Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46511 * 119.99687 * 2 1 4 4 C 1.39667 * 120.00175 * 180.02562 * 2 1 3 5 5 C 1.39003 * 120.03223 * 179.97438 * 4 2 1 6 6 C 1.38137 * 120.06866 * 180.02562 * 5 4 2 7 7 C 1.38170 * 120.15601 * 359.97438 * 6 5 4 8 8 C 1.38963 * 120.06968 * 0.02562 * 7 6 5 9 9 N 1.39712 * 120.04063 * 179.97438 * 8 7 6 10 10 C 1.39725 * 119.99175 * 328.10363 * 9 8 7 11 11 C 1.39345 * 119.95791 * 331.06232 * 10 9 8 12 12 C 1.38473 * 120.42016 * 179.72170 * 11 10 9 13 13 C 1.37694 * 120.33261 * 0.55726 * 12 11 10 14 14 C 1.40754 * 119.88999 * 359.72153 * 13 12 11 15 15 C 1.41412 * 120.20758 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00211 * 152.39691 * 15 14 13 17 17 C 1.39929 * 119.99472 * 332.39489 * 15 14 13 18 18 N 1.30825 * 120.00556 * 340.16605 * 17 15 14 19 19 Si 1.86808 * 119.99674 * 160.17042 * 17 15 14 20 20 H 1.48504 * 109.47017 * 94.97793 * 19 17 15 21 21 H 1.48496 * 109.46916 * 214.97928 * 19 17 15 22 22 H 1.48506 * 109.46863 * 334.98095 * 19 17 15 23 23 C 1.38308 * 119.94761 * 151.34122 * 10 9 8 24 24 C 1.38743 * 120.03647 * 359.97438 * 4 2 1 25 25 H 1.09005 * 109.47051 * 269.99843 * 1 2 3 26 26 H 1.08999 * 109.47489 * 29.99609 * 1 2 3 27 27 H 1.08997 * 109.47052 * 150.00448 * 1 2 3 28 28 H 1.08998 * 109.46532 * 240.00359 * 3 2 1 29 29 H 1.09002 * 109.46592 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46540 * 120.00227 * 3 2 1 31 31 H 1.07989 * 119.96374 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.92326 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.96814 * 180.02562 * 7 6 5 34 34 H 0.96992 * 120.00517 * 148.10571 * 9 8 7 35 35 H 1.08003 * 119.79009 * 359.97438 * 11 10 9 36 36 H 1.08008 * 119.83658 * 180.25629 * 12 11 10 37 37 H 1.07998 * 120.05611 * 179.74543 * 13 12 11 38 38 H 0.96996 * 120.00765 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.16288 * 359.97382 * 23 10 9 40 40 H 1.08001 * 120.07491 * 0.25395 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5534 -1.2103 -0.0011 6 6 4.2449 -2.4061 -0.0021 7 6 3.5581 -3.6050 -0.0022 8 6 2.1685 -3.6114 -0.0016 9 7 1.4746 -4.8241 -0.0022 10 6 2.0193 -5.9401 -0.6425 11 6 2.8660 -5.7705 -1.7362 12 6 3.4156 -6.8696 -2.3744 13 6 3.1222 -8.1436 -1.9421 14 6 2.2639 -8.3307 -0.8422 15 6 1.9576 -9.6361 -0.3929 16 1 1.7009 -9.8044 0.6426 17 6 1.9871 -10.7096 -1.2899 18 7 1.9096 -10.4890 -2.5771 19 14 2.1370 -12.4580 -0.6494 20 1 0.7841 -13.0578 -0.5262 21 1 2.9513 -13.2633 -1.5947 22 1 2.7948 -12.4427 0.6820 23 6 1.7126 -7.2118 -0.1935 24 6 1.4705 -2.4115 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5137 28 1 2.8240 1.3266 -0.8900 29 1 1.4890 2.0973 -0.0005 30 1 2.8241 1.3265 0.8900 31 1 4.0933 -0.2750 -0.0007 32 1 5.3249 -2.4039 -0.0030 33 1 4.1018 -4.5382 -0.0026 34 1 0.6150 -4.8912 0.4419 35 1 3.0982 -4.7754 -2.0858 36 1 4.0740 -6.7271 -3.2187 37 1 3.5501 -8.9977 -2.4457 38 1 1.9304 -11.2331 -3.1989 39 1 1.0533 -7.3447 0.6515 40 1 0.3905 -2.4137 -0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174967013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = 43.496824 kcal Electronic energy + Delta-G solvation = -20761.352836 eV Core-core repulsion = 17732.880710 eV Total energy + Delta-G solvation = -3028.472126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89132 -39.51050 -37.60262 -35.97547 -34.85304 -31.79037 -31.68273 -30.55955 -29.41646 -28.10798 -27.16753 -25.59312 -23.31259 -22.84127 -22.25414 -21.21411 -19.24201 -18.49195 -17.45976 -17.19027 -16.62086 -16.36060 -16.16694 -16.00937 -15.86543 -15.13578 -14.75895 -14.56813 -14.45768 -14.04058 -13.78866 -13.42838 -13.33080 -13.14753 -13.03576 -12.86851 -12.76037 -12.53893 -12.40677 -12.20017 -11.89632 -11.71251 -11.57455 -11.29296 -10.94205 -10.47722 -9.54619 -9.37403 -8.65026 -8.30113 -7.90239 -6.34811 0.54954 0.75505 1.00300 1.28841 1.39494 1.51491 1.56960 2.21868 2.25239 2.65511 2.75257 3.08265 3.75886 4.05104 4.22635 4.34296 4.42973 4.44912 4.49918 4.57468 4.66144 4.72694 4.78216 4.83239 4.92365 4.93054 4.97034 5.05006 5.10167 5.21426 5.32312 5.39905 5.42345 5.67128 5.75776 5.80270 5.93808 6.03960 6.13699 6.22873 6.44144 6.57217 6.61156 6.80370 6.93481 6.96517 7.10776 8.35284 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.003179 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.400088 B = 8806.779708 C = 9055.184859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.644 5.644 3 C 0.094 3.906 4 C 0.235 3.765 5 C -0.235 4.235 6 C -0.045 4.045 7 C -0.234 4.234 8 C 0.223 3.777 9 N -0.689 5.689 10 C 0.203 3.797 11 C -0.265 4.265 12 C -0.082 4.082 13 C -0.208 4.208 14 C 0.108 3.892 15 C -0.505 4.505 16 H 0.074 0.926 17 C 0.040 3.960 18 N -0.823 5.823 19 Si 0.979 3.021 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.281 4.281 24 C -0.259 4.259 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.288 0.712 39 H 0.096 0.904 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 18.517 3.905 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.049 4.049 4 C 0.131 3.869 5 C -0.258 4.258 6 C -0.064 4.064 7 C -0.257 4.257 8 C 0.124 3.876 9 N -0.312 5.312 10 C 0.107 3.893 11 C -0.286 4.286 12 C -0.101 4.101 13 C -0.228 4.228 14 C 0.106 3.894 15 C -0.535 4.535 16 H 0.092 0.908 17 C -0.176 4.176 18 N -0.449 5.449 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.303 4.303 24 C -0.285 4.285 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.243 0.757 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.339 18.589 3.616 18.941 hybrid contribution -0.438 -1.203 0.199 1.296 sum -0.776 17.386 3.815 17.817 Atomic orbital electron populations 1.21770 0.78787 1.03256 1.01548 1.46537 1.05708 1.03118 1.80187 1.21744 0.97526 0.84160 1.01437 1.17617 0.91410 0.85562 0.92283 1.20675 0.91846 0.98792 1.14535 1.20883 1.00151 0.90856 0.94537 1.20819 0.92864 0.98792 1.13203 1.17651 0.91377 0.84929 0.93660 1.42084 1.23071 1.06880 1.59136 1.17437 0.94849 0.85718 0.91338 1.20313 1.09990 0.97583 1.00760 1.20742 0.98623 0.92453 0.98317 1.21076 1.03805 0.95566 1.02397 1.17684 0.88197 0.92848 0.90708 1.19753 1.44303 0.92480 0.96924 0.90771 1.26719 0.90977 1.05564 0.94324 1.69894 1.34950 1.35965 1.04078 0.85248 0.79402 0.75946 0.79421 1.18683 1.18950 1.18357 1.20761 1.11190 0.91413 1.06966 1.20311 0.99659 0.89934 1.18630 0.93045 0.89461 0.92203 0.92670 0.88844 0.92510 0.84325 0.84302 0.88070 0.75725 0.87614 0.86995 0.88769 0.90103 0.88566 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 10.16 127.77 1.30 2.69 16 2 N -0.64 -12.75 3.41 -747.34 -2.55 -15.30 16 3 C 0.09 1.24 9.40 127.77 1.20 2.44 16 4 C 0.23 6.15 6.55 38.20 0.25 6.40 16 5 C -0.24 -5.92 9.31 22.43 0.21 -5.71 16 6 C -0.05 -1.27 10.03 22.23 0.22 -1.05 16 7 C -0.23 -8.17 7.90 22.43 0.18 -7.99 16 8 C 0.22 7.84 5.86 38.20 0.22 8.06 16 9 N -0.69 -26.30 5.45 -180.71 -0.98 -27.29 16 10 C 0.20 9.34 5.93 38.17 0.23 9.57 16 11 C -0.26 -12.26 7.97 22.59 0.18 -12.08 16 12 C -0.08 -4.00 10.01 22.20 0.22 -3.78 16 13 C -0.21 -11.32 8.68 22.76 0.20 -11.13 16 14 C 0.11 6.06 5.53 -21.31 -0.12 5.94 16 15 C -0.51 -28.00 9.02 23.46 0.21 -27.79 16 16 H 0.07 3.98 7.92 -2.91 -0.02 3.96 16 17 C 0.04 2.04 5.06 85.25 0.43 2.47 16 18 N -0.82 -44.05 11.30 21.82 0.25 -43.80 16 19 Si 0.98 38.88 29.60 68.60 2.03 40.91 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 23 C -0.28 -14.32 9.69 22.86 0.22 -14.10 16 24 C -0.26 -7.72 9.12 22.53 0.21 -7.52 16 25 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.09 0.93 7.92 -2.39 -0.02 0.91 16 27 H 0.06 1.05 6.19 -2.39 -0.01 1.04 16 28 H 0.05 0.71 7.95 -2.39 -0.02 0.70 16 29 H 0.09 0.78 7.79 -2.39 -0.02 0.76 16 30 H 0.06 0.72 7.95 -2.39 -0.02 0.70 16 31 H 0.14 2.72 6.72 -2.92 -0.02 2.70 16 32 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.10 4.00 6.72 -2.91 -0.02 3.98 16 34 H 0.41 13.79 8.90 -92.71 -0.83 12.97 16 35 H 0.11 4.61 6.59 -2.91 -0.02 4.59 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.09 5.31 6.47 -2.91 -0.02 5.29 16 38 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.13 3.43 6.13 -2.91 -0.02 3.41 16 Total: -1.00 -63.95 329.17 4.33 -59.61 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.23 Total: 39.42 kcal Atomic # 6 Polarization: -58.92 SS G_CDS: 5.36 Total: -53.56 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -3.29 Total: -86.38 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.95 4.33 -59.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174967013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.107 kcal (2) G-P(sol) polarization free energy of solvation -63.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds