Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46795 * 127.43945 * 3 2 1 5 5 C 1.53006 * 109.46770 * 247.43152 * 3 2 1 6 6 C 1.53001 * 109.47349 * 300.00077 * 5 3 2 7 7 N 1.46490 * 109.47443 * 7.43395 * 3 2 1 8 8 C 1.39404 * 120.00354 * 59.52389 * 7 3 2 9 9 C 1.38732 * 120.22174 * 353.81220 * 8 7 3 10 10 C 1.38461 * 120.14990 * 179.97438 * 9 8 7 11 11 C 1.37984 * 120.70423 * 359.97438 * 10 9 8 12 12 C 1.39159 * 120.13669 * 0.02562 * 11 10 9 13 13 N 1.38144 * 132.74760 * 179.97438 * 12 11 10 14 14 H 0.96996 * 124.69783 * 359.97438 * 13 12 11 15 15 C 1.35655 * 110.60327 * 180.02562 * 13 12 11 16 16 C 1.38966 * 109.25058 * 359.97438 * 15 13 12 17 17 C 1.40901 * 126.93442 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99631 * 157.56438 * 17 16 15 19 19 C 1.39676 * 120.00086 * 337.56453 * 17 16 15 20 20 N 1.31078 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99696 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47477 * 60.00099 * 21 19 17 23 23 H 1.48502 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47485 * 299.99880 * 21 19 17 25 25 C 1.39768 * 120.23425 * 173.53392 * 8 7 3 26 26 H 4.44646 * 5.63292 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46800 * 292.49718 * 4 3 2 28 28 H 1.08997 * 109.47196 * 172.50368 * 4 3 2 29 29 H 1.08997 * 109.47681 * 52.49678 * 4 3 2 30 30 H 1.08997 * 109.47157 * 60.00696 * 5 3 2 31 31 H 1.09003 * 109.46731 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.46964 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47496 * 300.00412 * 6 5 3 34 34 H 1.09007 * 109.46593 * 60.00088 * 6 5 3 35 35 H 0.97006 * 120.00030 * 239.52254 * 7 3 2 36 36 H 1.07994 * 119.92931 * 359.97438 * 9 8 7 37 37 H 1.07996 * 119.64268 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.92703 * 179.97438 * 11 10 9 39 39 H 1.08000 * 125.37479 * 179.97438 * 15 13 12 40 40 H 0.96999 * 120.00074 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.8778 -1.1453 5 6 3.1557 0.5545 1.3321 6 6 2.6450 1.9847 1.5187 7 7 3.1350 -1.3686 -0.1787 8 6 2.7905 -2.0882 -1.3218 9 6 1.8835 -1.5630 -2.2307 10 6 1.5427 -2.2788 -3.3659 11 6 2.0972 -3.5186 -3.6099 12 6 3.0091 -4.0651 -2.7120 13 7 3.7087 -5.2561 -2.6942 14 1 3.6496 -5.9414 -3.3781 15 6 4.4888 -5.3351 -1.5872 16 6 4.3266 -4.1817 -0.8292 17 6 4.9601 -3.8746 0.3913 18 1 5.0524 -2.8462 0.7080 19 6 5.4688 -4.9002 1.1916 20 7 5.3572 -6.1483 0.8070 21 14 6.3080 -4.4930 2.8100 22 1 5.3522 -3.7848 3.6989 23 1 6.7554 -5.7483 3.4651 24 1 7.4831 -3.6222 2.5530 25 6 3.3608 -3.3413 -1.5631 26 1 -1.0501 -0.0003 0.0001 27 1 2.9061 0.4117 -2.0985 28 1 4.2372 0.9866 -1.0662 29 1 2.6864 1.8599 -1.0874 30 1 2.7927 -0.0703 2.1481 31 1 4.2457 0.5554 1.3319 32 1 3.0078 2.3790 2.4679 33 1 3.0080 2.6095 0.7027 34 1 1.5550 1.9841 1.5187 35 1 3.6986 -1.7746 0.4985 36 1 1.4421 -0.5936 -2.0525 37 1 0.8355 -1.8623 -4.0678 38 1 1.8221 -4.0662 -4.4992 39 1 5.1341 -6.1635 -1.3349 40 1 5.7101 -6.8605 1.3629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169701901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = 91.046578 kcal Electronic energy + Delta-G solvation = -22000.195836 eV Core-core repulsion = 18973.785622 eV Total energy + Delta-G solvation = -3026.410214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46062 -39.69218 -36.95540 -35.45037 -34.08543 -32.86839 -31.54252 -29.91780 -29.46059 -28.85023 -26.56559 -25.28309 -23.00211 -22.68561 -21.94817 -21.23549 -19.13525 -18.54733 -17.64102 -17.18854 -16.77368 -16.26242 -16.10991 -15.83866 -15.24366 -14.92080 -14.55277 -14.42401 -14.21120 -14.11731 -13.22128 -13.10427 -12.98652 -12.96620 -12.89236 -12.79428 -12.52970 -12.35911 -12.08786 -11.99363 -11.78943 -11.65172 -11.51093 -11.21607 -11.08297 -10.88670 -10.65486 -9.22011 -8.65405 -8.36531 -7.70992 -5.93211 0.84737 1.14842 1.41353 1.43186 1.51133 1.83398 1.98741 2.29160 2.39377 2.87153 3.00537 3.24421 3.44893 3.68581 3.88980 4.05863 4.36851 4.41683 4.51203 4.56274 4.65155 4.73614 4.76746 4.91384 4.94569 5.06613 5.08223 5.12000 5.16482 5.24290 5.35583 5.38947 5.41844 5.48384 5.64129 5.82274 5.99224 6.07018 6.14857 6.53804 6.75587 6.79465 6.90704 7.03677 7.17050 7.28241 7.46771 8.66251 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.007696 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.487998 B = 3637.197849 C = 5482.091459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.206 4.206 3 C 0.282 3.718 4 C -0.162 4.162 5 C -0.122 4.122 6 C -0.140 4.140 7 N -0.739 5.739 8 C 0.264 3.736 9 C -0.269 4.269 10 C -0.062 4.062 11 C -0.217 4.217 12 C 0.108 3.892 13 N -0.585 5.585 14 H 0.408 0.592 15 C -0.106 4.106 16 C 0.001 3.999 17 C -0.458 4.458 18 H 0.070 0.930 19 C 0.017 3.983 20 N -0.864 5.864 21 Si 0.975 3.025 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.224 4.224 26 H 0.244 0.756 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.400 0.600 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 12.439 -1.369 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.207 4.207 3 C 0.195 3.805 4 C -0.219 4.219 5 C -0.160 4.160 6 C -0.198 4.198 7 N -0.369 5.369 8 C 0.160 3.840 9 C -0.294 4.294 10 C -0.081 4.081 11 C -0.240 4.240 12 C -0.004 4.004 13 N -0.188 5.188 14 H 0.244 0.756 15 C -0.231 4.231 16 C -0.004 4.004 17 C -0.491 4.491 18 H 0.087 0.913 19 C -0.190 4.190 20 N -0.495 5.495 21 Si 0.798 3.202 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.234 4.234 26 H 0.261 0.739 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.751 12.257 -1.283 13.600 hybrid contribution 0.547 -1.191 0.704 1.487 sum -5.205 11.066 -0.579 12.243 Atomic orbital electron populations 1.25610 0.96595 0.98722 1.00334 1.23595 0.94984 1.01498 1.00613 1.17331 0.83423 0.82411 0.97305 1.22374 1.01788 0.99727 0.98053 1.21750 1.01612 0.98573 0.94031 1.21736 1.01311 0.93782 1.02970 1.45183 1.56465 1.13756 1.21535 1.17358 0.91366 0.88375 0.86937 1.20595 1.06619 1.03603 0.98556 1.20651 0.98063 0.92969 0.96441 1.19893 1.03977 0.99030 1.01111 1.18363 0.97296 0.87624 0.97105 1.41264 1.39256 1.16265 1.22036 0.75577 1.22300 1.06318 1.04429 0.90005 1.18290 0.95550 0.92414 0.94193 1.18762 1.33923 0.93564 1.02878 0.91250 1.26436 0.95788 0.94374 1.02429 1.69813 1.40330 1.00494 1.38859 0.85336 0.78990 0.78196 0.77654 1.18947 1.20242 1.18698 1.19324 1.06409 0.97333 1.00324 0.73950 0.91789 0.91511 0.89373 0.92232 0.90190 0.90941 0.91024 0.92631 0.76150 0.84922 0.83983 0.85859 0.82646 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.06 19.05 74.32 1.42 -3.65 16 2 C -0.21 -6.18 7.92 31.12 0.25 -5.93 16 3 C 0.28 8.63 0.79 1.80 0.00 8.63 16 4 C -0.16 -4.36 7.71 71.98 0.55 -3.80 16 5 C -0.12 -3.14 5.08 30.60 0.16 -2.98 16 6 C -0.14 -2.71 9.31 71.98 0.67 -2.04 16 7 N -0.74 -29.44 5.22 -307.34 -1.61 -31.05 16 8 C 0.26 11.69 6.23 38.43 0.24 11.93 16 9 C -0.27 -10.28 7.25 22.44 0.16 -10.11 16 10 C -0.06 -2.18 10.00 22.26 0.22 -1.96 16 11 C -0.22 -8.41 10.07 22.43 0.23 -8.19 16 12 C 0.11 5.06 7.23 38.86 0.28 5.34 16 13 N -0.59 -26.89 5.99 -184.92 -1.11 -28.00 16 14 H 0.41 15.38 8.96 -92.71 -0.83 14.55 16 15 C -0.11 -5.71 10.77 84.28 0.91 -4.81 16 16 C 0.00 0.06 5.97 -19.99 -0.12 -0.05 16 17 C -0.46 -25.16 8.71 23.27 0.20 -24.96 16 18 H 0.07 3.60 5.85 -2.91 -0.02 3.59 16 19 C 0.02 0.91 5.47 85.15 0.47 1.37 16 20 N -0.86 -47.31 10.83 21.79 0.24 -47.07 16 21 Si 0.98 40.48 29.56 68.60 2.03 42.50 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 C -0.22 -11.43 6.27 -19.95 -0.13 -11.56 16 26 H 0.24 4.29 7.80 -4.41 -0.03 4.25 16 27 H 0.06 1.93 5.23 -2.39 -0.01 1.92 16 28 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 29 H 0.09 1.87 6.83 -2.39 -0.02 1.86 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.21 6.60 -2.39 -0.02 1.20 16 34 H 0.05 1.10 7.23 -2.38 -0.02 1.08 16 35 H 0.40 17.23 5.57 -92.70 -0.52 16.71 16 36 H 0.13 4.53 4.13 -2.91 -0.01 4.52 16 37 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.16 8.68 6.40 -2.91 -0.02 8.66 16 40 H 0.27 13.96 8.30 -92.71 -0.77 13.19 16 Total: -1.00 -65.50 322.34 4.79 -60.71 By element: Atomic # 1 Polarization: 55.94 SS G_CDS: -0.26 Total: 55.68 kcal Atomic # 6 Polarization: -58.27 SS G_CDS: 5.51 Total: -52.77 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -2.48 Total: -106.12 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -65.50 4.79 -60.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.756 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds