Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00392 * 2 1 4 4 C 1.39888 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.38919 * 119.99094 * 0.02562 * 4 2 1 6 6 C 1.38034 * 120.00081 * 180.02562 * 5 4 2 7 7 C 1.38956 * 119.99707 * 0.02562 * 6 5 4 8 8 N 1.39792 * 120.00854 * 179.97438 * 7 6 5 9 9 C 1.38599 * 120.00513 * 185.77747 * 8 7 6 10 10 C 1.38849 * 120.30457 * 254.50442 * 9 8 7 11 11 C 1.38092 * 120.02186 * 180.31686 * 10 9 8 12 12 C 1.38947 * 120.63557 * 359.67266 * 11 10 9 13 13 C 1.36414 * 120.61430 * 0.02562 * 12 11 10 14 14 C 1.40748 * 119.95551 * 0.02562 * 13 12 11 15 15 C 1.40995 * 120.31365 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00246 * 205.98052 * 15 14 13 17 17 C 1.39897 * 119.99691 * 25.98621 * 15 14 13 18 18 N 1.30899 * 120.00028 * 13.57712 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 193.57480 * 17 15 14 20 20 H 1.48501 * 109.47004 * 265.02034 * 19 17 15 21 21 H 1.48497 * 109.47049 * 25.02593 * 19 17 15 22 22 H 1.48503 * 109.46794 * 145.02830 * 19 17 15 23 23 C 1.38968 * 119.98986 * 0.24293 * 7 6 5 24 24 C 1.38031 * 119.99024 * 359.49861 * 23 7 6 25 25 H 1.08993 * 109.47334 * 270.00615 * 1 2 3 26 26 H 1.09003 * 109.46476 * 30.00135 * 1 2 3 27 27 H 1.08998 * 109.47292 * 150.00037 * 1 2 3 28 28 H 1.09003 * 109.47061 * 269.99827 * 3 2 1 29 29 H 1.09000 * 109.46912 * 29.99739 * 3 2 1 30 30 H 1.08998 * 109.47221 * 149.99509 * 3 2 1 31 31 H 1.07996 * 119.99728 * 0.02562 * 5 4 2 32 32 H 1.08005 * 120.00023 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99616 * 5.76619 * 8 7 6 34 34 H 1.08002 * 119.98311 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.67881 * 179.69280 * 11 10 9 36 36 H 1.08002 * 119.68839 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.02351 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.00250 * 179.73178 * 23 7 6 40 40 H 1.08002 * 119.99525 * 180.24462 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1644 -1.2115 0.0005 5 6 1.4696 -2.4144 0.0005 6 6 2.1595 -3.6100 0.0016 7 6 3.5491 -3.6102 0.0032 8 7 4.2480 -4.8208 0.0048 9 6 5.6286 -4.8239 0.1273 10 6 6.4292 -5.0880 -0.9760 11 6 7.8040 -5.0960 -0.8459 12 6 8.4006 -4.8349 0.3814 13 6 7.6391 -4.5662 1.4809 14 6 6.2355 -4.5525 1.3774 15 6 5.4412 -4.2753 2.5088 16 1 4.4321 -4.6557 2.5665 17 6 5.9602 -3.5072 3.5566 18 7 7.0657 -2.8277 3.3847 19 14 5.0754 -3.4513 5.2008 20 1 4.1841 -2.2643 5.2431 21 1 4.2659 -4.6847 5.3694 22 1 6.0732 -3.3602 6.2969 23 6 4.2439 -2.4067 0.0089 24 6 3.5535 -1.2114 0.0024 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.3793 1.5833 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 0.3896 -2.4142 -0.0003 32 1 1.6193 -4.5452 0.0020 33 1 3.7667 -5.6588 -0.0796 34 1 5.9764 -5.2926 -1.9349 35 1 8.4213 -5.3069 -1.7066 36 1 9.4773 -4.8447 0.4657 37 1 8.1129 -4.3642 2.4302 38 1 7.4254 -2.2948 4.1110 39 1 5.3238 -2.4066 0.0145 40 1 4.0934 -0.2760 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174881802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = 52.676526 kcal Electronic energy + Delta-G solvation = -21680.406428 eV Core-core repulsion = 18652.332364 eV Total energy + Delta-G solvation = -3028.074064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66893 -39.47761 -37.38234 -35.53499 -34.96604 -31.93359 -31.40293 -30.68067 -28.87022 -28.71178 -26.93132 -24.95265 -23.42088 -22.74328 -22.09933 -21.06532 -19.13944 -18.48793 -17.81192 -17.24057 -16.84577 -16.14068 -15.80150 -15.76312 -15.48640 -15.32011 -14.58198 -14.38052 -14.28317 -13.93396 -13.55088 -13.41322 -13.38095 -13.18627 -12.90128 -12.80105 -12.74467 -12.69089 -12.56094 -12.17152 -11.87757 -11.58867 -11.36563 -11.07996 -11.02800 -9.65286 -9.48238 -9.27041 -9.04681 -8.56900 -7.31529 -6.26175 0.70817 0.91565 1.06516 1.19595 1.34081 1.44977 1.50808 2.19319 2.47720 2.78230 3.08657 3.26489 3.76822 4.09801 4.20232 4.34522 4.49243 4.50792 4.56771 4.63940 4.67492 4.79410 4.83168 4.90346 4.94841 4.96597 4.98526 5.18652 5.30037 5.35389 5.43019 5.51996 5.54164 5.67272 5.80642 5.92814 6.06060 6.12715 6.22821 6.41533 6.60511 6.62315 6.76896 6.95438 6.98134 7.18156 7.44930 8.35749 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.006408 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.551628 B = 4368.331003 C = 5429.323059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.654 5.654 3 C 0.096 3.904 4 C 0.144 3.856 5 C -0.154 4.154 6 C -0.161 4.161 7 C 0.172 3.828 8 N -0.676 5.676 9 C 0.015 3.985 10 C -0.100 4.100 11 C -0.235 4.235 12 C -0.113 4.113 13 C -0.181 4.181 14 C 0.084 3.916 15 C -0.456 4.456 16 H 0.066 0.934 17 C 0.037 3.963 18 N -0.823 5.823 19 Si 0.966 3.034 20 H -0.271 1.271 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.137 4.137 24 C -0.165 4.165 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.397 0.603 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.284 0.716 39 H 0.085 0.915 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 4.504 -4.251 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.371 5.371 3 C -0.047 4.047 4 C 0.044 3.956 5 C -0.177 4.177 6 C -0.184 4.184 7 C 0.070 3.930 8 N -0.302 5.302 9 C -0.080 4.080 10 C -0.120 4.120 11 C -0.254 4.254 12 C -0.132 4.132 13 C -0.202 4.202 14 C 0.080 3.920 15 C -0.486 4.486 16 H 0.085 0.915 17 C -0.177 4.177 18 N -0.450 5.450 19 Si 0.788 3.212 20 H -0.197 1.197 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.160 4.160 24 C -0.187 4.187 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.233 0.767 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.367 4.869 -4.109 12.168 hybrid contribution 0.189 -0.140 0.878 0.909 sum -10.178 4.728 -3.232 11.678 Atomic orbital electron populations 1.21654 0.78512 1.03298 1.01088 1.46291 1.05473 1.02459 1.82841 1.21595 0.97000 0.85037 1.01055 1.17656 0.90446 0.86868 1.00617 1.20562 0.99845 0.90011 1.07233 1.20537 0.91067 0.98878 1.07878 1.17876 0.91268 0.86243 0.97634 1.40961 1.03235 1.04714 1.81251 1.17468 0.83325 1.15036 0.92150 1.21067 0.93845 1.00511 0.96546 1.20579 0.94168 1.13246 0.97445 1.20727 0.98662 1.00121 0.93666 1.21074 0.94236 1.06484 0.98360 1.18147 0.92476 0.89488 0.91920 1.19400 0.99853 1.28273 1.01030 0.91549 1.26579 0.95219 0.92896 1.02996 1.69888 1.19734 1.21282 1.34058 0.85422 0.78914 0.79425 0.77424 1.19663 1.18390 1.18883 1.20330 0.98264 0.91961 1.05407 1.20479 0.92941 0.97239 1.08063 0.93822 0.90064 0.91158 0.93358 0.89948 0.93076 0.83901 0.84630 0.76747 0.87190 0.86536 0.87447 0.87838 0.90512 0.89687 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.19 127.77 1.30 3.16 16 2 N -0.65 -17.69 3.41 -747.06 -2.55 -20.24 16 3 C 0.10 2.20 10.19 127.77 1.30 3.51 16 4 C 0.14 4.91 6.56 38.18 0.25 5.16 16 5 C -0.15 -4.89 9.20 22.38 0.21 -4.69 16 6 C -0.16 -5.57 9.89 22.39 0.22 -5.35 16 7 C 0.17 7.15 6.09 38.22 0.23 7.38 16 8 N -0.68 -28.42 4.73 -179.24 -0.85 -29.27 16 9 C 0.01 0.71 4.62 39.05 0.18 0.89 16 10 C -0.10 -4.40 9.96 22.38 0.22 -4.18 16 11 C -0.23 -10.15 10.03 22.41 0.22 -9.93 16 12 C -0.11 -5.27 9.96 22.01 0.22 -5.05 16 13 C -0.18 -9.54 8.62 22.46 0.19 -9.35 16 14 C 0.08 4.44 5.03 -21.16 -0.11 4.34 16 15 C -0.46 -24.47 7.99 23.35 0.19 -24.28 16 16 H 0.07 3.59 7.59 -2.91 -0.02 3.56 16 17 C 0.04 1.92 5.22 85.23 0.44 2.37 16 18 N -0.82 -43.52 10.81 21.82 0.24 -43.28 16 19 Si 0.97 40.06 29.58 68.60 2.03 42.09 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 C -0.14 -6.17 8.92 22.40 0.20 -5.97 16 24 C -0.16 -6.50 9.20 22.38 0.21 -6.29 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 27 H 0.07 1.26 6.19 -2.39 -0.01 1.25 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 30 H 0.05 1.33 6.19 -2.39 -0.01 1.31 16 31 H 0.14 3.57 6.13 -2.91 -0.02 3.55 16 32 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.40 14.51 8.84 -92.71 -0.82 13.69 16 34 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.10 5.72 6.10 -2.91 -0.02 5.70 16 38 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 39 H 0.08 4.46 6.72 -2.91 -0.02 4.44 16 40 H 0.12 4.28 6.13 -2.91 -0.02 4.26 16 Total: -1.00 -61.63 328.38 4.59 -57.04 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: 0.24 Total: 41.94 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 5.49 Total: -48.28 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -3.16 Total: -92.78 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -61.63 4.59 -57.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174881802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.715 kcal (2) G-P(sol) polarization free energy of solvation -61.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds