Wall clock time and date at job start Tue Mar 31 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47434 * 342.80727 * 3 2 1 5 5 C 1.53005 * 109.46838 * 222.81040 * 3 2 1 6 6 C 1.53004 * 109.47014 * 295.02134 * 5 3 2 7 7 N 1.46497 * 109.47220 * 102.81447 * 3 2 1 8 8 C 1.39402 * 120.00384 * 184.55731 * 7 3 2 9 9 C 1.38733 * 120.22618 * 354.49591 * 8 7 3 10 10 C 1.38452 * 120.15422 * 179.72741 * 9 8 7 11 11 C 1.37991 * 120.70360 * 0.25717 * 10 9 8 12 12 C 1.39154 * 120.13331 * 0.02562 * 11 10 9 13 13 N 1.38145 * 132.74681 * 179.97438 * 12 11 10 14 14 H 0.97000 * 124.69681 * 359.97101 * 13 12 11 15 15 C 1.35661 * 110.60839 * 180.02562 * 13 12 11 16 16 C 1.38965 * 109.24308 * 359.97438 * 15 13 12 17 17 C 1.40906 * 126.93174 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00243 * 185.04582 * 17 16 15 19 19 C 1.39674 * 119.99891 * 5.04333 * 17 16 15 20 20 N 1.31081 * 120.00470 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47153 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47061 * 119.99813 * 21 19 17 24 24 H 1.48498 * 109.47442 * 240.00510 * 21 19 17 25 25 C 1.39767 * 120.23338 * 174.75391 * 8 7 3 26 26 H 4.44643 * 5.63307 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46935 * 185.00439 * 4 3 2 28 28 H 1.08993 * 109.47407 * 305.00562 * 4 3 2 29 29 H 1.09006 * 109.46877 * 65.00480 * 4 3 2 30 30 H 1.08998 * 109.47354 * 55.02030 * 5 3 2 31 31 H 1.08999 * 109.47312 * 175.02704 * 5 3 2 32 32 H 1.08998 * 109.47243 * 300.00608 * 6 5 3 33 33 H 1.09008 * 109.46700 * 60.00000 * 6 5 3 34 34 H 1.08996 * 109.47267 * 180.02562 * 6 5 3 35 35 H 0.97004 * 119.99571 * 4.54562 * 7 3 2 36 36 H 1.08001 * 119.92014 * 0.02562 * 9 8 7 37 37 H 1.07995 * 119.64525 * 180.23467 * 10 9 8 38 38 H 1.08000 * 119.93129 * 180.02562 * 11 10 9 39 39 H 1.07994 * 125.38182 * 180.02562 * 15 13 12 40 40 H 0.96996 * 120.00562 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3771 0.4264 5 6 3.1554 1.0592 0.9803 6 6 2.7495 2.4492 0.4863 7 7 3.1342 0.3072 -1.3468 8 6 4.5011 0.2711 -1.6177 9 6 5.4110 0.0579 -0.5924 10 6 6.7679 0.0167 -0.8640 11 6 7.2345 0.1913 -2.1509 12 6 6.3405 0.4123 -3.1941 13 7 6.5130 0.6166 -4.5494 14 1 7.3717 0.6352 -5.0001 15 6 5.3152 0.7889 -5.1626 16 6 4.3001 0.7018 -4.2176 17 6 2.9155 0.8244 -4.4485 18 1 2.2267 0.8186 -3.6167 19 6 2.4339 0.9536 -5.7532 20 7 3.2698 0.9603 -6.7629 21 14 0.5983 1.1154 -6.0594 22 1 -0.1249 1.0794 -4.7628 23 1 0.3223 2.4040 -6.7439 24 1 0.1381 -0.0080 -6.9146 25 6 4.9648 0.4547 -2.9234 26 1 -1.0498 -0.0003 0.0003 27 1 4.2430 -1.3513 0.5124 28 1 2.7221 -1.6435 1.3898 29 1 2.8687 -2.1181 -0.3194 30 1 2.7212 0.8821 1.9643 31 1 4.2418 1.0001 1.0466 32 1 3.1837 2.6262 -0.4976 33 1 1.6631 2.5083 0.4200 34 1 3.1128 3.2033 1.1844 35 1 2.5061 0.5352 -2.0501 36 1 5.0596 -0.0810 0.4194 37 1 7.4687 -0.1536 -0.0602 38 1 8.2956 0.1563 -2.3488 39 1 5.1729 0.9650 -6.2186 40 1 2.9353 1.0496 -7.6689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169701902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:52 Heat of formation + Delta-G solvation = 104.219238 kcal Electronic energy + Delta-G solvation = -22182.689425 eV Core-core repulsion = 19156.850421 eV Total energy + Delta-G solvation = -3025.839005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47895 -39.77084 -36.80587 -35.44374 -33.88940 -32.83694 -31.52446 -30.46547 -29.57475 -28.84122 -26.51515 -24.86948 -23.24853 -22.54025 -22.19419 -21.07823 -19.10112 -18.76957 -17.65648 -17.30386 -16.66192 -16.15561 -16.06304 -15.62894 -15.23287 -14.92035 -14.64725 -14.36910 -14.32146 -14.07086 -13.32383 -13.22020 -13.07290 -12.98289 -12.92644 -12.60566 -12.42693 -12.33035 -12.23663 -11.89486 -11.71356 -11.41196 -11.38855 -11.32134 -11.18799 -11.05352 -10.57889 -9.23212 -8.59802 -8.37295 -7.69069 -5.92164 0.90288 1.17324 1.37859 1.38530 1.50541 1.63466 1.87635 2.27659 2.37411 2.94251 3.05573 3.27480 3.30663 3.73471 3.87636 4.20559 4.35290 4.41636 4.52988 4.57731 4.71287 4.72615 4.78797 4.91155 5.01695 5.05807 5.06354 5.08343 5.27681 5.28569 5.31466 5.38490 5.41167 5.51986 5.70114 5.93118 6.03297 6.10439 6.15182 6.56262 6.63764 6.82465 6.91704 7.03117 7.16760 7.31179 7.52502 8.61252 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.008350 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.122331 B = 3352.516846 C = 5200.738693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.220 4.220 3 C 0.285 3.715 4 C -0.167 4.167 5 C -0.134 4.134 6 C -0.143 4.143 7 N -0.738 5.738 8 C 0.271 3.729 9 C -0.283 4.283 10 C -0.056 4.056 11 C -0.222 4.222 12 C 0.110 3.890 13 N -0.587 5.587 14 H 0.407 0.593 15 C -0.125 4.125 16 C -0.009 4.009 17 C -0.444 4.444 18 H 0.064 0.936 19 C 0.012 3.988 20 N -0.858 5.858 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.229 4.229 26 H 0.252 0.748 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.394 0.606 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.173 0.827 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -1.394 13.544 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.221 4.221 3 C 0.199 3.801 4 C -0.225 4.225 5 C -0.172 4.172 6 C -0.200 4.200 7 N -0.368 5.368 8 C 0.167 3.833 9 C -0.307 4.307 10 C -0.076 4.076 11 C -0.245 4.245 12 C -0.003 4.003 13 N -0.190 5.190 14 H 0.243 0.757 15 C -0.249 4.249 16 C -0.014 4.014 17 C -0.477 4.477 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.490 5.490 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.238 4.238 26 H 0.268 0.732 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.189 0.811 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.692 -1.401 13.337 13.428 hybrid contribution -0.841 0.239 -1.559 1.787 sum -1.532 -1.162 11.779 11.935 Atomic orbital electron populations 1.25745 0.96644 0.99678 0.97012 1.23146 0.94541 1.01393 1.02975 1.17268 0.83121 0.96135 0.83611 1.22467 1.03978 0.94149 1.01856 1.22200 1.03132 0.93710 0.98138 1.21629 1.00579 0.97072 1.00752 1.45157 1.04277 1.76602 1.10785 1.17323 0.83796 0.91264 0.90927 1.20915 0.92649 1.18996 0.98139 1.20709 0.95001 0.96693 0.95170 1.19919 0.97464 1.15524 0.91624 1.18425 0.94378 1.02425 0.85028 1.41383 1.08180 1.64174 1.05290 0.75716 1.22975 0.82584 1.20147 0.99181 1.18361 0.93118 1.00725 0.89208 1.18866 0.91421 1.44818 0.92632 0.91765 1.26405 1.03708 0.94077 0.95335 1.69597 1.36779 1.42574 1.00038 0.85204 0.77745 0.78268 0.78799 1.18623 1.19693 1.19819 1.19245 0.94043 1.17140 0.93387 0.73215 0.88898 0.89532 0.93802 0.89135 0.88784 0.94925 0.93558 0.91245 0.76887 0.82904 0.83445 0.86098 0.81054 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 19.25 74.32 1.43 -2.94 16 2 C -0.22 -6.59 10.85 31.12 0.34 -6.26 16 3 C 0.28 8.71 0.68 1.80 0.00 8.71 16 4 C -0.17 -4.51 8.15 71.98 0.59 -3.92 16 5 C -0.13 -3.47 4.68 30.60 0.14 -3.33 16 6 C -0.14 -4.09 9.51 71.98 0.68 -3.41 16 7 N -0.74 -29.16 4.25 -307.33 -1.31 -30.47 16 8 C 0.27 11.52 6.26 38.43 0.24 11.76 16 9 C -0.28 -9.77 7.07 22.44 0.16 -9.61 16 10 C -0.06 -1.83 10.00 22.26 0.22 -1.61 16 11 C -0.22 -8.29 10.07 22.43 0.23 -8.06 16 12 C 0.11 5.05 7.23 38.86 0.28 5.33 16 13 N -0.59 -27.02 5.99 -184.92 -1.11 -28.13 16 14 H 0.41 15.42 8.96 -92.71 -0.83 14.59 16 15 C -0.12 -6.76 10.88 84.28 0.92 -5.84 16 16 C -0.01 -0.48 6.10 -19.99 -0.12 -0.60 16 17 C -0.44 -24.87 9.06 23.27 0.21 -24.66 16 18 H 0.06 3.47 5.21 -2.91 -0.02 3.46 16 19 C 0.01 0.62 5.49 85.15 0.47 1.09 16 20 N -0.86 -46.88 10.36 21.79 0.23 -46.65 16 21 Si 0.98 41.39 29.56 68.60 2.03 43.42 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.23 -11.48 6.27 -19.95 -0.13 -11.61 16 26 H 0.25 4.06 7.80 -4.43 -0.03 4.02 16 27 H 0.09 2.41 4.66 -2.39 -0.01 2.40 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.37 4.86 -2.39 -0.01 2.36 16 32 H 0.03 1.14 7.47 -2.39 -0.02 1.12 16 33 H 0.05 1.31 7.38 -2.38 -0.02 1.29 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.39 17.63 5.33 -92.71 -0.49 17.14 16 36 H 0.15 4.28 3.12 -2.91 -0.01 4.27 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.17 9.71 5.72 -2.91 -0.02 9.69 16 40 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -65.76 320.52 5.27 -60.49 By element: Atomic # 1 Polarization: 56.52 SS G_CDS: -0.23 Total: 56.28 kcal Atomic # 6 Polarization: -60.61 SS G_CDS: 5.66 Total: -54.95 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -2.19 Total: -105.25 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -65.76 5.27 -60.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.713 kcal (2) G-P(sol) polarization free energy of solvation -65.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds