Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47225 * 2 1 4 4 C 1.46503 * 119.99871 * 270.00009 * 3 2 1 5 5 C 1.50697 * 109.47038 * 269.99799 * 4 3 2 6 6 H 1.07996 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00079 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00284 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99741 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47219 * 90.00091 * 9 7 5 11 11 H 1.48504 * 109.46949 * 209.99598 * 9 7 5 12 12 H 1.48495 * 109.47230 * 329.99660 * 9 7 5 13 13 C 1.39034 * 120.00058 * 90.00018 * 3 2 1 14 14 C 1.38930 * 119.64910 * 184.72766 * 13 3 2 15 15 C 1.39435 * 118.95318 * 180.27295 * 14 13 3 16 16 C 1.48386 * 120.86618 * 180.02562 * 15 14 13 17 17 C 1.39346 * 120.11779 * 359.70291 * 16 15 14 18 18 C 1.38014 * 119.87393 * 179.76669 * 17 16 15 19 19 C 1.38322 * 120.12306 * 0.51303 * 18 17 16 20 20 C 1.38324 * 120.24367 * 359.74250 * 19 18 17 21 21 C 1.38011 * 120.12380 * 359.97438 * 20 19 18 22 22 C 1.39978 * 118.27537 * 0.02562 * 15 14 13 23 23 C 1.37795 * 119.18717 * 359.97438 * 22 15 14 24 24 N 1.32018 * 120.98350 * 0.02562 * 23 22 15 25 25 H 1.08996 * 109.46760 * 299.99844 * 1 2 3 26 26 H 1.08998 * 109.47014 * 59.99963 * 1 2 3 27 27 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47209 * 240.00040 * 2 1 3 29 29 H 1.09002 * 109.47475 * 120.00173 * 2 1 3 30 30 H 1.08996 * 109.47103 * 29.99807 * 4 3 2 31 31 H 1.09001 * 109.46698 * 149.99853 * 4 3 2 32 32 H 0.97005 * 119.99854 * 180.02562 * 8 7 5 33 33 H 1.07997 * 120.52300 * 0.25281 * 14 13 3 34 34 H 1.08000 * 120.05769 * 359.97438 * 17 16 15 35 35 H 1.08008 * 119.93741 * 180.27184 * 18 17 16 36 36 H 1.08000 * 119.87578 * 179.76773 * 19 18 17 37 37 H 1.08008 * 119.93554 * 179.97438 * 20 19 18 38 38 H 1.07992 * 120.06269 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.40491 * 179.97438 * 22 15 14 40 40 H 1.08004 * 119.51203 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8774 8 7 5.3916 2.1842 -3.2568 9 14 3.0135 3.4370 -3.9280 10 1 3.1173 4.8570 -3.5057 11 1 3.4066 3.3150 -5.3548 12 1 1.6137 2.9713 -3.7586 13 6 2.2501 2.0366 1.2041 14 6 2.6182 3.3762 1.1976 15 6 2.8526 4.0177 2.4132 16 6 3.2473 5.4475 2.4558 17 6 3.3948 6.1677 1.2721 18 6 3.7573 7.4986 1.3178 19 6 3.9845 8.1148 2.5351 20 6 3.8447 7.4032 3.7130 21 6 3.4769 6.0734 3.6794 22 6 2.7060 3.2779 3.5925 23 6 2.3377 1.9525 3.5128 24 7 2.1233 1.3757 2.3448 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 5.7179 2.5753 -4.0824 33 1 2.7215 3.9122 0.2657 34 1 3.2224 5.6862 0.3208 35 1 3.8677 8.0590 0.4010 36 1 4.2717 9.1555 2.5660 37 1 4.0237 7.8892 4.6608 38 1 3.3677 5.5189 4.5996 39 1 2.8795 3.7403 4.5529 40 1 2.2227 1.3769 4.4194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = 69.030982 kcal Electronic energy + Delta-G solvation = -21400.155570 eV Core-core repulsion = 18372.790688 eV Total energy + Delta-G solvation = -3027.364882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.99291 -38.66846 -36.31458 -33.29359 -32.64045 -31.38314 -30.78783 -29.53867 -29.06802 -26.96566 -24.01796 -23.44785 -22.61791 -21.82933 -21.09147 -19.62161 -17.49478 -16.98484 -16.16523 -16.05180 -15.36935 -14.84122 -14.62739 -14.34378 -14.09692 -13.90552 -13.50303 -13.30068 -12.99783 -12.85235 -12.75723 -12.52671 -12.23560 -11.96164 -11.53837 -11.43342 -11.12566 -10.98365 -10.71162 -10.57219 -10.40483 -10.32315 -10.01100 -9.64376 -9.08942 -8.86616 -8.86208 -8.69264 -8.10807 -6.74850 -6.18877 -4.19550 0.91718 1.49298 1.93259 2.33070 3.16767 3.25366 3.26070 3.76105 3.92417 4.27382 4.57662 4.75632 4.89261 5.02401 5.04783 5.13381 5.19565 5.48470 5.50001 5.58028 5.62339 5.73800 5.82805 5.83230 5.92247 5.94487 6.09107 6.26138 6.30186 6.35730 6.38864 6.45142 6.53455 6.59083 6.63538 6.67834 6.76015 6.98008 7.05158 7.16497 7.46329 7.71199 8.22834 8.39290 8.77942 8.90554 9.40286 10.94100 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.006576 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.033300 B = 4256.878416 C = 6037.163251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 N -0.583 5.583 4 C 0.223 3.777 5 C -0.537 4.537 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.892 5.892 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.423 3.577 14 C -0.216 4.216 15 C 0.027 3.973 16 C -0.041 4.041 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.247 4.247 23 C 0.145 3.855 24 N -0.555 5.555 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 6.932 11.706 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.291 5.291 4 C 0.102 3.898 5 C -0.575 4.575 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.695 3.305 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.186 3.814 14 C -0.241 4.241 15 C 0.019 3.981 16 C -0.041 4.041 17 C -0.118 4.118 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.124 4.124 22 C -0.271 4.271 23 C -0.013 4.013 24 N -0.273 5.273 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.873 5.977 11.279 14.497 hybrid contribution -0.050 1.455 -0.707 1.618 sum -6.923 7.432 10.572 14.660 Atomic orbital electron populations 1.22150 0.97385 1.01029 1.01573 1.21214 0.92793 0.83111 1.02701 1.46732 1.66622 1.13006 1.02735 1.19730 0.97503 0.92370 0.80232 1.21439 0.95278 1.33337 1.07474 0.90451 1.24872 0.94901 0.95894 0.97142 1.69895 1.15067 1.44509 1.23469 0.86964 0.81710 0.81380 0.80419 1.19842 1.20815 1.18902 1.18255 0.88882 0.87959 0.86260 1.21586 1.09028 0.94862 0.98589 1.18780 0.94665 0.91603 0.93043 1.18810 0.99599 0.92262 0.93439 1.21439 0.97845 0.94178 0.98337 1.21121 0.99820 0.94862 0.98005 1.21186 1.00330 0.99788 0.92659 1.21038 1.00755 0.94391 0.98164 1.21226 0.99145 0.94755 0.97249 1.21597 1.11510 0.96291 0.97702 1.22111 0.92910 0.91821 0.94421 1.67131 1.23714 1.38986 0.97505 0.92941 0.93099 0.92471 0.90846 0.90436 0.94820 0.95606 0.92425 0.84376 0.85188 0.85885 0.86274 0.86116 0.85671 0.85951 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.13 2.30 6.19 -4.04 -0.03 2.28 16 3 N -0.58 -12.34 2.57 -175.25 -0.45 -12.79 16 4 C 0.22 5.15 4.07 -5.19 -0.02 5.12 16 5 C -0.54 -14.68 9.94 -34.44 -0.34 -15.02 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 9 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 13 C 0.42 8.74 7.37 -155.03 -1.14 7.60 16 14 C -0.22 -4.30 8.66 -38.88 -0.34 -4.63 16 15 C 0.03 0.46 5.91 -104.62 -0.62 -0.15 16 16 C -0.04 -0.65 5.88 -104.89 -0.62 -1.26 16 17 C -0.10 -1.56 9.45 -39.25 -0.37 -1.93 16 18 C -0.12 -1.59 10.03 -39.63 -0.40 -1.99 16 19 C -0.12 -1.41 10.04 -39.52 -0.40 -1.81 16 20 C -0.13 -1.44 10.03 -39.63 -0.40 -1.84 16 21 C -0.11 -1.38 9.45 -39.25 -0.37 -1.75 16 22 C -0.25 -3.80 9.49 -39.09 -0.37 -4.17 16 23 C 0.15 2.30 11.16 -17.63 -0.20 2.11 16 24 N -0.55 -10.54 9.06 -12.52 -0.11 -10.65 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.08 1.41 7.30 -51.93 -0.38 1.04 16 30 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 31 H 0.03 0.59 5.41 -51.93 -0.28 0.31 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.14 2.85 4.30 -52.49 -0.23 2.62 16 34 H 0.13 2.13 6.29 -52.49 -0.33 1.80 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 39 H 0.12 1.50 6.34 -52.49 -0.33 1.16 16 40 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -30.65 331.34 -10.00 -40.65 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.22 Total: 5.63 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -5.32 Total: -17.60 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.21 Total: -49.20 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.65 -10.00 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.681 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds