Wall clock time and date at job start Tue Mar 31 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46795 * 127.43945 * 3 2 1 5 5 C 1.53006 * 109.46770 * 247.43152 * 3 2 1 6 6 C 1.53001 * 109.47349 * 300.00077 * 5 3 2 7 7 N 1.46490 * 109.47443 * 7.43395 * 3 2 1 8 8 C 1.39404 * 120.00354 * 59.52389 * 7 3 2 9 9 C 1.38732 * 120.22174 * 353.81220 * 8 7 3 10 10 C 1.38461 * 120.14990 * 179.97438 * 9 8 7 11 11 C 1.37984 * 120.70423 * 359.97438 * 10 9 8 12 12 C 1.39159 * 120.13669 * 0.02562 * 11 10 9 13 13 N 1.38144 * 132.74760 * 179.97438 * 12 11 10 14 14 H 0.96996 * 124.69783 * 359.97438 * 13 12 11 15 15 C 1.35655 * 110.60327 * 180.02562 * 13 12 11 16 16 C 1.38966 * 109.25058 * 359.97438 * 15 13 12 17 17 C 1.40901 * 126.93442 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99631 * 157.56438 * 17 16 15 19 19 C 1.39676 * 120.00086 * 337.56453 * 17 16 15 20 20 N 1.31078 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99696 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47477 * 60.00099 * 21 19 17 23 23 H 1.48502 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47485 * 299.99880 * 21 19 17 25 25 C 1.39768 * 120.23425 * 173.53392 * 8 7 3 26 26 H 4.44646 * 5.63292 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46800 * 292.49718 * 4 3 2 28 28 H 1.08997 * 109.47196 * 172.50368 * 4 3 2 29 29 H 1.08997 * 109.47681 * 52.49678 * 4 3 2 30 30 H 1.08997 * 109.47157 * 60.00696 * 5 3 2 31 31 H 1.09003 * 109.46731 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.46964 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47496 * 300.00412 * 6 5 3 34 34 H 1.09007 * 109.46593 * 60.00088 * 6 5 3 35 35 H 0.97006 * 120.00030 * 239.52254 * 7 3 2 36 36 H 1.07994 * 119.92931 * 359.97438 * 9 8 7 37 37 H 1.07996 * 119.64268 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.92703 * 179.97438 * 11 10 9 39 39 H 1.08000 * 125.37479 * 179.97438 * 15 13 12 40 40 H 0.96999 * 120.00074 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.8778 -1.1453 5 6 3.1557 0.5545 1.3321 6 6 2.6450 1.9847 1.5187 7 7 3.1350 -1.3686 -0.1787 8 6 2.7905 -2.0882 -1.3218 9 6 1.8835 -1.5630 -2.2307 10 6 1.5427 -2.2788 -3.3659 11 6 2.0972 -3.5186 -3.6099 12 6 3.0091 -4.0651 -2.7120 13 7 3.7087 -5.2561 -2.6942 14 1 3.6496 -5.9414 -3.3781 15 6 4.4888 -5.3351 -1.5872 16 6 4.3266 -4.1817 -0.8292 17 6 4.9601 -3.8746 0.3913 18 1 5.0524 -2.8462 0.7080 19 6 5.4688 -4.9002 1.1916 20 7 5.3572 -6.1483 0.8070 21 14 6.3080 -4.4930 2.8100 22 1 5.3522 -3.7848 3.6989 23 1 6.7554 -5.7483 3.4651 24 1 7.4831 -3.6222 2.5530 25 6 3.3608 -3.3413 -1.5631 26 1 -1.0501 -0.0003 0.0001 27 1 2.9061 0.4117 -2.0985 28 1 4.2372 0.9866 -1.0662 29 1 2.6864 1.8599 -1.0874 30 1 2.7927 -0.0703 2.1481 31 1 4.2457 0.5554 1.3319 32 1 3.0078 2.3790 2.4679 33 1 3.0080 2.6095 0.7027 34 1 1.5550 1.9841 1.5187 35 1 3.6986 -1.7746 0.4985 36 1 1.4421 -0.5936 -2.0525 37 1 0.8355 -1.8623 -4.0678 38 1 1.8221 -4.0662 -4.4992 39 1 5.1341 -6.1635 -1.3349 40 1 5.7101 -6.8605 1.3629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169701901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:48 Heat of formation + Delta-G solvation = 106.898534 kcal Electronic energy + Delta-G solvation = -21999.508443 eV Core-core repulsion = 18973.785622 eV Total energy + Delta-G solvation = -3025.722822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79227 -38.31195 -35.40130 -33.64564 -32.55843 -31.75993 -29.91337 -28.52330 -27.88884 -27.21219 -24.84139 -23.97920 -21.78343 -21.04301 -20.40374 -19.38869 -17.61160 -17.16768 -15.78223 -15.67226 -15.29390 -14.96769 -14.58410 -14.34707 -13.73979 -13.45744 -13.24668 -12.91830 -12.63916 -12.49910 -11.98006 -11.85668 -11.65750 -11.37893 -11.27121 -11.14191 -11.12827 -10.86580 -10.82944 -10.69184 -10.45773 -10.08959 -9.81177 -9.75910 -9.58390 -9.27405 -9.04438 -7.42673 -6.91655 -6.45573 -6.00107 -3.96479 2.51266 2.81167 3.05596 3.12411 3.14223 3.16841 3.18938 4.09379 4.24224 4.29980 4.53078 4.67359 4.97183 5.00111 5.13764 5.39192 5.55886 5.62466 5.68176 5.79256 5.87239 5.99800 6.02514 6.08908 6.17802 6.19278 6.23773 6.38554 6.53190 6.57734 6.72424 6.90780 7.17767 7.25104 7.30236 7.55886 7.59399 7.86246 7.92517 7.96827 8.27448 8.44439 8.64997 8.76220 9.07015 9.17609 9.27944 10.56640 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.007696 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.487998 B = 3637.197849 C = 5482.091459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.289 3.711 4 C -0.167 4.167 5 C -0.123 4.123 6 C -0.148 4.148 7 N -0.734 5.734 8 C 0.276 3.724 9 C -0.273 4.273 10 C -0.071 4.071 11 C -0.207 4.207 12 C 0.118 3.882 13 N -0.589 5.589 14 H 0.393 0.607 15 C -0.088 4.088 16 C 0.035 3.965 17 C -0.433 4.433 18 H 0.066 0.934 19 C 0.063 3.937 20 N -0.834 5.834 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.183 4.183 26 H 0.212 0.788 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.171 0.829 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 10.206 -1.251 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.167 4.167 3 C 0.201 3.799 4 C -0.225 4.225 5 C -0.161 4.161 6 C -0.206 4.206 7 N -0.367 5.367 8 C 0.173 3.827 9 C -0.297 4.297 10 C -0.091 4.091 11 C -0.230 4.230 12 C 0.005 3.995 13 N -0.190 5.190 14 H 0.226 0.774 15 C -0.212 4.212 16 C 0.030 3.970 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.147 4.147 20 N -0.464 5.464 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.193 4.193 26 H 0.229 0.771 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.188 0.812 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.270 10.001 -1.143 10.934 hybrid contribution 0.215 -0.580 0.738 0.962 sum -4.056 9.421 -0.405 10.265 Atomic orbital electron populations 1.24775 0.95728 1.00612 1.01954 1.23417 0.94504 0.99790 0.99031 1.17033 0.82926 0.84272 0.95656 1.22425 1.01512 0.98931 0.99659 1.21724 1.01509 0.97164 0.95654 1.21774 1.01520 0.95617 1.01641 1.44973 1.56810 1.12313 1.22566 1.17107 0.91094 0.88777 0.85728 1.20295 1.07600 1.02928 0.98909 1.20133 0.98686 0.93811 0.96500 1.19545 1.04569 0.98282 1.00630 1.17900 0.96992 0.87717 0.96844 1.41432 1.39564 1.15667 1.22330 0.77404 1.22512 1.05295 1.04784 0.88579 1.17859 0.94459 0.91234 0.93446 1.18461 1.33004 0.92994 1.02215 0.91627 1.25578 0.95424 0.94666 0.99078 1.69700 1.39481 0.99662 1.37576 0.86399 0.80004 0.78307 0.82052 1.19549 1.20748 1.19444 1.18995 1.05302 0.95616 0.99344 0.77102 0.90144 0.91580 0.91995 0.91028 0.90337 0.92490 0.92157 0.92425 0.74917 0.86800 0.88022 0.88705 0.81196 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.08 19.05 29.55 0.56 -2.52 16 2 C -0.17 -2.66 7.92 -37.12 -0.29 -2.95 16 3 C 0.29 4.58 0.79 -134.61 -0.11 4.47 16 4 C -0.17 -2.39 7.71 37.16 0.29 -2.11 16 5 C -0.12 -1.64 5.08 -26.73 -0.14 -1.78 16 6 C -0.15 -1.60 9.31 37.16 0.35 -1.25 16 7 N -0.73 -14.49 5.22 -48.49 -0.25 -14.74 16 8 C 0.28 6.10 6.23 -83.66 -0.52 5.58 16 9 C -0.27 -5.45 7.25 -39.32 -0.29 -5.74 16 10 C -0.07 -1.37 10.00 -39.59 -0.40 -1.77 16 11 C -0.21 -4.22 10.07 -39.33 -0.40 -4.61 16 12 C 0.12 2.74 7.23 -83.92 -0.61 2.14 16 13 N -0.59 -13.19 5.99 -9.80 -0.06 -13.25 16 14 H 0.39 7.26 8.96 -40.82 -0.37 6.89 16 15 C -0.09 -2.25 10.77 -15.59 -0.17 -2.42 16 16 C 0.04 0.94 5.97 -104.81 -0.63 0.32 16 17 C -0.43 -11.42 8.71 -38.04 -0.33 -11.75 16 18 H 0.07 1.63 5.85 -52.48 -0.31 1.32 16 19 C 0.06 1.62 5.47 -17.34 -0.09 1.52 16 20 N -0.83 -21.98 10.83 55.54 0.60 -21.37 16 21 Si 0.91 19.33 29.56 -169.99 -5.02 14.31 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 C -0.18 -4.54 6.27 -104.76 -0.66 -5.20 16 26 H 0.21 2.29 7.80 -54.08 -0.42 1.87 16 27 H 0.08 1.28 5.23 -51.93 -0.27 1.01 16 28 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.06 0.74 6.83 -51.93 -0.35 0.39 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 6.60 -51.93 -0.34 0.26 16 34 H 0.06 0.64 7.23 -51.92 -0.38 0.27 16 35 H 0.41 8.53 5.57 -40.82 -0.23 8.31 16 36 H 0.11 2.09 4.13 -52.49 -0.22 1.88 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.17 4.46 6.40 -52.49 -0.34 4.12 16 40 H 0.27 6.68 8.30 -40.82 -0.34 6.35 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -29.30 322.34 -8.19 -37.49 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -4.89 Total: 20.77 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -3.42 Total: -28.07 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.29 Total: -49.36 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.30 -8.19 -37.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.391 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds