 5870.987172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.276 3.724 4 H 0.041 0.959 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.420 3.580 15 C -0.211 4.211 16 C 0.023 3.977 17 C -0.041 4.041 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.251 4.251 24 C 0.143 3.857 25 N -0.565 5.565 26 H 0.044 0.956 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 11.304 0.422 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.059 0.941 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.328 5.328 14 C 0.182 3.818 15 C -0.236 4.236 16 C 0.015 3.985 17 C -0.041 4.041 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.125 4.125 23 C -0.274 4.274 24 C -0.015 4.015 25 N -0.284 5.284 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.969 10.523 0.727 11.270 hybrid contribution 1.259 0.283 -0.507 1.386 sum -2.711 10.805 0.220 11.142 Atomic orbital electron populations 1.21815 0.98729 0.99539 1.00296 1.21866 0.92188 0.99200 1.03408 1.18852 0.94012 0.89165 0.80612 0.94123 1.21529 0.91361 1.37825 1.06028 0.92241 1.24886 0.98363 0.94864 0.95432 1.69832 1.35241 1.37992 1.09650 0.86619 0.85420 0.78463 0.77383 1.20217 1.21160 1.20117 1.45280 1.70939 1.01540 1.15019 1.18380 0.88412 0.86470 0.88556 1.21717 1.07941 0.92683 1.01308 1.18818 0.94844 0.92451 0.92389 1.18824 0.99128 0.92837 0.93318 1.21516 0.96768 1.01063 0.92289 1.21134 1.00224 0.93753 0.98705 1.21177 0.99916 0.95042 0.97953 1.21019 1.00359 0.99509 0.93620 1.21223 0.99812 0.92821 0.98684 1.21569 1.10498 1.00271 0.95106 1.22052 0.94235 0.88066 0.97122 1.67149 1.21549 1.12879 1.26862 0.93668 0.94480 0.94317 0.87411 0.94180 0.92535 0.77638 0.83587 0.84745 0.85877 0.86367 0.86230 0.85772 0.86119 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 37.16 0.36 -2.39 16 2 C -0.13 -2.80 5.31 -26.73 -0.14 -2.94 16 3 C 0.28 6.39 1.65 -69.09 -0.11 6.27 16 4 H 0.04 1.03 6.67 -51.93 -0.35 0.68 16 5 C -0.53 -13.53 8.38 -34.44 -0.29 -13.82 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -23.33 11.30 55.43 0.63 -22.70 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -14.83 4.73 -55.10 -0.26 -15.09 16 14 C 0.42 8.77 7.62 -155.03 -1.18 7.59 16 15 C -0.21 -4.31 8.46 -38.88 -0.33 -4.64 16 16 C 0.02 0.40 5.91 -104.62 -0.62 -0.22 16 17 C -0.04 -0.67 5.88 -104.90 -0.62 -1.28 16 18 C -0.10 -1.60 9.45 -39.25 -0.37 -1.97 16 19 C -0.12 -1.66 10.03 -39.63 -0.40 -2.06 16 20 C -0.12 -1.48 10.04 -39.52 -0.40 -1.88 16 21 C -0.13 -1.51 10.03 -39.63 -0.40 -1.91 16 22 C -0.11 -1.45 9.45 -39.25 -0.37 -1.82 16 23 C -0.25 -3.96 9.49 -39.10 -0.37 -4.33 16 24 C 0.14 2.33 11.16 -17.63 -0.20 2.14 16 25 N -0.56 -10.97 10.38 -12.52 -0.13 -11.10 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.11 2.63 5.97 -51.92 -0.31 2.32 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.39 7.80 8.73 -40.82 -0.36 7.44 16 33 H 0.15 3.20 4.41 -52.48 -0.23 2.97 16 34 H 0.13 2.36 6.30 -52.48 -0.33 2.03 16 35 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 39 H 0.12 1.53 6.34 -52.48 -0.33 1.20 16 40 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -27.19 330.52 -10.48 -37.67 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.15 Total: 12.43 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -5.52 Total: -21.64 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.24 Total: -48.89 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.19 -10.48 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.221 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds