Wall clock time and date at job start Tue Mar 31 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47434 * 342.80727 * 3 2 1 5 5 C 1.53005 * 109.46838 * 222.81040 * 3 2 1 6 6 C 1.53004 * 109.47014 * 295.02134 * 5 3 2 7 7 N 1.46497 * 109.47220 * 102.81447 * 3 2 1 8 8 C 1.39402 * 120.00384 * 184.55731 * 7 3 2 9 9 C 1.38733 * 120.22618 * 354.49591 * 8 7 3 10 10 C 1.38452 * 120.15422 * 179.72741 * 9 8 7 11 11 C 1.37991 * 120.70360 * 0.25717 * 10 9 8 12 12 C 1.39154 * 120.13331 * 0.02562 * 11 10 9 13 13 N 1.38145 * 132.74681 * 179.97438 * 12 11 10 14 14 H 0.97000 * 124.69681 * 359.97101 * 13 12 11 15 15 C 1.35661 * 110.60839 * 180.02562 * 13 12 11 16 16 C 1.38965 * 109.24308 * 359.97438 * 15 13 12 17 17 C 1.40906 * 126.93174 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00243 * 185.04582 * 17 16 15 19 19 C 1.39674 * 119.99891 * 5.04333 * 17 16 15 20 20 N 1.31081 * 120.00470 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47153 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47061 * 119.99813 * 21 19 17 24 24 H 1.48498 * 109.47442 * 240.00510 * 21 19 17 25 25 C 1.39767 * 120.23338 * 174.75391 * 8 7 3 26 26 H 4.44643 * 5.63307 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46935 * 185.00439 * 4 3 2 28 28 H 1.08993 * 109.47407 * 305.00562 * 4 3 2 29 29 H 1.09006 * 109.46877 * 65.00480 * 4 3 2 30 30 H 1.08998 * 109.47354 * 55.02030 * 5 3 2 31 31 H 1.08999 * 109.47312 * 175.02704 * 5 3 2 32 32 H 1.08998 * 109.47243 * 300.00608 * 6 5 3 33 33 H 1.09008 * 109.46700 * 60.00000 * 6 5 3 34 34 H 1.08996 * 109.47267 * 180.02562 * 6 5 3 35 35 H 0.97004 * 119.99571 * 4.54562 * 7 3 2 36 36 H 1.08001 * 119.92014 * 0.02562 * 9 8 7 37 37 H 1.07995 * 119.64525 * 180.23467 * 10 9 8 38 38 H 1.08000 * 119.93129 * 180.02562 * 11 10 9 39 39 H 1.07994 * 125.38182 * 180.02562 * 15 13 12 40 40 H 0.96996 * 120.00562 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3771 0.4264 5 6 3.1554 1.0592 0.9803 6 6 2.7495 2.4492 0.4863 7 7 3.1342 0.3072 -1.3468 8 6 4.5011 0.2711 -1.6177 9 6 5.4110 0.0579 -0.5924 10 6 6.7679 0.0167 -0.8640 11 6 7.2345 0.1913 -2.1509 12 6 6.3405 0.4123 -3.1941 13 7 6.5130 0.6166 -4.5494 14 1 7.3717 0.6352 -5.0001 15 6 5.3152 0.7889 -5.1626 16 6 4.3001 0.7018 -4.2176 17 6 2.9155 0.8244 -4.4485 18 1 2.2267 0.8186 -3.6167 19 6 2.4339 0.9536 -5.7532 20 7 3.2698 0.9603 -6.7629 21 14 0.5983 1.1154 -6.0594 22 1 -0.1249 1.0794 -4.7628 23 1 0.3223 2.4040 -6.7439 24 1 0.1381 -0.0080 -6.9146 25 6 4.9648 0.4547 -2.9234 26 1 -1.0498 -0.0003 0.0003 27 1 4.2430 -1.3513 0.5124 28 1 2.7221 -1.6435 1.3898 29 1 2.8687 -2.1181 -0.3194 30 1 2.7212 0.8821 1.9643 31 1 4.2418 1.0001 1.0466 32 1 3.1837 2.6262 -0.4976 33 1 1.6631 2.5083 0.4200 34 1 3.1128 3.2033 1.1844 35 1 2.5061 0.5352 -2.0501 36 1 5.0596 -0.0810 0.4194 37 1 7.4687 -0.1536 -0.0602 38 1 8.2956 0.1563 -2.3488 39 1 5.1729 0.9650 -6.2186 40 1 2.9353 1.0496 -7.6689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169701902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:52 Heat of formation + Delta-G solvation = 119.357327 kcal Electronic energy + Delta-G solvation = -22182.032988 eV Core-core repulsion = 19156.850421 eV Total energy + Delta-G solvation = -3025.182568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86908 -38.35228 -35.26965 -33.62393 -32.42403 -31.65449 -30.06359 -28.95855 -28.00802 -27.17042 -24.69379 -23.64983 -21.92150 -20.98458 -20.61217 -19.28397 -17.71190 -17.29042 -15.83286 -15.74231 -15.26551 -14.70742 -14.41845 -14.37183 -13.73480 -13.57568 -13.07228 -12.90162 -12.64218 -12.50131 -12.06705 -11.90005 -11.41814 -11.33381 -11.23299 -11.20733 -11.06149 -10.93226 -10.70616 -10.61994 -10.28925 -10.06466 -9.86828 -9.69484 -9.52841 -9.46664 -9.02857 -7.45531 -6.91423 -6.46599 -6.03640 -3.96277 2.51442 2.77854 2.81717 2.99815 3.09453 3.16785 3.20864 4.08566 4.27632 4.28771 4.41461 4.69979 4.95090 5.04620 5.37007 5.51359 5.65140 5.77940 5.78790 5.83495 5.85630 5.98136 6.10374 6.18869 6.20550 6.25035 6.44962 6.49905 6.55971 6.64448 6.74007 6.89601 7.18298 7.20115 7.27027 7.56593 7.58037 7.72944 7.93367 7.96122 8.27111 8.44088 8.63808 8.77734 9.08096 9.18385 9.30909 10.50994 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.008350 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.122331 B = 3352.516846 C = 5200.738693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.292 3.708 4 C -0.172 4.172 5 C -0.140 4.140 6 C -0.147 4.147 7 N -0.733 5.733 8 C 0.283 3.717 9 C -0.291 4.291 10 C -0.070 4.070 11 C -0.209 4.209 12 C 0.119 3.881 13 N -0.589 5.589 14 H 0.393 0.607 15 C -0.103 4.103 16 C 0.027 3.973 17 C -0.417 4.417 18 H 0.065 0.935 19 C 0.057 3.943 20 N -0.832 5.832 21 Si 0.909 3.091 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.186 4.186 26 H 0.217 0.783 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.408 0.592 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.188 0.812 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -0.975 10.555 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.205 3.795 4 C -0.230 4.230 5 C -0.178 4.178 6 C -0.204 4.204 7 N -0.367 5.367 8 C 0.180 3.820 9 C -0.316 4.316 10 C -0.090 4.090 11 C -0.232 4.232 12 C 0.006 3.994 13 N -0.189 5.189 14 H 0.226 0.774 15 C -0.227 4.227 16 C 0.022 3.978 17 C -0.450 4.450 18 H 0.083 0.917 19 C -0.153 4.153 20 N -0.463 5.463 21 Si 0.736 3.264 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.196 4.196 26 H 0.234 0.766 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.248 0.752 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.204 0.796 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.367 -0.975 10.318 10.371 hybrid contribution -0.963 0.127 -0.778 1.244 sum -1.330 -0.848 9.541 9.670 Atomic orbital electron populations 1.24851 0.95765 1.01600 0.99231 1.22897 0.93945 0.99517 1.00956 1.16995 0.82411 0.94943 0.85171 1.22509 1.03865 0.95510 1.01114 1.22228 1.03071 0.95017 0.97502 1.21681 1.00880 0.95706 1.02136 1.44989 1.05057 1.77047 1.09562 1.17066 0.82509 0.91148 0.91302 1.20484 0.92695 1.20919 0.97460 1.20136 0.94453 0.99697 0.94676 1.19547 0.96488 1.15328 0.91842 1.17932 0.94070 1.02916 0.84510 1.41568 1.08464 1.63690 1.05175 0.77441 1.23204 0.81117 1.18723 0.99654 1.17935 0.92589 0.99912 0.87368 1.18599 0.90915 1.43543 0.91957 0.91677 1.25568 0.99348 0.94558 0.95783 1.69490 1.35094 1.42025 0.99671 0.86220 0.83099 0.78157 0.78960 1.18996 1.20363 1.20379 1.18900 0.93144 1.14900 0.92646 0.76587 0.89083 0.92307 0.91854 0.91868 0.88928 0.91473 0.93362 0.93232 0.75152 0.85959 0.87941 0.88757 0.79557 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 19.25 29.55 0.57 -2.14 16 2 C -0.17 -2.72 10.85 -37.13 -0.40 -3.12 16 3 C 0.29 4.67 0.68 -134.61 -0.09 4.58 16 4 C -0.17 -2.51 8.15 37.16 0.30 -2.21 16 5 C -0.14 -1.99 4.68 -26.73 -0.13 -2.12 16 6 C -0.15 -2.19 9.51 37.16 0.35 -1.84 16 7 N -0.73 -14.33 4.25 -48.49 -0.21 -14.54 16 8 C 0.28 5.99 6.26 -83.66 -0.52 5.47 16 9 C -0.29 -5.37 7.07 -39.32 -0.28 -5.65 16 10 C -0.07 -1.26 10.00 -39.59 -0.40 -1.65 16 11 C -0.21 -4.10 10.07 -39.33 -0.40 -4.50 16 12 C 0.12 2.70 7.23 -83.92 -0.61 2.10 16 13 N -0.59 -13.06 5.99 -9.80 -0.06 -13.12 16 14 H 0.39 7.21 8.96 -40.82 -0.37 6.84 16 15 C -0.10 -2.64 10.88 -15.59 -0.17 -2.81 16 16 C 0.03 0.72 6.10 -104.81 -0.64 0.08 16 17 C -0.42 -11.09 9.06 -38.04 -0.34 -11.43 16 18 H 0.07 1.67 5.21 -52.49 -0.27 1.39 16 19 C 0.06 1.47 5.49 -17.34 -0.10 1.38 16 20 N -0.83 -21.70 10.36 55.54 0.58 -21.13 16 21 Si 0.91 19.64 29.56 -169.99 -5.02 14.61 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 25 C -0.19 -4.53 6.27 -104.76 -0.66 -5.18 16 26 H 0.22 2.14 7.80 -54.10 -0.42 1.71 16 27 H 0.09 1.31 4.66 -51.93 -0.24 1.07 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.32 4.86 -51.93 -0.25 1.07 16 32 H 0.07 1.18 7.47 -51.93 -0.39 0.79 16 33 H 0.05 0.71 7.38 -51.92 -0.38 0.33 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.41 8.77 5.33 -40.82 -0.22 8.55 16 36 H 0.12 1.94 3.12 -52.49 -0.16 1.77 16 37 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.19 4.93 5.72 -52.49 -0.30 4.63 16 40 H 0.27 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -28.58 320.52 -8.06 -36.64 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -4.68 Total: 21.74 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -3.50 Total: -29.04 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.31 Total: -48.79 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.58 -8.06 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.999 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds