Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47012 * 269.99745 * 3 2 1 5 5 H 1.48505 * 109.46920 * 29.99484 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99495 * 3 2 1 7 7 C 1.37876 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00058 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00108 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.49797 * 59.93323 * 9 7 2 11 11 C 1.53036 * 109.49764 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53679 * 181.34809 * 11 9 7 13 13 C 1.53190 * 109.31345 * 298.63653 * 12 11 9 14 14 N 1.46921 * 108.77538 * 54.63570 * 13 12 11 15 15 C 1.34784 * 120.63285 * 126.36895 * 14 13 12 16 16 S 1.71195 * 119.99557 * 5.04787 * 15 14 13 17 17 N 1.34776 * 120.00088 * 184.77200 * 15 14 13 18 18 C 1.46500 * 119.99726 * 175.20279 * 17 15 14 19 19 C 1.54270 * 110.02810 * 272.16550 * 18 17 15 20 20 C 1.54890 * 104.19349 * 217.10555 * 19 18 17 21 21 C 1.54893 * 102.74669 * 37.94610 * 20 19 18 22 22 C 1.53874 * 110.03188 * 154.99990 * 18 17 15 23 23 C 1.46930 * 118.73906 * 306.64192 * 14 13 12 24 24 H 0.97003 * 120.00748 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.45772 * 61.33214 * 11 9 7 26 26 H 1.09000 * 109.46181 * 301.36616 * 11 9 7 27 27 H 1.08997 * 109.49718 * 178.68333 * 12 11 9 28 28 H 1.08998 * 109.49716 * 58.59012 * 12 11 9 29 29 H 1.09002 * 109.58607 * 294.84839 * 13 12 11 30 30 H 1.08999 * 109.70129 * 174.49534 * 13 12 11 31 31 H 0.97002 * 119.99845 * 355.20099 * 17 15 14 32 32 H 1.08999 * 110.01934 * 33.60224 * 18 17 15 33 33 H 1.08998 * 110.48914 * 335.78583 * 19 18 17 34 34 H 1.08996 * 110.48323 * 98.42751 * 19 18 17 35 35 H 1.08994 * 110.75847 * 279.62840 * 20 19 18 36 36 H 1.09005 * 110.91120 * 156.32935 * 20 19 18 37 37 H 1.09005 * 110.48461 * 203.37670 * 21 20 19 38 38 H 1.08996 * 110.60473 * 80.79345 * 21 20 19 39 39 H 1.08997 * 110.03327 * 238.56788 * 22 18 17 40 40 H 1.09002 * 110.02777 * 359.95194 * 22 18 17 41 41 H 1.08998 * 109.58566 * 173.14818 * 23 14 13 42 42 H 1.08998 * 109.58388 * 293.56775 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8750 -0.6789 0.8904 11 6 4.0224 -2.6365 0.0023 12 6 5.5524 -2.6376 0.0368 13 6 6.0880 -1.9361 -1.2153 14 7 5.4873 -0.5980 -1.3010 15 6 6.2639 0.4969 -1.4224 16 16 7.9575 0.3287 -1.6080 17 7 5.7066 1.7239 -1.4032 18 6 6.5583 2.9157 -1.4292 19 6 6.9563 3.3121 0.0076 20 6 6.9478 4.8608 -0.0096 21 6 5.7320 5.1859 -0.9126 22 6 5.7798 4.1071 -2.0142 23 6 4.0242 -0.4755 -1.2457 24 1 -0.4851 0.8400 -0.0004 25 1 3.6792 -3.1440 -0.8993 26 1 3.6390 -3.1568 0.8800 27 1 5.9150 -3.6652 0.0612 28 1 5.8966 -2.1087 0.9255 29 1 5.8210 -2.5138 -2.1002 30 1 7.1723 -1.8464 -1.1508 31 1 4.7417 1.8179 -1.3722 32 1 7.4505 2.7237 -2.0251 33 1 6.2265 2.9344 0.7236 34 1 7.9527 2.9387 0.2441 35 1 7.8682 5.2474 -0.4470 36 1 6.8012 5.2602 0.9941 37 1 5.8349 6.1801 -1.3475 38 1 4.8034 5.1124 -0.3467 39 1 6.2947 4.4939 -2.8936 40 1 4.7687 3.7983 -2.2796 41 1 3.7472 0.5776 -1.1989 42 1 3.5856 -0.9316 -2.1332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198535383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = 5.831981 kcal Electronic energy + Delta-G solvation = -21358.257415 eV Core-core repulsion = 18463.595970 eV Total energy + Delta-G solvation = -2894.661445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96905 -38.45998 -35.61862 -33.60564 -32.20886 -30.90479 -28.88157 -27.83203 -25.89256 -25.27584 -22.32286 -21.80427 -20.78079 -20.61088 -19.34474 -18.03148 -17.28670 -16.92459 -15.55027 -15.39330 -14.76749 -14.59819 -14.30715 -14.20473 -14.10515 -13.49714 -13.40928 -12.90829 -12.66414 -12.52208 -11.79060 -11.67525 -11.49194 -11.33519 -11.31243 -11.16599 -10.87709 -10.81561 -10.77160 -10.70969 -10.63176 -10.32202 -10.06747 -9.57394 -9.44382 -8.95721 -8.52473 -7.45095 -7.09984 -6.40733 -4.41254 1.75535 2.23752 2.76220 2.91979 2.95690 3.02621 3.51023 4.01521 4.40498 4.50356 4.76503 4.87876 5.06145 5.26245 5.27671 5.31218 5.34012 5.40844 5.46733 5.53223 5.59997 5.66491 5.75298 5.77278 5.83923 5.91719 6.00762 6.03452 6.10735 6.16584 6.20400 6.23696 6.37532 6.47660 6.57436 6.69010 6.85645 7.06728 7.18905 7.38557 7.51514 8.19770 8.66069 9.18527 10.72330 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.008402 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.704054 B = 3331.663473 C = 4968.276938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.859 3.141 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.007 3.993 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.104 3.896 14 N -0.557 5.557 15 C 0.572 3.428 16 S -0.688 6.688 17 N -0.690 5.690 18 C 0.137 3.863 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.137 4.137 23 C 0.086 3.914 24 H 0.268 0.732 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.394 0.606 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 5.970 -1.930 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.688 3.312 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.013 4.013 10 H 0.051 0.949 11 C -0.141 4.141 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.263 5.263 15 C 0.210 3.790 16 S -0.560 6.560 17 N -0.324 5.324 18 C 0.032 3.968 19 C -0.172 4.172 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.175 4.175 23 C -0.037 4.037 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.235 0.765 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.594 5.969 -2.045 12.331 hybrid contribution -1.330 1.177 0.035 1.776 sum 9.265 7.145 -2.010 11.872 Atomic orbital electron populations 1.69837 1.06001 1.27202 1.49291 1.25036 0.94721 0.98544 0.94597 0.87307 0.80963 0.85112 0.77775 1.20569 1.20851 1.18618 1.20984 0.87899 0.94910 1.51428 0.89866 1.19411 0.97048 0.92958 0.91891 0.94864 1.21479 0.92547 0.98012 1.02032 1.21997 0.97764 1.00126 0.97449 1.22237 1.01632 0.79279 0.98714 1.47702 1.07404 1.05772 1.65454 1.22212 0.94624 0.82008 0.80147 1.93018 0.92648 1.93613 1.76713 1.45576 1.10232 1.04188 1.72421 1.22164 0.94622 0.81618 0.98385 1.22764 1.03029 0.95520 0.95873 1.22464 0.98221 0.95389 0.99872 1.22382 0.98943 0.98342 0.96730 1.22505 1.00638 0.95138 0.99223 1.22988 0.76042 1.00881 1.03826 0.92172 0.92197 0.91715 0.90743 0.91789 0.90782 0.86164 0.76500 0.85924 0.91507 0.89796 0.90933 0.91248 0.91100 0.91592 0.89992 0.91508 0.92538 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.96 55.43 0.77 -24.24 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.86 19.17 23.18 -169.99 -3.94 15.22 16 4 H -0.28 -5.80 6.75 56.52 0.38 -5.41 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.66 6.53 56.52 0.37 -5.29 16 7 C -0.51 -12.97 9.15 -34.44 -0.32 -13.29 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.01 0.14 1.83 -91.88 -0.17 -0.03 16 10 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 11 C -0.10 -1.81 5.11 -26.69 -0.14 -1.95 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 13 C 0.10 1.64 6.31 -3.71 -0.02 1.62 16 14 N -0.56 -10.03 2.98 -175.06 -0.52 -10.55 16 15 C 0.57 10.54 7.71 -86.91 -0.67 9.87 16 16 S -0.69 -13.53 26.46 -107.50 -2.84 -16.38 16 17 N -0.69 -11.74 4.95 -54.43 -0.27 -12.01 16 18 C 0.14 1.96 3.05 -66.81 -0.20 1.75 16 19 C -0.13 -1.79 6.53 -25.07 -0.16 -1.95 16 20 C -0.12 -1.27 6.91 -24.74 -0.17 -1.45 16 21 C -0.13 -1.33 6.83 -25.07 -0.17 -1.50 16 22 C -0.14 -1.62 6.57 -25.61 -0.17 -1.79 16 23 C 0.09 1.68 5.09 -3.93 -0.02 1.66 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.12 1.98 5.99 -50.49 -0.30 1.68 16 31 H 0.39 6.95 4.35 -40.82 -0.18 6.77 16 32 H 0.12 1.87 6.66 -51.93 -0.35 1.52 16 33 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 41 H 0.06 1.14 1.37 -51.93 -0.07 1.07 16 42 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -28.51 323.76 -11.16 -39.67 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.76 Total: 10.80 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.47 Total: -7.39 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.02 Total: -46.81 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -3.94 Total: 15.22 kcal Atomic # 16 Polarization: -13.53 SS G_CDS: -2.84 Total: -16.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.51 -11.16 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198535383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.497 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds