Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00392 * 2 1 4 4 C 1.39888 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.38919 * 119.99094 * 0.02562 * 4 2 1 6 6 C 1.38034 * 120.00081 * 180.02562 * 5 4 2 7 7 C 1.38956 * 119.99707 * 0.02562 * 6 5 4 8 8 N 1.39792 * 120.00854 * 179.97438 * 7 6 5 9 9 C 1.38599 * 120.00513 * 185.77747 * 8 7 6 10 10 C 1.38849 * 120.30457 * 254.50442 * 9 8 7 11 11 C 1.38092 * 120.02186 * 180.31686 * 10 9 8 12 12 C 1.38947 * 120.63557 * 359.67266 * 11 10 9 13 13 C 1.36414 * 120.61430 * 0.02562 * 12 11 10 14 14 C 1.40748 * 119.95551 * 0.02562 * 13 12 11 15 15 C 1.40995 * 120.31365 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00246 * 205.98052 * 15 14 13 17 17 C 1.39897 * 119.99691 * 25.98621 * 15 14 13 18 18 N 1.30899 * 120.00028 * 13.57712 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 193.57480 * 17 15 14 20 20 H 1.48501 * 109.47004 * 265.02034 * 19 17 15 21 21 H 1.48497 * 109.47049 * 25.02593 * 19 17 15 22 22 H 1.48503 * 109.46794 * 145.02830 * 19 17 15 23 23 C 1.38968 * 119.98986 * 0.24293 * 7 6 5 24 24 C 1.38031 * 119.99024 * 359.49861 * 23 7 6 25 25 H 1.08993 * 109.47334 * 270.00615 * 1 2 3 26 26 H 1.09003 * 109.46476 * 30.00135 * 1 2 3 27 27 H 1.08998 * 109.47292 * 150.00037 * 1 2 3 28 28 H 1.09003 * 109.47061 * 269.99827 * 3 2 1 29 29 H 1.09000 * 109.46912 * 29.99739 * 3 2 1 30 30 H 1.08998 * 109.47221 * 149.99509 * 3 2 1 31 31 H 1.07996 * 119.99728 * 0.02562 * 5 4 2 32 32 H 1.08005 * 120.00023 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99616 * 5.76619 * 8 7 6 34 34 H 1.08002 * 119.98311 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.67881 * 179.69280 * 11 10 9 36 36 H 1.08002 * 119.68839 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.02351 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.00250 * 179.73178 * 23 7 6 40 40 H 1.08002 * 119.99525 * 180.24462 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1644 -1.2115 0.0005 5 6 1.4696 -2.4144 0.0005 6 6 2.1595 -3.6100 0.0016 7 6 3.5491 -3.6102 0.0032 8 7 4.2480 -4.8208 0.0048 9 6 5.6286 -4.8239 0.1273 10 6 6.4292 -5.0880 -0.9760 11 6 7.8040 -5.0960 -0.8459 12 6 8.4006 -4.8349 0.3814 13 6 7.6391 -4.5662 1.4809 14 6 6.2355 -4.5525 1.3774 15 6 5.4412 -4.2753 2.5088 16 1 4.4321 -4.6557 2.5665 17 6 5.9602 -3.5072 3.5566 18 7 7.0657 -2.8277 3.3847 19 14 5.0754 -3.4513 5.2008 20 1 4.1841 -2.2643 5.2431 21 1 4.2659 -4.6847 5.3694 22 1 6.0732 -3.3602 6.2969 23 6 4.2439 -2.4067 0.0089 24 6 3.5535 -1.2114 0.0024 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 0.3896 -2.4142 -0.0003 32 1 1.6193 -4.5452 0.0020 33 1 3.7667 -5.6588 -0.0796 34 1 5.9764 -5.2926 -1.9349 35 1 8.4213 -5.3069 -1.7066 36 1 9.4773 -4.8447 0.4657 37 1 8.1129 -4.3642 2.4302 38 1 7.4254 -2.2948 4.1110 39 1 5.3238 -2.4066 0.0145 40 1 4.0934 -0.2760 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174881802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = 65.658240 kcal Electronic energy + Delta-G solvation = -21679.843499 eV Core-core repulsion = 18652.332364 eV Total energy + Delta-G solvation = -3027.511135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.16561 -37.84971 -35.97286 -33.71844 -33.42062 -30.50729 -29.55770 -29.08353 -27.81624 -27.15483 -25.12494 -23.65920 -21.90333 -20.91042 -20.56640 -19.50388 -17.29476 -17.06770 -16.17352 -15.75744 -15.13622 -14.78102 -14.70427 -14.12627 -13.92386 -13.67971 -13.02222 -12.91941 -12.62402 -12.47722 -12.31817 -12.08610 -11.93976 -11.68369 -11.56135 -11.42663 -11.11696 -11.05055 -10.85623 -10.43095 -10.28045 -10.07732 -9.60937 -9.45567 -9.19562 -8.17342 -7.99823 -7.41391 -7.32144 -6.74579 -5.87081 -4.34593 2.19713 2.53477 2.76817 2.97226 3.07770 3.12619 3.23859 3.58527 3.94686 4.60381 4.69056 4.76757 5.22369 5.29320 5.43334 5.57657 5.64872 5.65186 5.79650 5.84666 5.89608 6.14508 6.22842 6.26392 6.36722 6.42071 6.59255 6.80205 6.90276 6.95388 7.06868 7.19121 7.32110 7.34206 7.44632 7.56423 7.76726 7.79275 7.96535 8.06346 8.10085 8.26803 8.49093 8.71058 8.81747 8.88813 9.15532 10.17767 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.006408 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.551628 B = 4368.331003 C = 5429.323059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.649 5.649 3 C 0.102 3.898 4 C 0.139 3.861 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.195 3.805 8 N -0.674 5.674 9 C 0.008 3.992 10 C -0.091 4.091 11 C -0.240 4.240 12 C -0.107 4.107 13 C -0.156 4.156 14 C 0.110 3.890 15 C -0.434 4.434 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.261 1.261 22 H -0.276 1.276 23 C -0.113 4.113 24 C -0.148 4.148 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.386 0.614 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.279 0.721 39 H 0.126 0.874 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.234 4.072 -3.649 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.367 5.367 3 C -0.042 4.042 4 C 0.041 3.959 5 C -0.178 4.178 6 C -0.192 4.192 7 C 0.093 3.907 8 N -0.297 5.297 9 C -0.086 4.086 10 C -0.111 4.111 11 C -0.260 4.260 12 C -0.126 4.126 13 C -0.175 4.175 14 C 0.106 3.894 15 C -0.463 4.463 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.185 1.185 22 H -0.201 1.201 23 C -0.136 4.136 24 C -0.170 4.170 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.978 4.414 -3.493 9.764 hybrid contribution -0.481 -0.084 0.835 0.968 sum -8.459 4.330 -2.658 9.867 Atomic orbital electron populations 1.21419 0.80767 1.01627 1.00189 1.45975 1.03945 1.02951 1.83834 1.21451 0.97254 0.85273 1.00207 1.17508 0.90970 0.85103 1.02292 1.20176 0.98206 0.90777 1.08613 1.20215 0.92153 0.97169 1.09679 1.17741 0.90147 0.86918 0.95937 1.41055 1.04097 1.03998 1.80592 1.17310 0.81890 1.16836 0.92549 1.20763 0.93563 1.00803 0.95949 1.20204 0.93773 1.15015 0.96983 1.20467 0.97551 1.00708 0.93827 1.21088 0.93781 1.04521 0.98152 1.17845 0.92095 0.88627 0.90825 1.19390 1.00173 1.26957 0.99774 0.90447 1.25893 0.94513 0.93511 1.00231 1.69830 1.18435 1.20504 1.33042 0.86347 0.79924 0.79808 0.81038 1.19504 1.18520 1.20135 1.20554 1.00109 0.90193 1.02715 1.20419 0.91681 0.97864 1.07072 0.94472 0.92631 0.91826 0.94393 0.92614 0.91534 0.87195 0.87209 0.77996 0.89369 0.89539 0.89574 0.86070 0.90975 0.85636 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.19 59.85 0.61 1.81 16 2 N -0.65 -9.64 3.41 -187.48 -0.64 -10.28 16 3 C 0.10 1.27 10.19 59.85 0.61 1.88 16 4 C 0.14 2.48 6.56 -83.68 -0.55 1.93 16 5 C -0.16 -2.66 9.20 -39.40 -0.36 -3.03 16 6 C -0.17 -3.07 9.89 -39.39 -0.39 -3.46 16 7 C 0.20 4.04 6.09 -83.69 -0.51 3.53 16 8 N -0.67 -14.03 4.73 -8.00 -0.04 -14.07 16 9 C 0.01 0.19 4.62 -83.30 -0.38 -0.19 16 10 C -0.09 -2.01 9.96 -39.41 -0.39 -2.41 16 11 C -0.24 -5.29 10.03 -39.37 -0.40 -5.68 16 12 C -0.11 -2.46 9.96 -39.98 -0.40 -2.86 16 13 C -0.16 -3.93 8.62 -39.29 -0.34 -4.27 16 14 C 0.11 2.81 5.03 -106.63 -0.54 2.28 16 15 C -0.43 -11.18 7.99 -37.92 -0.30 -11.48 16 16 H 0.08 2.02 7.59 -52.49 -0.40 1.62 16 17 C 0.08 1.89 5.22 -17.33 -0.09 1.80 16 18 N -0.79 -20.08 10.81 55.55 0.60 -19.48 16 19 Si 0.90 19.12 29.58 -169.99 -5.03 14.09 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.11 -2.46 8.92 -39.39 -0.35 -2.81 16 24 C -0.15 -2.87 9.20 -39.41 -0.36 -3.24 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.06 0.71 6.19 -51.93 -0.32 0.38 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 8.07 -51.93 -0.42 0.16 16 30 H 0.07 0.88 6.19 -51.93 -0.32 0.56 16 31 H 0.11 1.61 6.13 -52.49 -0.32 1.28 16 32 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.39 7.10 8.84 -40.82 -0.36 6.74 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 3.17 6.10 -52.49 -0.32 2.85 16 38 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 39 H 0.13 3.07 6.72 -52.49 -0.35 2.72 16 40 H 0.11 2.00 6.13 -52.49 -0.32 1.68 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -27.59 328.38 -9.53 -37.12 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.23 Total: 13.86 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -4.14 Total: -26.20 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.08 Total: -43.82 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.59 -9.53 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174881802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.780 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds