Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46511 * 119.99687 * 2 1 4 4 C 1.39667 * 120.00175 * 180.02562 * 2 1 3 5 5 C 1.39003 * 120.03223 * 179.97438 * 4 2 1 6 6 C 1.38137 * 120.06866 * 180.02562 * 5 4 2 7 7 C 1.38170 * 120.15601 * 359.97438 * 6 5 4 8 8 C 1.38963 * 120.06968 * 0.02562 * 7 6 5 9 9 N 1.39712 * 120.04063 * 179.97438 * 8 7 6 10 10 C 1.39725 * 119.99175 * 328.10363 * 9 8 7 11 11 C 1.39345 * 119.95791 * 331.06232 * 10 9 8 12 12 C 1.38473 * 120.42016 * 179.72170 * 11 10 9 13 13 C 1.37694 * 120.33261 * 0.55726 * 12 11 10 14 14 C 1.40754 * 119.88999 * 359.72153 * 13 12 11 15 15 C 1.41412 * 120.20758 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00211 * 152.39691 * 15 14 13 17 17 C 1.39929 * 119.99472 * 332.39489 * 15 14 13 18 18 N 1.30825 * 120.00556 * 340.16605 * 17 15 14 19 19 Si 1.86808 * 119.99674 * 160.17042 * 17 15 14 20 20 H 1.48504 * 109.47017 * 94.97793 * 19 17 15 21 21 H 1.48496 * 109.46916 * 214.97928 * 19 17 15 22 22 H 1.48506 * 109.46863 * 334.98095 * 19 17 15 23 23 C 1.38308 * 119.94761 * 151.34122 * 10 9 8 24 24 C 1.38743 * 120.03647 * 359.97438 * 4 2 1 25 25 H 1.09005 * 109.47051 * 269.99843 * 1 2 3 26 26 H 1.08999 * 109.47489 * 29.99609 * 1 2 3 27 27 H 1.08997 * 109.47052 * 150.00448 * 1 2 3 28 28 H 1.08998 * 109.46532 * 240.00359 * 3 2 1 29 29 H 1.09002 * 109.46592 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46540 * 120.00227 * 3 2 1 31 31 H 1.07989 * 119.96374 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.92326 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.96814 * 180.02562 * 7 6 5 34 34 H 0.96992 * 120.00517 * 148.10571 * 9 8 7 35 35 H 1.08003 * 119.79009 * 359.97438 * 11 10 9 36 36 H 1.08008 * 119.83658 * 180.25629 * 12 11 10 37 37 H 1.07998 * 120.05611 * 179.74543 * 13 12 11 38 38 H 0.96996 * 120.00765 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.16288 * 359.97382 * 23 10 9 40 40 H 1.08001 * 120.07491 * 0.25395 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5534 -1.2103 -0.0011 6 6 4.2449 -2.4061 -0.0021 7 6 3.5581 -3.6050 -0.0022 8 6 2.1685 -3.6114 -0.0016 9 7 1.4746 -4.8241 -0.0022 10 6 2.0193 -5.9401 -0.6425 11 6 2.8660 -5.7705 -1.7362 12 6 3.4156 -6.8696 -2.3744 13 6 3.1222 -8.1436 -1.9421 14 6 2.2639 -8.3307 -0.8422 15 6 1.9576 -9.6361 -0.3929 16 1 1.7009 -9.8044 0.6426 17 6 1.9871 -10.7096 -1.2899 18 7 1.9096 -10.4890 -2.5771 19 14 2.1370 -12.4580 -0.6494 20 1 0.7841 -13.0578 -0.5262 21 1 2.9513 -13.2633 -1.5947 22 1 2.7948 -12.4427 0.6820 23 6 1.7126 -7.2118 -0.1935 24 6 1.4705 -2.4115 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5137 28 1 2.8240 1.3266 -0.8900 29 1 1.4890 2.0973 -0.0005 30 1 2.8241 1.3265 0.8900 31 1 4.0933 -0.2750 -0.0007 32 1 5.3249 -2.4039 -0.0030 33 1 4.1018 -4.5382 -0.0026 34 1 0.6150 -4.8912 0.4419 35 1 3.0982 -4.7754 -2.0858 36 1 4.0740 -6.7271 -3.2187 37 1 3.5501 -8.9977 -2.4457 38 1 1.9304 -11.2331 -3.1989 39 1 1.0533 -7.3447 0.6515 40 1 0.3905 -2.4137 -0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174967013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = 57.782227 kcal Electronic energy + Delta-G solvation = -20760.733375 eV Core-core repulsion = 17732.880710 eV Total energy + Delta-G solvation = -3027.852665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.60740 -37.94286 -36.28364 -34.49571 -33.11061 -30.41844 -29.92448 -29.27434 -28.34251 -26.74199 -25.28940 -24.57941 -21.92903 -21.24533 -20.59798 -19.79449 -17.61670 -17.14531 -16.00387 -15.56078 -15.21528 -15.13569 -15.00030 -14.66001 -14.43481 -13.66785 -13.48399 -13.15603 -12.83744 -12.76495 -12.37324 -12.29982 -12.21673 -12.05007 -11.72571 -11.38735 -11.16936 -11.06476 -10.79925 -10.64896 -10.51135 -10.08964 -9.85179 -9.50871 -9.30304 -9.04022 -8.04023 -7.44084 -7.16310 -6.76199 -6.34729 -4.34930 1.82681 1.99582 2.81766 3.08363 3.10316 3.14035 3.14634 3.25965 3.94945 4.10334 4.29220 4.66532 4.89611 5.00579 5.18453 5.29988 5.43020 5.49541 5.56246 5.59818 5.70592 5.82130 5.93168 5.98309 6.03528 6.29397 6.48951 6.53302 6.79303 6.88348 6.95884 6.99421 7.05329 7.14510 7.25586 7.35629 7.36535 7.62218 7.78261 7.85612 8.06686 8.11778 8.42051 8.46055 8.68242 8.92234 9.00181 10.21376 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.003179 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.400088 B = 8806.779708 C = 9055.184859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.643 5.643 3 C 0.101 3.899 4 C 0.236 3.764 5 C -0.241 4.241 6 C -0.047 4.047 7 C -0.209 4.209 8 C 0.247 3.753 9 N -0.690 5.690 10 C 0.188 3.812 11 C -0.265 4.265 12 C -0.084 4.084 13 C -0.180 4.180 14 C 0.134 3.866 15 C -0.469 4.469 16 H 0.077 0.923 17 C 0.080 3.920 18 N -0.791 5.791 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.260 4.260 24 C -0.256 4.256 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.398 0.602 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.280 0.720 39 H 0.093 0.907 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 16.195 3.596 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.042 4.042 4 C 0.135 3.865 5 C -0.264 4.264 6 C -0.067 4.067 7 C -0.232 4.232 8 C 0.145 3.855 9 N -0.312 5.312 10 C 0.094 3.906 11 C -0.287 4.287 12 C -0.103 4.103 13 C -0.200 4.200 14 C 0.131 3.869 15 C -0.498 4.498 16 H 0.095 0.905 17 C -0.138 4.138 18 N -0.416 5.416 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.283 4.283 24 C -0.282 4.282 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.261 16.179 3.295 16.513 hybrid contribution -0.437 -0.816 0.282 0.968 sum -0.699 15.363 3.577 15.789 Atomic orbital electron populations 1.21601 0.79984 1.02400 1.00786 1.46222 1.04670 1.03177 1.81535 1.21511 0.96778 0.84880 1.01041 1.17424 0.90928 0.84747 0.93363 1.20353 0.91747 0.98135 1.16196 1.20631 0.98924 0.91473 0.95654 1.20884 0.92772 0.98685 1.10811 1.17468 0.91151 0.84983 0.91852 1.42203 1.22647 1.07230 1.59074 1.17432 0.96079 0.85200 0.91936 1.20167 1.10211 0.97389 1.00898 1.20491 0.98814 0.93046 0.97939 1.21153 1.02285 0.95124 1.01431 1.17342 0.87633 0.91912 0.89973 1.19501 1.42342 0.91387 0.96609 0.90481 1.25863 0.92089 1.01497 0.94368 1.69846 1.34663 1.34258 1.02880 0.86387 0.79074 0.81633 0.80141 1.19664 1.20049 1.18417 1.20654 1.10335 0.90825 1.06451 1.20200 0.99017 0.90165 1.18867 0.93809 0.92021 0.91287 0.93052 0.91404 0.93052 0.87008 0.86528 0.85579 0.76680 0.88816 0.89221 0.87199 0.90919 0.88890 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 10.16 59.85 0.61 1.50 16 2 N -0.64 -7.45 3.41 -187.57 -0.64 -8.09 16 3 C 0.10 0.87 9.40 59.85 0.56 1.44 16 4 C 0.24 3.40 6.55 -83.82 -0.55 2.85 16 5 C -0.24 -3.38 9.31 -39.34 -0.37 -3.75 16 6 C -0.05 -0.71 10.03 -39.64 -0.40 -1.11 16 7 C -0.21 -3.67 7.90 -39.34 -0.31 -3.98 16 8 C 0.25 4.38 5.86 -83.78 -0.49 3.89 16 9 N -0.69 -13.05 5.45 -8.47 -0.05 -13.10 16 10 C 0.19 4.23 5.93 -83.82 -0.50 3.73 16 11 C -0.26 -6.06 7.97 -39.08 -0.31 -6.37 16 12 C -0.08 -1.99 10.01 -39.69 -0.40 -2.39 16 13 C -0.18 -4.69 8.68 -38.83 -0.34 -5.03 16 14 C 0.13 3.59 5.53 -106.85 -0.59 3.00 16 15 C -0.47 -12.47 9.02 -37.74 -0.34 -12.81 16 16 H 0.08 1.98 7.92 -52.49 -0.42 1.56 16 17 C 0.08 2.02 5.06 -17.35 -0.09 1.93 16 18 N -0.79 -20.59 11.30 55.55 0.63 -19.97 16 19 Si 0.90 18.68 29.60 -169.99 -5.03 13.65 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.26 -6.38 9.69 -38.67 -0.37 -6.76 16 24 C -0.26 -4.00 9.12 -39.18 -0.36 -4.35 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 27 H 0.07 0.69 6.19 -51.93 -0.32 0.36 16 28 H 0.05 0.44 7.95 -51.93 -0.41 0.02 16 29 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 30 H 0.05 0.43 7.95 -51.93 -0.41 0.01 16 31 H 0.11 1.33 6.72 -52.49 -0.35 0.97 16 32 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.13 2.42 6.72 -52.49 -0.35 2.07 16 34 H 0.40 6.69 8.90 -40.82 -0.36 6.33 16 35 H 0.09 2.05 6.59 -52.48 -0.35 1.71 16 36 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.11 2.94 6.47 -52.49 -0.34 2.60 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.12 1.65 6.13 -52.49 -0.32 1.33 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -28.79 329.17 -9.65 -38.44 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.28 Total: 12.31 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -4.24 Total: -28.20 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.06 Total: -41.15 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.79 -9.65 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174967013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.220 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds