Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00033 * 2 1 4 4 C 1.39670 * 119.99499 * 180.02562 * 2 1 3 5 5 C 1.39009 * 120.03291 * 180.02562 * 4 2 1 6 6 C 1.38150 * 120.08963 * 179.97438 * 5 4 2 7 7 C 1.38157 * 120.14663 * 359.74602 * 6 5 4 8 8 C 1.39007 * 120.07338 * 0.51318 * 7 6 5 9 9 N 1.39585 * 120.04945 * 179.76617 * 8 7 6 10 10 C 1.38692 * 119.99414 * 4.11681 * 9 8 7 11 11 C 1.38807 * 120.29649 * 256.12560 * 10 9 8 12 12 C 1.38121 * 120.02028 * 180.28005 * 11 10 9 13 13 C 1.38932 * 120.63368 * 359.73976 * 12 11 10 14 14 C 1.36429 * 120.60568 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.95391 * 0.02562 * 14 13 12 16 16 C 1.41009 * 120.30743 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99679 * 154.33834 * 16 15 14 18 18 C 1.39904 * 120.00071 * 334.34153 * 16 15 14 19 19 N 1.30887 * 120.00227 * 329.29164 * 18 16 15 20 20 Si 1.86799 * 119.99778 * 149.29871 * 18 16 15 21 21 H 1.48500 * 109.47159 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.47067 * 299.99400 * 20 18 16 23 23 H 1.48494 * 109.47757 * 59.99457 * 20 18 16 24 24 C 1.38736 * 120.03892 * 0.02562 * 4 2 1 25 25 H 1.09004 * 109.47162 * 240.00299 * 1 2 3 26 26 H 1.09008 * 109.47198 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47589 * 120.00072 * 1 2 3 28 28 H 1.09000 * 109.47176 * 270.00180 * 3 2 1 29 29 H 1.08997 * 109.47320 * 30.00442 * 3 2 1 30 30 H 1.08999 * 109.47156 * 150.00185 * 3 2 1 31 31 H 1.08005 * 119.95315 * 359.96021 * 5 4 2 32 32 H 1.07996 * 119.92828 * 180.02562 * 6 5 4 33 33 H 1.08008 * 119.96222 * 180.25094 * 7 6 5 34 34 H 0.96993 * 120.00304 * 184.11344 * 9 8 7 35 35 H 1.07996 * 119.98879 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.68399 * 179.76264 * 12 11 10 37 37 H 1.07996 * 119.69575 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.02174 * 180.02562 * 14 13 12 39 39 H 0.96996 * 119.99804 * 352.86195 * 19 18 16 40 40 H 1.08002 * 120.07390 * 0.03707 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1632 -1.2096 -0.0005 5 6 3.5533 -1.2106 0.0000 6 6 4.2452 -2.4063 0.0000 7 6 3.5585 -3.6052 0.0048 8 6 2.1685 -3.6118 -0.0012 9 7 1.4753 -4.8234 -0.0013 10 6 2.1705 -6.0200 0.0907 11 6 2.3510 -6.8132 -1.0339 12 6 3.0393 -8.0066 -0.9346 13 6 3.5613 -8.4235 0.2836 14 6 3.4040 -7.6612 1.4041 15 6 2.7070 -6.4406 1.3314 16 6 2.5395 -5.6470 2.4850 17 1 2.3968 -4.5807 2.3907 18 6 2.5584 -6.2411 3.7515 19 7 2.1358 -7.4704 3.9042 20 14 3.1866 -5.2797 5.2247 21 1 3.1025 -6.1271 6.4413 22 1 4.5993 -4.8851 4.9925 23 1 2.3571 -4.0623 5.4118 24 6 1.4703 -2.4115 -0.0016 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 2.3791 1.5833 -1.0277 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5138 31 1 4.0932 -0.2751 0.0002 32 1 5.3251 -2.4040 0.0008 33 1 4.1024 -4.5383 0.0088 34 1 0.5075 -4.8285 -0.0657 35 1 1.9490 -6.4996 -1.9859 36 1 3.1733 -8.6214 -1.8123 37 1 4.0973 -9.3591 0.3439 38 1 3.8141 -7.9941 2.3461 39 1 1.7143 -7.9338 3.1636 40 1 0.3903 -2.4136 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174963690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = 54.098728 kcal Electronic energy + Delta-G solvation = -21606.858284 eV Core-core repulsion = 18578.845891 eV Total energy + Delta-G solvation = -3028.012393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.31230 -38.02025 -36.08097 -34.06861 -33.76023 -30.24803 -29.40217 -29.09780 -28.31603 -26.87158 -24.89229 -24.38267 -21.49564 -21.20841 -20.96670 -19.45478 -17.88552 -17.18056 -16.26296 -15.31481 -14.94198 -14.87182 -14.71115 -14.57750 -14.33358 -13.90018 -13.16708 -13.08016 -12.59560 -12.55008 -12.36327 -12.16768 -12.10301 -12.04119 -11.90844 -11.29499 -10.93834 -10.83867 -10.64233 -10.45062 -10.42302 -10.22290 -9.81257 -9.46869 -9.00442 -8.84800 -7.69133 -7.64702 -7.23637 -7.07561 -6.45827 -4.42732 2.23833 2.42728 2.71355 2.79401 3.16500 3.27615 3.37531 3.38780 3.99994 4.46787 4.51354 4.67309 5.08296 5.20388 5.36974 5.40774 5.55377 5.62660 5.68324 5.76896 5.87865 6.09169 6.11644 6.22257 6.26165 6.30183 6.36609 6.51279 6.81262 6.89591 7.01704 7.15093 7.28333 7.33265 7.37260 7.53510 7.63946 7.72477 7.80464 7.92322 7.93402 8.11995 8.20272 8.50280 8.57308 8.82016 8.99414 9.96212 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.005985 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.169346 B = 4677.152665 C = 5777.215811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.644 5.644 3 C 0.100 3.900 4 C 0.244 3.756 5 C -0.265 4.265 6 C -0.039 4.039 7 C -0.220 4.220 8 C 0.276 3.724 9 N -0.661 5.661 10 C -0.003 4.003 11 C -0.074 4.074 12 C -0.257 4.257 13 C -0.082 4.082 14 C -0.212 4.212 15 C 0.102 3.898 16 C -0.501 4.501 17 H 0.083 0.917 18 C 0.044 3.956 19 N -0.784 5.784 20 Si 1.056 2.944 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.279 4.279 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.389 0.611 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.298 0.702 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 11.334 -4.484 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.358 5.358 3 C -0.044 4.044 4 C 0.144 3.856 5 C -0.289 4.289 6 C -0.058 4.058 7 C -0.244 4.244 8 C 0.170 3.830 9 N -0.281 5.281 10 C -0.096 4.096 11 C -0.093 4.093 12 C -0.277 4.277 13 C -0.100 4.100 14 C -0.232 4.232 15 C 0.098 3.902 16 C -0.528 4.528 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.406 5.406 20 Si 0.879 3.121 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.201 1.201 24 C -0.307 4.307 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.223 0.777 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.902 11.135 -2.833 11.525 hybrid contribution -0.768 0.041 -1.667 1.835 sum -1.670 11.176 -4.499 12.163 Atomic orbital electron populations 1.21481 0.80225 1.01399 1.01066 1.46174 1.04498 1.03218 1.81918 1.21539 0.97356 0.85021 1.00477 1.17338 0.90802 0.84506 0.92940 1.20223 0.91726 0.97805 1.19136 1.20532 0.98501 0.91610 0.95186 1.20527 0.92476 0.98258 1.13132 1.17643 0.91382 0.85161 0.88839 1.41201 1.06840 1.01505 1.78510 1.17251 1.08545 0.90089 0.93725 1.20797 0.97780 0.95030 0.95741 1.20125 1.11277 0.99553 0.96778 1.20384 0.98515 0.97728 0.93402 1.20798 1.06206 0.98457 0.97708 1.17792 0.89145 0.91197 0.92108 1.20460 1.43491 0.97399 0.91442 0.89916 1.27008 0.92782 0.95693 1.02465 1.70480 1.21636 1.11158 1.37298 0.83770 0.77953 0.75801 0.74547 1.19930 1.19741 1.20051 1.19836 0.98437 0.90060 1.22331 0.93091 0.91655 0.93237 0.94117 0.92315 0.91359 0.87392 0.87104 0.86259 0.77661 0.89227 0.89282 0.89348 0.87914 0.88891 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 9.40 59.85 0.56 1.72 16 2 N -0.64 -8.96 3.41 -187.58 -0.64 -9.60 16 3 C 0.10 1.07 10.16 59.84 0.61 1.67 16 4 C 0.24 4.18 6.55 -83.82 -0.55 3.63 16 5 C -0.26 -4.49 9.21 -39.33 -0.36 -4.85 16 6 C -0.04 -0.70 10.03 -39.64 -0.40 -1.10 16 7 C -0.22 -4.61 8.87 -39.33 -0.35 -4.96 16 8 C 0.28 5.67 5.40 -83.81 -0.45 5.22 16 9 N -0.66 -13.91 4.85 -8.06 -0.04 -13.95 16 10 C 0.00 -0.06 4.58 -83.28 -0.38 -0.44 16 11 C -0.07 -1.63 9.96 -39.41 -0.39 -2.02 16 12 C -0.26 -5.63 10.03 -39.37 -0.40 -6.02 16 13 C -0.08 -1.85 9.97 -39.98 -0.40 -2.25 16 14 C -0.21 -5.27 8.12 -39.29 -0.32 -5.59 16 15 C 0.10 2.59 4.74 -106.63 -0.51 2.08 16 16 C -0.50 -12.94 8.30 -37.91 -0.31 -13.26 16 17 H 0.08 2.20 6.59 -52.49 -0.35 1.86 16 18 C 0.04 1.10 4.78 -17.33 -0.08 1.02 16 19 N -0.78 -20.32 12.38 55.55 0.69 -19.63 16 20 Si 1.06 21.92 30.03 -169.99 -5.10 16.81 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 24 C -0.28 -5.14 9.16 -39.17 -0.36 -5.50 16 25 H 0.05 0.61 7.95 -51.93 -0.41 0.19 16 26 H 0.06 0.57 7.80 -51.92 -0.40 0.16 16 27 H 0.05 0.56 7.94 -51.93 -0.41 0.15 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 30 H 0.07 0.74 6.19 -51.93 -0.32 0.41 16 31 H 0.11 1.57 6.13 -52.48 -0.32 1.25 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 2.76 6.71 -52.48 -0.35 2.40 16 34 H 0.39 7.43 8.83 -40.82 -0.36 7.07 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.10 2.64 6.72 -52.49 -0.35 2.29 16 39 H 0.30 7.92 7.23 -40.82 -0.30 7.62 16 40 H 0.11 1.85 6.73 -52.49 -0.35 1.50 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -27.65 328.36 -9.49 -37.14 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -5.25 Total: 14.91 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -4.09 Total: -30.64 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.01 Total: -43.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.10 Total: 16.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.65 -9.49 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174963690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.242 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds