Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47203 * 274.99516 * 3 2 1 5 5 H 1.48493 * 109.46960 * 34.99657 * 3 2 1 6 6 H 1.48500 * 109.46797 * 154.99315 * 3 2 1 7 7 C 1.37877 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00158 * 189.46450 * 7 2 1 9 9 C 1.50701 * 119.99826 * 9.47458 * 7 2 1 10 10 C 1.53043 * 109.45971 * 185.43439 * 9 7 2 11 11 C 1.53193 * 109.31187 * 178.62672 * 10 9 7 12 12 N 1.46920 * 108.89528 * 54.56027 * 11 10 9 13 13 C 1.34774 * 120.63155 * 126.45963 * 12 11 10 14 14 S 1.71203 * 119.99775 * 355.05182 * 13 12 11 15 15 N 1.34776 * 120.00378 * 175.04848 * 13 12 11 16 16 C 1.46501 * 120.00464 * 185.00974 * 15 13 12 17 17 C 1.54262 * 110.03221 * 272.16799 * 16 15 13 18 18 C 1.54886 * 104.19692 * 217.10364 * 17 16 15 19 19 C 1.54891 * 102.74864 * 37.93927 * 18 17 16 20 20 C 1.53869 * 110.03405 * 154.99819 * 16 15 13 21 21 C 1.46961 * 118.71604 * 306.64152 * 12 11 10 22 22 C 1.53037 * 109.45284 * 65.37123 * 9 7 2 23 23 H 0.97000 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.45573 * 305.40081 * 9 7 2 25 25 H 1.08992 * 109.49680 * 58.67342 * 10 9 7 26 26 H 1.09002 * 109.52291 * 298.58994 * 10 9 7 27 27 H 1.09003 * 109.58618 * 174.42528 * 11 10 9 28 28 H 1.09006 * 109.58460 * 294.70427 * 11 10 9 29 29 H 0.97000 * 119.99745 * 5.00324 * 15 13 12 30 30 H 1.09006 * 110.01583 * 33.60255 * 16 15 13 31 31 H 1.09001 * 110.48524 * 335.77907 * 17 16 15 32 32 H 1.08994 * 110.49189 * 98.42046 * 17 16 15 33 33 H 1.08994 * 110.75662 * 279.62500 * 18 17 16 34 34 H 1.09000 * 110.91699 * 156.32578 * 18 17 16 35 35 H 1.08998 * 110.48749 * 203.38152 * 19 18 17 36 36 H 1.08998 * 110.48395 * 80.73666 * 19 18 17 37 37 H 1.09001 * 110.03220 * 238.56917 * 20 16 15 38 38 H 1.08994 * 110.03472 * 359.95018 * 20 16 15 39 39 H 1.09002 * 109.46848 * 293.57357 * 21 12 11 40 40 H 1.09001 * 109.71083 * 173.28615 * 21 12 11 41 41 H 1.09004 * 109.49546 * 301.32766 * 22 9 7 42 42 H 1.08995 * 109.49646 * 61.39507 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5033 2.6198 0.8030 6 1 3.5954 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1533 9 6 1.2665 -2.4901 -0.2160 10 6 2.2329 -3.6631 -0.0361 11 6 1.4719 -4.9796 -0.2220 12 7 0.7886 -4.9547 -1.5224 13 6 0.9690 -5.9509 -2.4121 14 16 2.0979 -7.1960 -2.0857 15 7 0.2607 -5.9670 -3.5586 16 6 0.3751 -7.1047 -4.4744 17 6 1.5445 -6.8784 -5.4548 18 6 1.0367 -7.4676 -6.7942 19 6 -0.4590 -7.0649 -6.7996 20 6 -0.8987 -7.2234 -5.3294 21 6 -0.0920 -3.8207 -1.8358 22 6 0.6866 -2.5172 -1.6320 23 1 -0.4850 0.8400 0.0004 24 1 0.4571 -2.5720 0.5096 25 1 2.6632 -3.6298 0.9647 26 1 3.0295 -3.5957 -0.7771 27 1 2.1727 -5.8140 -0.1932 28 1 0.7367 -5.0923 0.5749 29 1 -0.3249 -5.2254 -3.7773 30 1 0.5329 -8.0238 -3.9099 31 1 1.7526 -5.8137 -5.5610 32 1 2.4340 -7.4100 -5.1170 33 1 1.1448 -8.5521 -6.8048 34 1 1.5601 -7.0204 -7.6393 35 1 -1.0316 -7.7328 -7.4431 36 1 -0.5744 -6.0304 -7.1229 37 1 -1.3587 -8.2003 -5.1805 38 1 -1.6024 -6.4350 -5.0624 39 1 -0.9563 -3.8376 -1.1719 40 1 -0.4251 -3.8891 -2.8714 41 1 0.0164 -1.6682 -1.7669 42 1 1.4974 -2.4597 -2.3582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198536949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -2.612325 kcal Electronic energy + Delta-G solvation = -20579.664149 eV Core-core repulsion = 17684.636532 eV Total energy + Delta-G solvation = -2895.027618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87006 -38.39357 -35.59753 -33.49662 -31.38778 -30.67445 -28.94342 -27.96488 -26.25773 -24.00209 -22.82826 -21.50041 -20.83222 -20.73222 -19.16215 -17.86551 -17.14137 -16.38792 -15.57525 -15.48169 -14.72911 -14.49710 -14.34006 -14.06435 -13.55558 -13.28720 -13.02861 -12.81411 -12.67779 -11.93441 -11.81032 -11.55980 -11.39632 -11.27524 -11.21394 -11.00905 -10.87586 -10.83098 -10.76468 -10.63273 -10.56507 -10.29500 -9.77472 -9.23408 -9.18065 -8.50667 -8.46595 -7.40472 -7.03313 -6.17016 -4.18723 1.76184 2.26937 2.92578 3.22002 3.30285 3.34000 3.48119 4.33465 4.34176 4.43523 4.67536 5.03126 5.17604 5.20694 5.25770 5.34752 5.37988 5.45863 5.53132 5.59438 5.61249 5.69388 5.79402 5.85037 5.88892 5.94592 6.07043 6.16543 6.20189 6.32053 6.39373 6.57339 6.63091 6.82980 6.87783 7.01923 7.16711 7.48371 7.55256 7.72610 7.83366 8.26975 8.85135 9.46096 10.91652 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.004166 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.048475 B = 6719.298959 C = 7274.606200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.045 3.955 10 C -0.121 4.121 11 C 0.099 3.901 12 N -0.548 5.548 13 C 0.571 3.429 14 S -0.685 6.685 15 N -0.690 5.690 16 C 0.145 3.855 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.092 3.908 22 C -0.116 4.116 23 H 0.261 0.739 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.395 0.605 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -10.930 -11.146 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.159 4.159 11 C -0.023 4.023 12 N -0.254 5.254 13 C 0.209 3.791 14 S -0.557 6.557 15 N -0.323 5.323 16 C 0.040 3.960 17 C -0.169 4.169 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.171 4.171 21 C -0.032 4.032 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.234 0.766 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.806 -11.579 -10.894 16.348 hybrid contribution -0.554 2.194 -0.350 2.290 sum -4.360 -9.385 -11.244 15.281 Atomic orbital electron populations 1.69937 1.05940 1.26709 1.50263 1.24957 0.94795 0.99151 0.94824 0.86637 0.80190 0.83580 0.78024 1.20727 1.21247 1.19764 1.21152 0.94243 0.90713 1.49204 0.92456 1.18687 0.94351 0.92283 0.91995 1.22002 0.98988 0.93401 1.01537 1.22432 0.97477 1.02251 0.80187 1.47537 1.43359 1.18500 1.16045 1.22158 0.86379 0.88740 0.81801 1.93131 1.39570 1.34793 1.88192 1.45354 1.44532 1.23362 1.19081 1.22016 0.94820 0.89554 0.89616 1.22740 0.98708 1.01649 0.93767 1.22487 0.95298 1.00971 0.97465 1.22360 0.96579 1.01565 0.95669 1.22472 0.96728 1.02769 0.95168 1.22289 0.93854 0.87669 0.99409 1.21985 0.99148 0.93268 1.01059 0.92936 0.94561 0.91238 0.92615 0.86548 0.91187 0.76561 0.86843 0.91521 0.89722 0.91152 0.91398 0.91406 0.91575 0.90383 0.91371 0.90366 0.92147 0.89096 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 12.15 55.43 0.67 -23.14 16 2 C 0.06 1.68 5.19 -17.82 -0.09 1.59 16 3 Si 0.89 20.40 29.55 -169.99 -5.02 15.37 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.29 8.48 -34.44 -0.29 -13.58 16 8 H 0.06 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.05 1.02 1.93 -91.73 -0.18 0.85 16 10 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 11 C 0.10 1.73 6.34 -3.71 -0.02 1.71 16 12 N -0.55 -9.13 2.98 -174.76 -0.52 -9.65 16 13 C 0.57 9.33 7.71 -86.92 -0.67 8.66 16 14 S -0.68 -13.20 26.46 -107.50 -2.84 -16.04 16 15 N -0.69 -8.83 4.94 -54.44 -0.27 -9.10 16 16 C 0.14 1.63 2.93 -66.82 -0.20 1.44 16 17 C -0.13 -1.44 6.42 -25.08 -0.16 -1.60 16 18 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 19 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 20 C -0.13 -1.11 6.57 -25.62 -0.17 -1.28 16 21 C 0.09 1.47 6.38 -3.69 -0.02 1.45 16 22 C -0.12 -2.34 5.21 -26.61 -0.14 -2.48 16 23 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.12 2.13 5.93 -49.60 -0.29 1.83 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.39 4.39 5.81 -40.82 -0.24 4.15 16 30 H 0.11 1.51 6.93 -51.93 -0.36 1.15 16 31 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.54 7.62 -51.93 -0.40 0.14 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.79 5.66 -51.93 -0.29 0.50 16 41 H 0.09 2.04 6.87 -51.93 -0.36 1.69 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -28.68 334.18 -12.34 -41.02 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.97 Total: 4.59 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.43 Total: -8.09 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.12 Total: -41.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -13.20 SS G_CDS: -2.84 Total: -16.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.68 -12.34 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198536949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.412 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds