Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00306 * 2 1 4 4 C 1.39974 * 119.99531 * 179.97438 * 2 1 3 5 5 C 1.38874 * 120.00430 * 0.02562 * 4 2 1 6 6 C 1.38068 * 120.00525 * 180.02562 * 5 4 2 7 7 C 1.38887 * 119.99991 * 359.97438 * 6 5 4 8 8 N 1.40010 * 120.00075 * 179.97438 * 7 6 5 9 9 C 1.39694 * 119.99439 * 154.58860 * 8 7 6 10 10 C 1.39356 * 119.95669 * 328.42059 * 9 8 7 11 11 C 1.38467 * 120.42332 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32928 * 0.03001 * 11 10 9 13 13 C 1.40762 * 119.89615 * 359.97438 * 12 11 10 14 14 C 1.41407 * 120.20636 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00239 * 27.31873 * 14 13 12 16 16 C 1.39925 * 120.00000 * 207.32400 * 14 13 12 17 17 N 1.30825 * 120.00161 * 11.92583 * 16 14 13 18 18 Si 1.86805 * 120.00032 * 191.93308 * 16 14 13 19 19 H 1.48501 * 109.47026 * 59.99690 * 18 16 14 20 20 H 1.48502 * 109.47024 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46922 * 299.99816 * 18 16 14 22 22 C 1.38303 * 119.95359 * 148.15606 * 9 8 7 23 23 C 1.38881 * 119.99525 * 0.25909 * 7 6 5 24 24 C 1.38077 * 119.99844 * 359.49015 * 23 7 6 25 25 H 1.08996 * 109.47056 * 270.00543 * 1 2 3 26 26 H 1.09000 * 109.46861 * 30.00474 * 1 2 3 27 27 H 1.08999 * 109.47074 * 150.00206 * 1 2 3 28 28 H 1.09004 * 109.46856 * 269.99611 * 3 2 1 29 29 H 1.08999 * 109.47486 * 29.99948 * 3 2 1 30 30 H 1.09001 * 109.47507 * 150.00068 * 3 2 1 31 31 H 1.08005 * 119.99231 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.00375 * 179.97438 * 6 5 4 33 33 H 0.97002 * 120.00195 * 334.30613 * 8 7 6 34 34 H 1.08006 * 119.78851 * 359.97438 * 10 9 8 35 35 H 1.08009 * 119.83507 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.05216 * 179.97438 * 12 11 10 37 37 H 0.97006 * 120.00631 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.16557 * 0.02562 * 22 9 8 39 39 H 1.08004 * 120.00292 * 179.74562 * 23 7 6 40 40 H 1.08000 * 120.00027 * 180.25743 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1648 -1.2123 0.0005 5 6 1.4704 -2.4149 0.0005 6 6 2.1606 -3.6107 0.0016 7 6 3.5495 -3.6109 0.0021 8 7 4.2495 -4.8234 0.0038 9 6 5.5452 -4.8825 -0.5148 10 6 5.9129 -4.0447 -1.5660 11 6 7.1948 -4.0948 -2.0871 12 6 8.1208 -4.9742 -1.5722 13 6 7.7640 -5.8267 -0.5104 14 6 8.7096 -6.7327 0.0230 15 1 9.7646 -6.5083 -0.0342 16 6 8.2786 -7.9201 0.6250 17 7 7.0361 -8.3073 0.4921 18 14 9.4774 -8.9523 1.6186 19 1 10.0044 -8.1472 2.7497 20 1 8.7782 -10.1507 2.1479 21 1 10.6025 -9.3790 0.7483 22 6 6.4631 -5.7685 0.0193 23 6 4.2439 -2.4081 0.0071 24 6 3.5536 -1.2123 0.0007 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3793 1.5832 -1.0277 29 1 1.6086 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 0.3904 -2.4148 0.0005 32 1 1.6206 -4.5460 0.0020 33 1 3.8362 -5.6215 0.3687 34 1 5.1934 -3.3519 -1.9769 35 1 7.4697 -3.4409 -2.9016 36 1 9.1193 -5.0098 -1.9823 37 1 6.7372 -9.1303 0.9097 38 1 6.1806 -6.4156 0.8365 39 1 5.3240 -2.4081 0.0116 40 1 4.0936 -0.2770 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174879713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = 47.817040 kcal Electronic energy + Delta-G solvation = -20851.873404 eV Core-core repulsion = 17823.588616 eV Total energy + Delta-G solvation = -3028.284788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85608 -39.49215 -37.60184 -35.71731 -34.82966 -32.12704 -31.35392 -30.79826 -28.93837 -28.55239 -27.14194 -25.10957 -23.62382 -22.62013 -22.19542 -21.27056 -19.25871 -18.40980 -17.77634 -17.24635 -16.63719 -16.39782 -16.09163 -15.81916 -15.47642 -15.07665 -14.69278 -14.45726 -14.37880 -14.05076 -13.72089 -13.43389 -13.38673 -13.18486 -12.97930 -12.79072 -12.76958 -12.70985 -12.62053 -12.19471 -11.81324 -11.68314 -11.45854 -11.27888 -11.02029 -10.10793 -9.78884 -9.25475 -8.75951 -8.50765 -7.44366 -6.35437 0.55801 0.66921 1.06726 1.30416 1.38917 1.50223 1.56799 2.22853 2.37953 2.73686 2.78313 3.07990 3.78469 3.99155 4.10783 4.31006 4.45623 4.47910 4.52122 4.60567 4.67237 4.74567 4.76467 4.88086 4.94181 4.95184 4.96455 5.16682 5.20256 5.21953 5.30633 5.39210 5.46790 5.52854 5.69601 5.85557 5.97338 6.08260 6.16474 6.26559 6.50948 6.54484 6.67015 6.89975 6.99872 7.02785 7.14959 8.39069 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.003448 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.023552 B = 8119.000453 C = 8557.049082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.650 5.650 3 C 0.092 3.908 4 C 0.166 3.834 5 C -0.162 4.162 6 C -0.135 4.135 7 C 0.126 3.874 8 N -0.691 5.691 9 C 0.188 3.812 10 C -0.266 4.266 11 C -0.073 4.073 12 C -0.263 4.263 13 C 0.100 3.900 14 C -0.501 4.501 15 H 0.075 0.925 16 C 0.033 3.967 17 N -0.829 5.829 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.223 4.223 23 C -0.132 4.132 24 C -0.166 4.166 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.403 0.597 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.285 0.715 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.569 13.037 1.063 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.365 5.365 3 C -0.051 4.051 4 C 0.065 3.935 5 C -0.184 4.184 6 C -0.157 4.157 7 C 0.027 3.973 8 N -0.315 5.315 9 C 0.092 3.908 10 C -0.288 4.288 11 C -0.092 4.092 12 C -0.283 4.283 13 C 0.097 3.903 14 C -0.531 4.531 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.456 5.456 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.246 4.246 23 C -0.154 4.154 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.238 0.762 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.782 13.104 1.067 18.336 hybrid contribution 0.605 -1.117 0.445 1.346 sum -12.177 11.987 1.512 17.154 Atomic orbital electron populations 1.21710 0.78488 1.03333 1.01445 1.46432 1.05608 1.02630 1.81795 1.21687 0.97377 0.84684 1.01326 1.17811 0.90887 0.86733 0.98048 1.20624 1.00178 0.89944 1.07690 1.20702 0.91284 0.99056 1.04637 1.17882 0.91515 0.85723 1.02185 1.42060 1.13523 1.09252 1.66660 1.17669 0.84266 0.96293 0.92595 1.20395 0.97772 1.08071 1.02582 1.20681 0.92970 0.97190 0.98312 1.21149 0.99826 1.05098 1.02228 1.17758 0.92610 0.90519 0.89438 1.19794 0.94608 1.03515 1.35164 0.90721 1.26724 0.97530 0.98738 0.95068 1.69870 1.18371 1.21709 1.35640 0.85246 0.78472 0.77215 0.78692 1.18648 1.19267 1.18431 1.21003 0.94533 1.05081 1.04008 1.20791 0.99501 0.91546 1.03554 1.20591 0.92588 0.97613 1.08048 0.93203 0.90067 0.91346 0.93400 0.89833 0.91910 0.83738 0.84962 0.76223 0.87627 0.86114 0.88486 0.90442 0.87722 0.87408 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 10.19 127.77 1.30 2.59 16 2 N -0.65 -13.07 3.42 -747.06 -2.55 -15.63 16 3 C 0.09 1.43 10.19 127.77 1.30 2.73 16 4 C 0.17 4.38 6.56 38.15 0.25 4.63 16 5 C -0.16 -4.17 9.20 22.38 0.21 -3.96 16 6 C -0.13 -4.02 9.94 22.38 0.22 -3.79 16 7 C 0.13 4.55 6.05 38.14 0.23 4.78 16 8 N -0.69 -28.26 5.47 -180.50 -0.99 -29.25 16 9 C 0.19 9.04 5.91 38.17 0.23 9.27 16 10 C -0.27 -12.21 7.75 22.59 0.18 -12.03 16 11 C -0.07 -3.33 10.01 22.19 0.22 -3.11 16 12 C -0.26 -13.38 9.79 22.76 0.22 -13.16 16 13 C 0.10 5.57 5.56 -21.31 -0.12 5.45 16 14 C -0.50 -27.79 9.06 23.46 0.21 -27.58 16 15 H 0.07 3.99 7.87 -2.91 -0.02 3.96 16 16 C 0.03 1.72 5.24 85.25 0.45 2.16 16 17 N -0.83 -44.20 10.82 21.82 0.24 -43.97 16 18 Si 0.98 39.23 29.58 68.60 2.03 41.26 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.22 -12.09 8.57 22.86 0.20 -11.89 16 23 C -0.13 -4.71 7.85 22.39 0.18 -4.53 16 24 C -0.17 -4.89 9.20 22.38 0.21 -4.69 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 27 H 0.07 0.92 6.20 -2.39 -0.01 0.91 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 0.91 8.07 -2.39 -0.02 0.89 16 30 H 0.06 1.04 6.20 -2.39 -0.01 1.02 16 31 H 0.15 2.87 6.14 -2.91 -0.02 2.85 16 32 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.40 15.45 8.89 -92.71 -0.82 14.62 16 34 H 0.11 4.54 6.55 -2.91 -0.02 4.52 16 35 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 38 H 0.10 5.93 6.17 -2.91 -0.02 5.91 16 39 H 0.11 4.31 6.33 -2.91 -0.02 4.29 16 40 H 0.13 3.39 6.14 -2.91 -0.02 3.38 16 Total: -1.00 -63.28 327.06 4.44 -58.84 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: 0.24 Total: 41.87 kcal Atomic # 6 Polarization: -58.61 SS G_CDS: 5.48 Total: -53.13 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.30 Total: -88.84 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -63.28 4.44 -58.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174879713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.662 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds