Wall clock time and date at job start Tue Mar 31 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47145 * 299.99470 * 3 2 1 6 6 H 1.48500 * 109.47746 * 59.99817 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99899 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.52553 * 299.92168 * 9 7 2 11 11 C 1.53043 * 109.49485 * 179.83944 * 9 7 2 12 12 C 1.53044 * 109.53307 * 178.68870 * 11 9 7 13 13 C 1.52750 * 109.38423 * 61.23985 * 12 11 9 14 14 N 1.46930 * 109.01203 * 305.58452 * 13 12 11 15 15 C 1.34770 * 120.63307 * 233.58701 * 14 13 12 16 16 S 1.71202 * 119.99967 * 4.93471 * 15 14 13 17 17 N 1.34776 * 120.00033 * 184.93574 * 15 14 13 18 18 C 1.46496 * 120.00049 * 175.01417 * 17 15 14 19 19 C 1.54261 * 110.03485 * 272.91062 * 18 17 15 20 20 C 1.54967 * 104.16268 * 217.13567 * 19 18 17 21 21 C 1.54894 * 102.77656 * 37.88459 * 20 19 18 22 22 C 1.53876 * 110.03260 * 155.68938 * 18 17 15 23 23 C 1.46924 * 118.73164 * 53.31136 * 14 13 12 24 24 H 0.97005 * 120.00497 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.45909 * 298.70356 * 11 9 7 26 26 H 1.09000 * 109.46118 * 58.68249 * 11 9 7 27 27 H 1.09003 * 109.49046 * 181.31699 * 12 11 9 28 28 H 1.08999 * 109.49399 * 301.37769 * 12 11 9 29 29 H 1.09000 * 109.51024 * 185.70191 * 13 12 11 30 30 H 1.08998 * 109.43237 * 65.42657 * 13 12 11 31 31 H 0.97002 * 119.99741 * 355.01999 * 17 15 14 32 32 H 1.09003 * 110.01490 * 34.30194 * 18 17 15 33 33 H 1.09002 * 110.48696 * 335.78068 * 19 18 17 34 34 H 1.09003 * 110.48789 * 98.43068 * 19 18 17 35 35 H 1.08999 * 110.72393 * 279.57612 * 20 19 18 36 36 H 1.09004 * 110.92804 * 156.29453 * 20 19 18 37 37 H 1.08992 * 110.48985 * 203.40541 * 21 20 19 38 38 H 1.09006 * 110.48288 * 80.76206 * 21 20 19 39 39 H 1.08998 * 110.03713 * 238.57076 * 22 18 17 40 40 H 1.09001 * 110.03190 * 0.02562 * 22 18 17 41 41 H 1.08999 * 109.58831 * 66.43777 * 23 14 13 42 42 H 1.09005 * 109.58083 * 186.85710 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6255 -2.5579 0.8923 11 6 2.2451 -3.6628 -0.0019 12 6 1.4811 -4.9885 0.0322 13 6 0.6019 -5.0993 -1.2120 14 7 -0.2565 -3.9100 -1.2989 15 6 -1.5931 -4.0350 -1.4169 16 16 -2.3181 -5.5840 -1.3398 17 7 -2.3592 -2.9406 -1.5956 18 6 -3.7976 -3.0841 -1.8329 19 6 -4.0684 -3.2727 -3.3399 20 6 -5.3835 -2.4919 -3.5895 21 6 -5.2240 -1.2514 -2.6758 22 6 -4.5323 -1.7997 -1.4106 23 6 0.3697 -2.5818 -1.2486 24 1 -0.4851 0.8400 -0.0004 25 1 2.8537 -3.6177 -0.9051 26 1 2.8896 -3.5926 0.8743 27 1 2.1900 -5.8163 0.0532 28 1 0.8538 -5.0240 0.9229 29 1 -0.0181 -5.9930 -1.1412 30 1 1.2337 -5.1596 -2.0982 31 1 -1.9580 -2.0579 -1.5671 32 1 -4.1847 -3.9365 -1.2745 33 1 -3.2555 -2.8488 -3.9295 34 1 -4.2006 -4.3290 -3.5745 35 1 -6.2471 -3.0848 -3.2884 36 1 -5.4669 -2.1938 -4.6346 37 1 -6.1992 -0.8332 -2.4266 38 1 -4.5978 -0.5006 -3.1579 39 1 -5.2765 -2.0288 -0.6479 40 1 -3.8185 -1.0694 -1.0294 41 1 0.9820 -2.4325 -2.1379 42 1 -0.4035 -1.8149 -1.2019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198535385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:51 Heat of formation + Delta-G solvation = -18.353952 kcal Electronic energy + Delta-G solvation = -21043.047654 eV Core-core repulsion = 18147.337428 eV Total energy + Delta-G solvation = -2895.710226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.04802 -39.46413 -36.77579 -35.22632 -33.49923 -31.78676 -29.70833 -28.79509 -27.49712 -26.45332 -23.71071 -23.14551 -21.66276 -21.57083 -20.66095 -19.01556 -18.59361 -18.03881 -16.64186 -16.47274 -16.23779 -15.94355 -15.56878 -15.32679 -14.94219 -14.61550 -14.49819 -14.29941 -13.88582 -13.51369 -12.96254 -12.90098 -12.72967 -12.44567 -12.36858 -12.22720 -12.14853 -12.05078 -11.97855 -11.91870 -11.79166 -11.53357 -11.45754 -11.11404 -10.98488 -10.59599 -9.66911 -8.85504 -8.53650 -8.22897 -6.33551 0.51352 0.95660 1.38922 1.44582 1.53064 1.75373 2.34154 2.43267 3.10115 3.56552 3.68198 3.97418 3.99717 4.07699 4.17111 4.42361 4.44851 4.49304 4.51493 4.52404 4.57601 4.65311 4.77539 4.80914 4.86530 4.94151 4.99371 5.03762 5.05702 5.18281 5.19763 5.22431 5.27008 5.43272 5.46806 5.48286 5.60264 5.70629 5.82445 5.99710 6.24466 6.40131 6.75724 7.36074 8.83630 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.006637 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.733925 B = 4217.485538 C = 5954.356192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.286 1.286 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.040 3.960 10 H -0.006 1.006 11 C -0.107 4.107 12 C -0.121 4.121 13 C 0.100 3.900 14 N -0.557 5.557 15 C 0.578 3.422 16 S -0.746 6.746 17 N -0.673 5.673 18 C 0.135 3.865 19 C -0.124 4.124 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.131 4.131 23 C 0.108 3.892 24 H 0.265 0.735 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.406 0.594 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -1.368 -6.037 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.021 3.979 10 H 0.012 0.988 11 C -0.145 4.145 12 C -0.160 4.160 13 C -0.022 4.022 14 N -0.262 5.262 15 C 0.213 3.787 16 S -0.620 6.620 17 N -0.304 5.304 18 C 0.031 3.969 19 C -0.163 4.163 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.016 4.016 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.070 -2.178 -6.004 8.811 hybrid contribution 1.103 2.181 0.367 2.472 sum -4.967 0.003 -5.637 7.513 Atomic orbital electron populations 1.69860 1.06870 1.27623 1.50949 1.25643 0.95726 1.02100 0.94221 0.85563 0.79170 0.79795 0.77481 1.19375 1.20462 1.21199 1.21452 0.93403 0.90978 1.50950 0.92145 1.18896 0.93156 0.93951 0.91943 0.98831 1.21572 0.97820 0.93630 1.01483 1.21791 0.98539 0.98952 0.96679 1.22207 0.92793 0.87769 0.99467 1.47784 1.02796 1.10636 1.65020 1.21933 0.84449 0.92145 0.80163 1.92964 1.76150 1.11886 1.80968 1.45612 1.09891 1.06671 1.68259 1.22229 0.76343 1.00339 0.98005 1.22666 0.98779 1.01182 0.93715 1.22466 0.96272 0.95916 1.00458 1.22343 1.01125 0.97620 0.94356 1.22464 0.99647 0.95031 0.99772 1.22362 0.98437 0.80592 1.00231 0.92520 0.91901 0.92566 0.87873 0.93580 0.87063 0.89424 0.75289 0.88516 0.92444 0.91459 0.90156 0.89927 0.89370 0.91637 0.89543 0.92006 0.91995 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.52 11.39 21.45 0.24 -45.27 16 2 C 0.02 1.12 5.30 84.65 0.45 1.57 16 3 Si 0.95 39.39 29.54 68.60 2.03 41.42 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.53 -25.81 8.56 25.60 0.22 -25.59 16 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.04 1.79 2.25 -11.46 -0.03 1.77 16 10 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 11 C -0.11 -3.92 5.11 30.62 0.16 -3.76 16 12 C -0.12 -3.87 6.06 30.53 0.19 -3.69 16 13 C 0.10 3.34 6.31 86.21 0.54 3.88 16 14 N -0.56 -21.18 2.98 -707.76 -2.11 -23.29 16 15 C 0.58 22.60 7.70 179.06 1.38 23.98 16 16 S -0.75 -31.72 26.46 -56.49 -1.49 -33.22 16 17 N -0.67 -23.48 4.95 -326.14 -1.61 -25.10 16 18 C 0.14 4.00 3.03 45.72 0.14 4.14 16 19 C -0.12 -3.23 6.54 31.69 0.21 -3.02 16 20 C -0.11 -2.15 6.91 31.91 0.22 -1.93 16 21 C -0.12 -2.24 6.83 31.67 0.22 -2.02 16 22 C -0.13 -3.19 6.57 31.32 0.21 -2.99 16 23 C 0.11 4.44 5.36 86.36 0.46 4.90 16 24 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 3.94 5.93 -3.87 -0.02 3.92 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.41 14.63 5.80 -92.71 -0.54 14.10 16 32 H 0.10 3.27 6.70 -2.39 -0.02 3.26 16 33 H 0.06 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 1.69 7.61 -2.39 -0.02 1.68 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.10 4.21 3.76 -2.38 -0.01 4.20 16 Total: -1.00 -56.52 332.91 1.86 -54.66 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.45 Total: 33.57 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.36 Total: -2.77 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -3.48 Total: -93.66 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: -31.72 SS G_CDS: -1.49 Total: -33.22 kcal Total: -56.52 1.86 -54.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198535385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.304 kcal (2) G-P(sol) polarization free energy of solvation -56.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds